HEADER OXIDOREDUCTASE 24-OCT-19 6T8M TITLE PROLYL HYDROXYLASE (PHD) INVOLVED IN HYPOXIA SENSING BY DICTYOSTELIUM TITLE 2 DISCOIDEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE SUBUNIT ALPHA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PROLYL 4-HYDROLASE; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 GENE: PHYA, P4H1, DDB_G0277759; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-ZB KEYWDS PROLYL HYDROXYLASE, OXYGEN SENSING, 2-OXOGLUTARATE AND IRON DEPENDENT KEYWDS 2 OXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,M.A.MCDONOUGH,T.LIU,I.J.CLIFTON,C.J.SCHOFIELD REVDAT 4 24-JAN-24 6T8M 1 REMARK REVDAT 3 16-DEC-20 6T8M 1 JRNL REVDAT 2 30-SEP-20 6T8M 1 JRNL REVDAT 1 23-SEP-20 6T8M 0 JRNL AUTH T.LIU,M.I.ABBOUD,R.CHOWDHURY,A.TUMBER,A.P.HARDY,K.LIPPL, JRNL AUTH 2 C.T.LOHANS,E.PIRES,J.WICKENS,M.A.MCDONOUGH,C.M.WEST, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL BIOCHEMICAL AND BIOPHYSICAL ANALYSES OF HYPOXIA SENSING JRNL TITL 2 PROLYL HYDROXYLASES FROM DICTYOSTELIUM DISCOIDEUM AND JRNL TITL 3 TOXOPLASMA GONDII . JRNL REF J.BIOL.CHEM. V. 295 16545 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32934009 JRNL DOI 10.1074/JBC.RA120.013998 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9200 - 5.1900 1.00 2799 160 0.2044 0.2580 REMARK 3 2 5.1900 - 4.1200 1.00 2735 117 0.1549 0.1670 REMARK 3 3 4.1200 - 3.6000 1.00 2657 124 0.1850 0.2295 REMARK 3 4 3.6000 - 3.2700 1.00 2622 166 0.2092 0.2387 REMARK 3 5 3.2700 - 3.0400 1.00 2650 125 0.2304 0.2636 REMARK 3 6 3.0400 - 2.8600 1.00 2636 147 0.2443 0.2713 REMARK 3 7 2.8600 - 2.7200 1.00 2595 148 0.2682 0.2786 REMARK 3 8 2.7200 - 2.6000 1.00 2576 139 0.2644 0.2686 REMARK 3 9 2.6000 - 2.5000 1.00 2621 143 0.2713 0.2898 REMARK 3 10 2.5000 - 2.4100 1.00 2623 130 0.2789 0.3302 REMARK 3 11 2.4100 - 2.3400 1.00 2570 104 0.2998 0.2783 REMARK 3 12 2.3400 - 2.2700 1.00 2619 128 0.3131 0.3328 REMARK 3 13 2.2700 - 2.2100 1.00 2612 138 0.3244 0.3199 REMARK 3 14 2.2100 - 2.1600 1.00 2573 142 0.3507 0.2997 REMARK 3 15 2.1600 - 2.1100 1.00 2592 148 0.3603 0.3434 REMARK 3 16 2.1100 - 2.0600 1.00 2553 144 0.3977 0.3874 REMARK 3 17 2.0600 - 2.0200 1.00 2602 124 0.4084 0.4054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.318 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.997 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5200 REMARK 3 ANGLE : 0.455 7003 REMARK 3 CHIRALITY : 0.043 758 REMARK 3 PLANARITY : 0.002 888 REMARK 3 DIHEDRAL : 11.389 3107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 101 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1448 -18.5562 29.9925 REMARK 3 T TENSOR REMARK 3 T11: 1.0165 T22: 0.6292 REMARK 3 T33: 0.8790 T12: 0.2989 REMARK 3 T13: 0.1089 T23: 0.2351 REMARK 3 L TENSOR REMARK 3 L11: 0.4949 L22: 0.2339 REMARK 3 L33: 0.9924 L12: 0.2386 REMARK 3 L13: 0.4753 L23: -0.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.3175 S12: -0.3674 S13: -1.0612 REMARK 3 S21: -0.2234 S22: -0.1830 S23: 0.2599 REMARK 3 S31: 0.7285 S32: 1.0663 S33: 0.5279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1100 -10.4784 20.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.9816 T22: 0.2776 REMARK 3 T33: 0.5802 T12: 0.2765 REMARK 3 T13: 0.1317 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 6.1507 L22: 5.6825 REMARK 3 L33: 5.8972 L12: -0.4596 REMARK 3 L13: 2.8846 L23: -1.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: 0.4856 S13: -0.0693 REMARK 3 S21: 0.0669 S22: 0.0138 S23: -0.0503 REMARK 3 S31: 0.1288 S32: 0.7207 S33: -0.0304 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 147 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1579 -2.1405 16.1411 REMARK 3 T TENSOR REMARK 3 T11: 1.0430 T22: 0.3348 REMARK 3 T33: 0.3981 T12: 0.0394 REMARK 3 T13: 0.0607 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.0337 L22: 0.2729 REMARK 3 L33: 3.5834 L12: 0.1961 REMARK 3 L13: 0.5921 L23: 0.9989 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: 0.0564 S13: 0.1960 REMARK 3 S21: -0.1339 S22: 0.0905 S23: 0.0152 REMARK 3 S31: -0.0107 S32: -0.0612 S33: 0.1355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 193 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8455 -8.5924 17.8985 REMARK 3 T TENSOR REMARK 3 T11: 0.9065 T22: 0.3242 REMARK 3 T33: 0.3991 T12: -0.0413 REMARK 3 T13: -0.0065 T23: 0.1031 REMARK 3 L TENSOR REMARK 3 L11: 3.0588 L22: 0.9873 REMARK 3 L33: 5.3018 L12: 0.4296 REMARK 3 L13: 0.8627 L23: 0.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.1329 S12: 0.0739 S13: -0.1409 REMARK 3 S21: -0.7164 S22: 0.0890 S23: 0.0704 REMARK 3 S31: 0.2674 S32: -0.8271 S33: 0.0177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 261 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0482 -11.0769 19.6020 REMARK 3 T TENSOR REMARK 3 T11: 1.3957 T22: 0.1819 REMARK 3 T33: 0.4253 T12: -0.0122 REMARK 3 T13: 0.0008 T23: 0.1972 REMARK 3 L TENSOR REMARK 3 L11: 1.3904 L22: 1.0446 REMARK 3 L33: 1.1948 L12: -0.5928 REMARK 3 L13: -0.2641 L23: -0.3835 REMARK 3 S TENSOR REMARK 3 S11: -0.1925 S12: -0.0975 S13: -0.2106 REMARK 3 S21: -0.4888 S22: 0.0299 S23: -0.1851 REMARK 3 S31: 0.7099 S32: -0.3265 S33: -0.4973 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5350 -13.6903 73.3207 REMARK 3 T TENSOR REMARK 3 T11: 0.5460 T22: 0.7607 REMARK 3 T33: 0.4503 T12: -0.0359 REMARK 3 T13: -0.0533 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 3.2707 L22: 6.8961 REMARK 3 L33: 2.4613 L12: -1.0789 REMARK 3 L13: 1.5982 L23: -3.3040 REMARK 3 S TENSOR REMARK 3 S11: 0.2195 S12: 0.4897 S13: -0.2109 REMARK 3 S21: -0.6316 S22: -0.1026 S23: 0.4273 REMARK 3 S31: 1.0028 S32: -1.0807 S33: -0.2234 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0192 -4.5547 70.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.8192 REMARK 3 T33: 0.4546 T12: 0.0815 REMARK 3 T13: 0.0828 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 2.7792 L22: 1.8440 REMARK 3 L33: 1.7531 L12: -0.1571 REMARK 3 L13: 1.7922 L23: 0.3150 REMARK 3 S TENSOR REMARK 3 S11: 0.2114 S12: 0.6586 S13: 0.3670 REMARK 3 S21: -0.2025 S22: -0.1238 S23: -0.1699 REMARK 3 S31: 0.3849 S32: 1.3651 S33: -0.1922 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5576 -2.4241 92.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 1.1298 REMARK 3 T33: 0.7582 T12: -0.1018 REMARK 3 T13: -0.0335 T23: 0.1287 REMARK 3 L TENSOR REMARK 3 L11: 0.3774 L22: 0.1924 REMARK 3 L33: 1.9429 L12: 0.0758 REMARK 3 L13: 0.8206 L23: 0.3322 REMARK 3 S TENSOR REMARK 3 S11: 0.3418 S12: -0.0362 S13: 0.0606 REMARK 3 S21: 0.0289 S22: -0.8575 S23: -0.4639 REMARK 3 S31: -0.5813 S32: 2.2820 S33: 0.5377 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3061 5.4178 79.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.7497 REMARK 3 T33: 0.7907 T12: 0.0227 REMARK 3 T13: 0.0889 T23: 0.1341 REMARK 3 L TENSOR REMARK 3 L11: 6.8139 L22: 3.9910 REMARK 3 L33: 6.5180 L12: 0.1903 REMARK 3 L13: 1.1765 L23: 0.7158 REMARK 3 S TENSOR REMARK 3 S11: -0.4574 S12: 0.3045 S13: 0.8871 REMARK 3 S21: -0.2469 S22: -0.1497 S23: -0.5246 REMARK 3 S31: -0.5180 S32: 0.2697 S33: 0.2174 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4159 -2.5137 79.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.4935 REMARK 3 T33: 0.4025 T12: 0.0686 REMARK 3 T13: 0.0227 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 2.3062 L22: 1.9238 REMARK 3 L33: 3.4993 L12: 0.3551 REMARK 3 L13: -0.0287 L23: 0.2228 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: 0.1102 S13: 0.2117 REMARK 3 S21: -0.1601 S22: -0.1885 S23: 0.1409 REMARK 3 S31: 0.0124 S32: 0.1396 S33: 0.0368 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3088 -0.8570 93.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.5915 REMARK 3 T33: 0.4999 T12: 0.1012 REMARK 3 T13: 0.0223 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.7285 L22: 2.3085 REMARK 3 L33: 7.1780 L12: 1.7759 REMARK 3 L13: 3.8291 L23: 1.0520 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: -0.0450 S13: 0.1315 REMARK 3 S21: -0.0376 S22: -0.5369 S23: 0.3733 REMARK 3 S31: -0.4358 S32: -0.7123 S33: 0.3039 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2743 -12.4624 75.0768 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.7061 REMARK 3 T33: 0.5816 T12: 0.2623 REMARK 3 T13: 0.0766 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 4.3129 L22: 3.3441 REMARK 3 L33: 2.4494 L12: -0.8403 REMARK 3 L13: -0.2788 L23: 0.9177 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.4941 S13: -0.2040 REMARK 3 S21: -0.3517 S22: -0.2204 S23: -0.6055 REMARK 3 S31: 0.6943 S32: 0.6923 S33: 0.0931 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1934 -20.4383 84.8627 REMARK 3 T TENSOR REMARK 3 T11: 0.7165 T22: 0.5089 REMARK 3 T33: 0.5234 T12: 0.1109 REMARK 3 T13: -0.0252 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 6.9077 L22: 8.3602 REMARK 3 L33: 3.6940 L12: -2.3140 REMARK 3 L13: -0.9041 L23: 1.6774 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: 0.0442 S13: -1.1260 REMARK 3 S21: 0.6142 S22: -0.5679 S23: -0.1032 REMARK 3 S31: 1.7382 S32: -0.2376 S33: 0.3921 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7143 -10.4539 80.8538 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.5309 REMARK 3 T33: 0.4010 T12: 0.1913 REMARK 3 T13: 0.0165 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.7960 L22: 1.2393 REMARK 3 L33: 1.5522 L12: 0.9596 REMARK 3 L13: 0.0305 L23: 0.3560 REMARK 3 S TENSOR REMARK 3 S11: 0.2339 S12: 0.0537 S13: 0.0082 REMARK 3 S21: -0.1353 S22: -0.2724 S23: -0.5485 REMARK 3 S31: 0.6271 S32: 0.5491 S33: -0.0549 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5274 2.2757 47.9825 REMARK 3 T TENSOR REMARK 3 T11: 0.4917 T22: 0.4463 REMARK 3 T33: 0.4269 T12: 0.2477 REMARK 3 T13: 0.0287 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 2.1090 L22: 2.5479 REMARK 3 L33: 5.3166 L12: 0.5358 REMARK 3 L13: 0.5954 L23: -0.3446 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0183 S13: 0.2637 REMARK 3 S21: -0.3494 S22: -0.0477 S23: 0.1331 REMARK 3 S31: -0.5600 S32: -0.5073 S33: 0.0015 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7458 -3.9356 45.9289 REMARK 3 T TENSOR REMARK 3 T11: 0.3658 T22: 0.3707 REMARK 3 T33: 0.3626 T12: 0.1721 REMARK 3 T13: -0.0185 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 1.8761 L22: 2.4654 REMARK 3 L33: 5.5048 L12: 0.1497 REMARK 3 L13: 0.2933 L23: -0.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: -0.1689 S13: -0.0063 REMARK 3 S21: -0.2448 S22: 0.0676 S23: 0.0185 REMARK 3 S31: -0.0143 S32: -0.4214 S33: -0.0230 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1166 3.3359 8.9155 REMARK 3 T TENSOR REMARK 3 T11: 0.9677 T22: 0.9127 REMARK 3 T33: 0.6547 T12: 0.1708 REMARK 3 T13: -0.0937 T23: 0.1301 REMARK 3 L TENSOR REMARK 3 L11: 2.7441 L22: 7.0102 REMARK 3 L33: 2.1749 L12: 1.5672 REMARK 3 L13: 1.7774 L23: -1.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.3169 S12: 0.9991 S13: 0.6637 REMARK 3 S21: -0.9578 S22: 0.0631 S23: 0.2635 REMARK 3 S31: -1.1494 S32: -1.7237 S33: 0.2207 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2699 -11.3599 6.7056 REMARK 3 T TENSOR REMARK 3 T11: 1.1379 T22: 0.4989 REMARK 3 T33: 0.4046 T12: 0.1077 REMARK 3 T13: 0.1173 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.1348 L22: 1.7425 REMARK 3 L33: 3.8104 L12: 0.9562 REMARK 3 L13: -0.0789 L23: -1.1518 REMARK 3 S TENSOR REMARK 3 S11: -0.2214 S12: 0.3892 S13: -0.2240 REMARK 3 S21: -0.9904 S22: -0.0350 S23: -0.5194 REMARK 3 S31: 1.5667 S32: 0.1185 S33: 0.1426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292105059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976230 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 189.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 1.42600 REMARK 200 R SYM FOR SHELL (I) : 1.42600 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4J25, 5L9R REMARK 200 REMARK 200 REMARK: RHOMBOHEDRON REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 17.5-23% PEG 6000, REMARK 280 0.2M NACL, 2MM NICL2, 0-6% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 189.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 189.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.60800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.89050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.60800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.89050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 189.60500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.60800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.89050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 189.60500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.60800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.89050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI C 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 110 REMARK 465 LYS A 111 REMARK 465 GLY A 112 REMARK 465 SER A 133 REMARK 465 ASN A 134 REMARK 465 SER A 135 REMARK 465 ARG A 136 REMARK 465 ILE A 137 REMARK 465 GLN A 138 REMARK 465 ASP A 139 REMARK 465 LYS A 140 REMARK 465 ASP A 141 REMARK 465 LEU A 142 REMARK 465 ASN A 233 REMARK 465 ASN A 234 REMARK 465 THR A 235 REMARK 465 ASN A 236 REMARK 465 GLN A 237 REMARK 465 LYS A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 LYS A 241 REMARK 465 GLN A 242 REMARK 465 THR A 243 REMARK 465 GLU A 244 REMARK 465 ASN B 134 REMARK 465 SER B 135 REMARK 465 ARG B 136 REMARK 465 ILE B 137 REMARK 465 GLN B 138 REMARK 465 ASP B 139 REMARK 465 LYS B 140 REMARK 465 ASP B 141 REMARK 465 LEU B 142 REMARK 465 PRO B 232 REMARK 465 ASN B 233 REMARK 465 ASN B 234 REMARK 465 THR B 235 REMARK 465 ASN B 236 REMARK 465 GLN B 237 REMARK 465 LYS B 238 REMARK 465 GLU B 239 REMARK 465 LEU B 240 REMARK 465 LYS B 241 REMARK 465 GLN B 242 REMARK 465 THR B 243 REMARK 465 GLU B 244 REMARK 465 LYS C 111 REMARK 465 GLY C 112 REMARK 465 THR C 113 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 ASN C 134 REMARK 465 SER C 135 REMARK 465 ARG C 136 REMARK 465 ILE C 137 REMARK 465 GLN C 138 REMARK 465 ASP C 139 REMARK 465 LYS C 140 REMARK 465 ASP C 141 REMARK 465 LEU C 142 REMARK 465 PRO C 232 REMARK 465 ASN C 233 REMARK 465 ASN C 234 REMARK 465 THR C 235 REMARK 465 ASN C 236 REMARK 465 GLN C 237 REMARK 465 LYS C 238 REMARK 465 GLU C 239 REMARK 465 LEU C 240 REMARK 465 LYS C 241 REMARK 465 GLN C 242 REMARK 465 THR C 243 REMARK 465 GLU C 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 130 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 110 CG OD1 ND2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 ASN B 230 CG OD1 ND2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 470 LYS C 119 CG CD CE NZ REMARK 470 ARG C 147 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 230 CG OD1 ND2 REMARK 470 GLU C 245 CG CD OE1 OE2 REMARK 470 GLU C 274 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 OGA C 303 O HOH C 401 1.98 REMARK 500 OE1 GLN B 69 O HOH B 401 2.08 REMARK 500 O4 OGA A 503 O HOH A 601 2.13 REMARK 500 OD1 ASN B 165 O HOH B 402 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 628 O HOH A 628 3455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 -60.47 -91.11 REMARK 500 TRP A 116 15.46 54.49 REMARK 500 ARG A 205 78.42 62.45 REMARK 500 ARG B 205 77.40 62.12 REMARK 500 ARG C 205 74.72 61.89 REMARK 500 PRO C 251 48.32 -84.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 58 N REMARK 620 2 SER A 58 O 90.0 REMARK 620 3 SER B 58 N 152.4 69.2 REMARK 620 4 SER B 58 O 70.8 92.4 91.4 REMARK 620 5 HOH B 439 O 118.8 120.5 88.1 144.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 ASP A 193 OD1 90.2 REMARK 620 3 HIS A 266 NE2 88.4 103.9 REMARK 620 4 OGA A 503 O2 84.2 92.8 161.8 REMARK 620 5 OGA A 503 O2' 97.4 170.5 82.2 82.3 REMARK 620 6 HOH A 614 O 172.8 89.4 84.7 103.0 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 191 NE2 REMARK 620 2 ASP B 193 OD1 91.2 REMARK 620 3 HIS B 266 NE2 93.7 98.0 REMARK 620 4 OGA B 303 O2 84.0 91.5 170.3 REMARK 620 5 OGA B 303 O2' 94.6 170.8 88.8 82.0 REMARK 620 6 HOH B 406 O 175.9 92.2 88.1 93.6 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 305 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 58 N REMARK 620 2 SER C 58 O 92.4 REMARK 620 3 SER C 58 N 0.0 92.4 REMARK 620 4 SER C 58 O 92.4 0.0 92.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 191 NE2 REMARK 620 2 ASP C 193 OD2 97.9 REMARK 620 3 HIS C 266 NE2 89.9 93.5 REMARK 620 4 OGA C 303 O2' 91.1 163.1 100.8 REMARK 620 5 OGA C 303 O1 80.8 81.8 168.9 85.6 REMARK 620 6 HOH C 417 O 169.5 89.6 97.0 79.9 93.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI C 305 DBREF 6T8M A 60 284 UNP Q86KR9 P4HA_DICDI 60 284 DBREF 6T8M B 60 284 UNP Q86KR9 P4HA_DICDI 60 284 DBREF 6T8M C 60 284 UNP Q86KR9 P4HA_DICDI 60 284 SEQADV 6T8M SER A 58 UNP Q86KR9 EXPRESSION TAG SEQADV 6T8M MET A 59 UNP Q86KR9 EXPRESSION TAG SEQADV 6T8M SER B 58 UNP Q86KR9 EXPRESSION TAG SEQADV 6T8M MET B 59 UNP Q86KR9 EXPRESSION TAG SEQADV 6T8M SER C 58 UNP Q86KR9 EXPRESSION TAG SEQADV 6T8M MET C 59 UNP Q86KR9 EXPRESSION TAG SEQRES 1 A 227 SER MET LYS ILE PHE ASN LYS GLU SER LEU ASN GLN LEU SEQRES 2 A 227 GLU LYS LYS GLY TYR LEU ILE ILE ASP ASN PHE LEU ASN SEQRES 3 A 227 ASP LEU ASN LYS ILE ASN LEU ILE TYR ASP GLU SER TYR SEQRES 4 A 227 ASN GLN PHE LYS GLU ASN LYS LEU ILE GLU ALA GLY MET SEQRES 5 A 227 ASN LYS GLY THR ASP LYS TRP LYS ASP LYS SER ILE ARG SEQRES 6 A 227 GLY ASP TYR ILE GLN TRP ILE HIS ARG ASP SER ASN SER SEQRES 7 A 227 ARG ILE GLN ASP LYS ASP LEU SER SER THR ILE ARG ASN SEQRES 8 A 227 ILE ASN TYR LEU LEU ASP LYS LEU ASP LEU ILE LYS ASN SEQRES 9 A 227 GLU PHE ASP ASN VAL ILE PRO ASN PHE ASN SER ILE LYS SEQRES 10 A 227 THR GLN THR GLN LEU ALA VAL TYR LEU ASN GLY GLY ARG SEQRES 11 A 227 TYR ILE LYS HIS ARG ASP SER PHE TYR SER SER GLU SER SEQRES 12 A 227 LEU THR ILE SER ARG ARG ILE THR MET ILE TYR TYR VAL SEQRES 13 A 227 ASN LYS ASP TRP LYS LYS GLY ASP GLY GLY GLU LEU ARG SEQRES 14 A 227 LEU TYR THR ASN ASN PRO ASN ASN THR ASN GLN LYS GLU SEQRES 15 A 227 LEU LYS GLN THR GLU GLU PHE ILE ASP ILE GLU PRO ILE SEQRES 16 A 227 ALA ASP ARG LEU LEU ILE PHE LEU SER PRO PHE LEU GLU SEQRES 17 A 227 HIS GLU VAL LEU GLN CYS ASN PHE GLU PRO ARG ILE ALA SEQRES 18 A 227 ILE THR THR TRP ILE TYR SEQRES 1 B 227 SER MET LYS ILE PHE ASN LYS GLU SER LEU ASN GLN LEU SEQRES 2 B 227 GLU LYS LYS GLY TYR LEU ILE ILE ASP ASN PHE LEU ASN SEQRES 3 B 227 ASP LEU ASN LYS ILE ASN LEU ILE TYR ASP GLU SER TYR SEQRES 4 B 227 ASN GLN PHE LYS GLU ASN LYS LEU ILE GLU ALA GLY MET SEQRES 5 B 227 ASN LYS GLY THR ASP LYS TRP LYS ASP LYS SER ILE ARG SEQRES 6 B 227 GLY ASP TYR ILE GLN TRP ILE HIS ARG ASP SER ASN SER SEQRES 7 B 227 ARG ILE GLN ASP LYS ASP LEU SER SER THR ILE ARG ASN SEQRES 8 B 227 ILE ASN TYR LEU LEU ASP LYS LEU ASP LEU ILE LYS ASN SEQRES 9 B 227 GLU PHE ASP ASN VAL ILE PRO ASN PHE ASN SER ILE LYS SEQRES 10 B 227 THR GLN THR GLN LEU ALA VAL TYR LEU ASN GLY GLY ARG SEQRES 11 B 227 TYR ILE LYS HIS ARG ASP SER PHE TYR SER SER GLU SER SEQRES 12 B 227 LEU THR ILE SER ARG ARG ILE THR MET ILE TYR TYR VAL SEQRES 13 B 227 ASN LYS ASP TRP LYS LYS GLY ASP GLY GLY GLU LEU ARG SEQRES 14 B 227 LEU TYR THR ASN ASN PRO ASN ASN THR ASN GLN LYS GLU SEQRES 15 B 227 LEU LYS GLN THR GLU GLU PHE ILE ASP ILE GLU PRO ILE SEQRES 16 B 227 ALA ASP ARG LEU LEU ILE PHE LEU SER PRO PHE LEU GLU SEQRES 17 B 227 HIS GLU VAL LEU GLN CYS ASN PHE GLU PRO ARG ILE ALA SEQRES 18 B 227 ILE THR THR TRP ILE TYR SEQRES 1 C 227 SER MET LYS ILE PHE ASN LYS GLU SER LEU ASN GLN LEU SEQRES 2 C 227 GLU LYS LYS GLY TYR LEU ILE ILE ASP ASN PHE LEU ASN SEQRES 3 C 227 ASP LEU ASN LYS ILE ASN LEU ILE TYR ASP GLU SER TYR SEQRES 4 C 227 ASN GLN PHE LYS GLU ASN LYS LEU ILE GLU ALA GLY MET SEQRES 5 C 227 ASN LYS GLY THR ASP LYS TRP LYS ASP LYS SER ILE ARG SEQRES 6 C 227 GLY ASP TYR ILE GLN TRP ILE HIS ARG ASP SER ASN SER SEQRES 7 C 227 ARG ILE GLN ASP LYS ASP LEU SER SER THR ILE ARG ASN SEQRES 8 C 227 ILE ASN TYR LEU LEU ASP LYS LEU ASP LEU ILE LYS ASN SEQRES 9 C 227 GLU PHE ASP ASN VAL ILE PRO ASN PHE ASN SER ILE LYS SEQRES 10 C 227 THR GLN THR GLN LEU ALA VAL TYR LEU ASN GLY GLY ARG SEQRES 11 C 227 TYR ILE LYS HIS ARG ASP SER PHE TYR SER SER GLU SER SEQRES 12 C 227 LEU THR ILE SER ARG ARG ILE THR MET ILE TYR TYR VAL SEQRES 13 C 227 ASN LYS ASP TRP LYS LYS GLY ASP GLY GLY GLU LEU ARG SEQRES 14 C 227 LEU TYR THR ASN ASN PRO ASN ASN THR ASN GLN LYS GLU SEQRES 15 C 227 LEU LYS GLN THR GLU GLU PHE ILE ASP ILE GLU PRO ILE SEQRES 16 C 227 ALA ASP ARG LEU LEU ILE PHE LEU SER PRO PHE LEU GLU SEQRES 17 C 227 HIS GLU VAL LEU GLN CYS ASN PHE GLU PRO ARG ILE ALA SEQRES 18 C 227 ILE THR THR TRP ILE TYR HET NI A 501 1 HET GOL A 502 6 HET OGA A 503 10 HET NI A 504 1 HET NI B 301 1 HET GOL B 302 6 HET OGA B 303 10 HET NI C 301 1 HET GOL C 302 6 HET OGA C 303 10 HET CL C 304 1 HET NI C 305 1 HETNAM NI NICKEL (II) ION HETNAM GOL GLYCEROL HETNAM OGA N-OXALYLGLYCINE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NI 5(NI 2+) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 OGA 3(C4 H5 N O5) FORMUL 14 CL CL 1- FORMUL 16 HOH *149(H2 O) HELIX 1 AA1 ASN A 63 LYS A 73 1 11 HELIX 2 AA2 ASP A 84 GLU A 101 1 18 HELIX 3 AA3 ILE A 146 ILE A 167 1 22 HELIX 4 AA4 ASN B 63 GLY B 74 1 12 HELIX 5 AA5 ASP B 84 GLU B 101 1 18 HELIX 6 AA6 LYS B 117 ILE B 121 5 5 HELIX 7 AA7 ILE B 146 ILE B 167 1 22 HELIX 8 AA8 ASN C 63 GLY C 74 1 12 HELIX 9 AA9 ASP C 84 GLU C 101 1 18 HELIX 10 AB1 LYS C 117 ILE C 121 5 5 HELIX 11 AB2 ILE C 146 ILE C 167 1 22 HELIX 12 AB3 LYS C 218 GLY C 222 5 5 SHEET 1 AA1 7 TYR A 75 ILE A 78 0 SHEET 2 AA1 7 ARG A 255 LEU A 260 -1 O ILE A 258 N LEU A 76 SHEET 3 AA1 7 ILE A 207 TYR A 212 -1 N ILE A 210 O LEU A 257 SHEET 4 AA1 7 ARG A 276 ILE A 283 -1 O ILE A 279 N TYR A 211 SHEET 5 AA1 7 THR A 175 TYR A 182 -1 N GLN A 176 O TRP A 282 SHEET 6 AA1 7 TYR A 125 ILE A 129 -1 N TYR A 125 O VAL A 181 SHEET 7 AA1 7 ILE A 105 GLU A 106 -1 N ILE A 105 O ILE A 126 SHEET 1 AA2 4 TYR A 188 HIS A 191 0 SHEET 2 AA2 4 HIS A 266 VAL A 268 -1 O HIS A 266 N HIS A 191 SHEET 3 AA2 4 LEU A 225 TYR A 228 -1 N ARG A 226 O GLU A 267 SHEET 4 AA2 4 PHE A 246 ILE A 249 -1 O ILE A 249 N LEU A 225 SHEET 1 AA3 7 TYR B 75 ILE B 78 0 SHEET 2 AA3 7 LEU B 256 LEU B 260 -1 O LEU B 256 N ILE B 78 SHEET 3 AA3 7 ILE B 207 TYR B 212 -1 N ILE B 210 O LEU B 257 SHEET 4 AA3 7 ARG B 276 ILE B 283 -1 O ILE B 279 N TYR B 211 SHEET 5 AA3 7 THR B 175 TYR B 182 -1 N GLN B 178 O THR B 280 SHEET 6 AA3 7 TYR B 125 ILE B 129 -1 N GLN B 127 O LEU B 179 SHEET 7 AA3 7 ILE B 105 GLU B 106 -1 N ILE B 105 O ILE B 126 SHEET 1 AA4 4 TYR B 188 HIS B 191 0 SHEET 2 AA4 4 HIS B 266 VAL B 268 -1 O VAL B 268 N TYR B 188 SHEET 3 AA4 4 LEU B 225 TYR B 228 -1 N ARG B 226 O GLU B 267 SHEET 4 AA4 4 PHE B 246 ILE B 249 -1 O ILE B 247 N LEU B 227 SHEET 1 AA5 7 TYR C 75 ILE C 78 0 SHEET 2 AA5 7 LEU C 256 LEU C 260 -1 O LEU C 256 N ILE C 78 SHEET 3 AA5 7 ILE C 207 TYR C 212 -1 N ILE C 210 O LEU C 257 SHEET 4 AA5 7 ARG C 276 ILE C 283 -1 O ILE C 279 N TYR C 211 SHEET 5 AA5 7 THR C 175 TYR C 182 -1 N GLN C 178 O THR C 280 SHEET 6 AA5 7 ASP C 124 ILE C 129 -1 N GLN C 127 O LEU C 179 SHEET 7 AA5 7 ILE C 105 GLU C 106 -1 N ILE C 105 O ILE C 126 SHEET 1 AA6 4 TYR C 188 HIS C 191 0 SHEET 2 AA6 4 HIS C 266 VAL C 268 -1 O HIS C 266 N HIS C 191 SHEET 3 AA6 4 LEU C 225 TYR C 228 -1 N ARG C 226 O GLU C 267 SHEET 4 AA6 4 PHE C 246 ILE C 249 -1 O ILE C 247 N LEU C 227 LINK N SER A 58 NI NI A 504 1555 1555 2.00 LINK O SER A 58 NI NI A 504 1555 1555 1.95 LINK NE2 HIS A 191 NI NI A 501 1555 1555 2.13 LINK OD1 ASP A 193 NI NI A 501 1555 1555 2.20 LINK NE2 HIS A 266 NI NI A 501 1555 1555 2.05 LINK NI NI A 501 O2 OGA A 503 1555 1555 2.21 LINK NI NI A 501 O2' OGA A 503 1555 1555 1.86 LINK NI NI A 501 O HOH A 614 1555 1555 2.19 LINK NI NI A 504 N SER B 58 1555 1555 1.95 LINK NI NI A 504 O SER B 58 1555 1555 1.85 LINK NI NI A 504 O HOH B 439 1555 1555 2.34 LINK NE2 HIS B 191 NI NI B 301 1555 1555 2.25 LINK OD1 ASP B 193 NI NI B 301 1555 1555 1.95 LINK NE2 HIS B 266 NI NI B 301 1555 1555 2.21 LINK NI NI B 301 O2 OGA B 303 1555 1555 2.22 LINK NI NI B 301 O2' OGA B 303 1555 1555 1.86 LINK NI NI B 301 O HOH B 406 1555 1555 2.41 LINK N SER C 58 NI NI C 305 1555 1555 1.90 LINK O SER C 58 NI NI C 305 1555 1555 1.94 LINK N SER C 58 NI NI C 305 1555 4555 1.90 LINK O SER C 58 NI NI C 305 1555 4555 1.94 LINK NE2 HIS C 191 NI NI C 301 1555 1555 2.36 LINK OD2 ASP C 193 NI NI C 301 1555 1555 1.78 LINK NE2 HIS C 266 NI NI C 301 1555 1555 2.04 LINK NI NI C 301 O2' OGA C 303 1555 1555 1.85 LINK NI NI C 301 O1 OGA C 303 1555 1555 2.14 LINK NI NI C 301 O HOH C 417 1555 1555 2.62 CISPEP 1 GLU A 274 PRO A 275 0 0.29 CISPEP 2 GLU B 274 PRO B 275 0 -5.26 CISPEP 3 GLU C 274 PRO C 275 0 -3.38 SITE 1 AC1 5 HIS A 191 ASP A 193 HIS A 266 OGA A 503 SITE 2 AC1 5 HOH A 614 SITE 1 AC2 4 PHE A 99 ASN A 102 LYS A 103 LEU A 104 SITE 1 AC3 15 ARG A 122 GLN A 178 TYR A 188 HIS A 191 SITE 2 AC3 15 ASP A 193 TYR A 212 LEU A 225 HIS A 266 SITE 3 AC3 15 VAL A 268 ARG A 276 NI A 501 HOH A 601 SITE 4 AC3 15 HOH A 609 HOH A 614 HOH A 641 SITE 1 AC4 3 SER A 58 SER B 58 HOH B 439 SITE 1 AC5 5 HIS B 191 ASP B 193 HIS B 266 OGA B 303 SITE 2 AC5 5 HOH B 406 SITE 1 AC6 7 ARG B 192 SER B 194 TYR B 196 PRO B 262 SITE 2 AC6 7 ILE C 121 TYR C 188 HIS C 191 SITE 1 AC7 16 ARG B 122 GLN B 178 TYR B 188 HIS B 191 SITE 2 AC7 16 ASP B 193 TYR B 212 LEU B 225 HIS B 266 SITE 3 AC7 16 VAL B 268 ARG B 276 NI B 301 HOH B 406 SITE 4 AC7 16 HOH B 407 HOH B 416 HOH B 417 HOH B 422 SITE 1 AC8 5 HIS C 191 ASP C 193 HIS C 266 OGA C 303 SITE 2 AC8 5 HOH C 417 SITE 1 AC9 4 TYR B 188 ARG C 192 SER C 194 PRO C 262 SITE 1 AD1 15 GLN C 178 TYR C 188 HIS C 191 ASP C 193 SITE 2 AD1 15 TYR C 212 LEU C 225 HIS C 266 VAL C 268 SITE 3 AD1 15 ARG C 276 NI C 301 HOH C 401 HOH C 407 SITE 4 AD1 15 HOH C 414 HOH C 415 HOH C 417 SITE 1 AD2 1 LYS C 160 SITE 1 AD3 1 SER C 58 CRYST1 45.216 81.781 379.210 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002637 0.00000