HEADER MEMBRANE PROTEIN 28-OCT-19 6T9N TITLE CRYOEM STRUCTURE OF HUMAN POLYCYSTIN-2/PKD2 IN UDM SUPPLEMENTED WITH TITLE 2 PI(4,5)P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCYSTIN-2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AUTOSOMAL DOMINANT POLYCYSTIC KIDNEY DISEASE TYPE II COMPND 5 PROTEIN,POLYCYSTIC KIDNEY DISEASE 2 PROTEIN,POLYCYSTWIN,R48321, COMPND 6 TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY P MEMBER 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PKD2, TRPP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFB-CT10HF-LIC KEYWDS ION CHANNEL, TRANSIENT RECEPTOR POTENTIAL CHANNEL, POLYCYSTIC KIDNEY KEYWDS 2 DISEASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Q.WANG,A.C.W.PIKE,M.GRIEBEN,A.BARONINA,C.NASRALLAH,C.SHINTRE, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,C.BOUNTRA,E.P.CARPENTER,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 29-JUL-20 6T9N 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 12-FEB-20 6T9N 1 JRNL REVDAT 2 18-DEC-19 6T9N 1 JRNL REVDAT 1 20-NOV-19 6T9N 0 JRNL AUTH Q.WANG,R.A.COREY,G.HEDGER,P.ARYAL,M.GRIEBEN,C.NASRALLAH, JRNL AUTH 2 A.BARONINA,A.C.W.PIKE,J.SHI,E.P.CARPENTER,M.S.P.SANSOM JRNL TITL LIPID INTERACTIONS OF A CILIARY MEMBRANE TRP CHANNEL: JRNL TITL 2 SIMULATION AND STRUCTURAL STUDIES OF POLYCYSTIN-2. JRNL REF STRUCTURE V. 28 169 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 31806353 JRNL DOI 10.1016/J.STR.2019.11.005 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GAUTOMATCH, EPU, CTFFIND, COOT, PHENIX, REMARK 3 RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5K47 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 85.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.960 REMARK 3 NUMBER OF PARTICLES : 51694 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: RELION AUTOREFINEMENT. UNMASKED RESOLUTION IS 3.12. REMARK 3 AFTER MASKING TO REMOVE THE DETERGENT MICELLE RESOLUTION IS 2.96A REMARK 4 REMARK 4 6T9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292105099. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : POLYCYSTIN-2 CHANNEL TETRAMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 4.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : DETERGENT (UDM) PURIFIED IN REMARK 245 PRESENCE OF LIPID PI(4,5)P2 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1597 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 52.20 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -497.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 184 REMARK 465 PRO A 185 REMARK 465 ARG A 186 REMARK 465 VAL A 187 REMARK 465 ALA A 188 REMARK 465 TRP A 189 REMARK 465 ALA A 190 REMARK 465 GLU A 191 REMARK 465 ARG A 192 REMARK 465 LEU A 193 REMARK 465 VAL A 194 REMARK 465 ARG A 195 REMARK 465 GLY A 196 REMARK 465 LEU A 197 REMARK 465 ARG A 198 REMARK 465 GLY A 199 REMARK 465 LEU A 200 REMARK 465 TRP A 201 REMARK 465 GLY A 202 REMARK 465 THR A 203 REMARK 465 ARG A 204 REMARK 465 LEU A 205 REMARK 465 MET A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 SER A 209 REMARK 465 SER A 210 REMARK 465 THR A 211 REMARK 465 ASN A 212 REMARK 465 PRO A 297 REMARK 465 SER A 298 REMARK 465 ASN A 299 REMARK 465 GLN A 300 REMARK 465 THR A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 ASP A 304 REMARK 465 SER A 701 REMARK 465 ASP A 702 REMARK 465 LEU A 703 REMARK 465 ILE A 704 REMARK 465 ARG A 705 REMARK 465 LYS A 706 REMARK 465 GLY A 707 REMARK 465 TYR A 708 REMARK 465 HIS A 709 REMARK 465 LYS A 710 REMARK 465 ALA A 711 REMARK 465 LEU A 712 REMARK 465 VAL A 713 REMARK 465 LYS A 714 REMARK 465 LEU A 715 REMARK 465 LYS A 716 REMARK 465 LEU A 717 REMARK 465 LYS A 718 REMARK 465 LYS A 719 REMARK 465 ASN A 720 REMARK 465 THR A 721 REMARK 465 VAL A 722 REMARK 465 ASP A 723 REMARK 465 ALA A 724 REMARK 465 GLU A 725 REMARK 465 ASN A 726 REMARK 465 LEU A 727 REMARK 465 TYR A 728 REMARK 465 PHE A 729 REMARK 465 GLN A 730 REMARK 465 MET B 184 REMARK 465 PRO B 185 REMARK 465 ARG B 186 REMARK 465 VAL B 187 REMARK 465 ALA B 188 REMARK 465 TRP B 189 REMARK 465 ALA B 190 REMARK 465 GLU B 191 REMARK 465 ARG B 192 REMARK 465 LEU B 193 REMARK 465 VAL B 194 REMARK 465 ARG B 195 REMARK 465 GLY B 196 REMARK 465 LEU B 197 REMARK 465 ARG B 198 REMARK 465 GLY B 199 REMARK 465 LEU B 200 REMARK 465 TRP B 201 REMARK 465 GLY B 202 REMARK 465 THR B 203 REMARK 465 ARG B 204 REMARK 465 LEU B 205 REMARK 465 MET B 206 REMARK 465 GLU B 207 REMARK 465 GLU B 208 REMARK 465 SER B 209 REMARK 465 SER B 210 REMARK 465 THR B 211 REMARK 465 ASN B 212 REMARK 465 PRO B 297 REMARK 465 SER B 298 REMARK 465 ASN B 299 REMARK 465 GLN B 300 REMARK 465 THR B 301 REMARK 465 GLU B 302 REMARK 465 ALA B 303 REMARK 465 ASP B 304 REMARK 465 SER B 701 REMARK 465 ASP B 702 REMARK 465 LEU B 703 REMARK 465 ILE B 704 REMARK 465 ARG B 705 REMARK 465 LYS B 706 REMARK 465 GLY B 707 REMARK 465 TYR B 708 REMARK 465 HIS B 709 REMARK 465 LYS B 710 REMARK 465 ALA B 711 REMARK 465 LEU B 712 REMARK 465 VAL B 713 REMARK 465 LYS B 714 REMARK 465 LEU B 715 REMARK 465 LYS B 716 REMARK 465 LEU B 717 REMARK 465 LYS B 718 REMARK 465 LYS B 719 REMARK 465 ASN B 720 REMARK 465 THR B 721 REMARK 465 VAL B 722 REMARK 465 ASP B 723 REMARK 465 ALA B 724 REMARK 465 GLU B 725 REMARK 465 ASN B 726 REMARK 465 LEU B 727 REMARK 465 TYR B 728 REMARK 465 PHE B 729 REMARK 465 GLN B 730 REMARK 465 MET C 184 REMARK 465 PRO C 185 REMARK 465 ARG C 186 REMARK 465 VAL C 187 REMARK 465 ALA C 188 REMARK 465 TRP C 189 REMARK 465 ALA C 190 REMARK 465 GLU C 191 REMARK 465 ARG C 192 REMARK 465 LEU C 193 REMARK 465 VAL C 194 REMARK 465 ARG C 195 REMARK 465 GLY C 196 REMARK 465 LEU C 197 REMARK 465 ARG C 198 REMARK 465 GLY C 199 REMARK 465 LEU C 200 REMARK 465 TRP C 201 REMARK 465 GLY C 202 REMARK 465 THR C 203 REMARK 465 ARG C 204 REMARK 465 LEU C 205 REMARK 465 MET C 206 REMARK 465 GLU C 207 REMARK 465 GLU C 208 REMARK 465 SER C 209 REMARK 465 SER C 210 REMARK 465 THR C 211 REMARK 465 ASN C 212 REMARK 465 PRO C 297 REMARK 465 SER C 298 REMARK 465 ASN C 299 REMARK 465 GLN C 300 REMARK 465 THR C 301 REMARK 465 GLU C 302 REMARK 465 ALA C 303 REMARK 465 ASP C 304 REMARK 465 SER C 701 REMARK 465 ASP C 702 REMARK 465 LEU C 703 REMARK 465 ILE C 704 REMARK 465 ARG C 705 REMARK 465 LYS C 706 REMARK 465 GLY C 707 REMARK 465 TYR C 708 REMARK 465 HIS C 709 REMARK 465 LYS C 710 REMARK 465 ALA C 711 REMARK 465 LEU C 712 REMARK 465 VAL C 713 REMARK 465 LYS C 714 REMARK 465 LEU C 715 REMARK 465 LYS C 716 REMARK 465 LEU C 717 REMARK 465 LYS C 718 REMARK 465 LYS C 719 REMARK 465 ASN C 720 REMARK 465 THR C 721 REMARK 465 VAL C 722 REMARK 465 ASP C 723 REMARK 465 ALA C 724 REMARK 465 GLU C 725 REMARK 465 ASN C 726 REMARK 465 LEU C 727 REMARK 465 TYR C 728 REMARK 465 PHE C 729 REMARK 465 GLN C 730 REMARK 465 MET D 184 REMARK 465 PRO D 185 REMARK 465 ARG D 186 REMARK 465 VAL D 187 REMARK 465 ALA D 188 REMARK 465 TRP D 189 REMARK 465 ALA D 190 REMARK 465 GLU D 191 REMARK 465 ARG D 192 REMARK 465 LEU D 193 REMARK 465 VAL D 194 REMARK 465 ARG D 195 REMARK 465 GLY D 196 REMARK 465 LEU D 197 REMARK 465 ARG D 198 REMARK 465 GLY D 199 REMARK 465 LEU D 200 REMARK 465 TRP D 201 REMARK 465 GLY D 202 REMARK 465 THR D 203 REMARK 465 ARG D 204 REMARK 465 LEU D 205 REMARK 465 MET D 206 REMARK 465 GLU D 207 REMARK 465 GLU D 208 REMARK 465 SER D 209 REMARK 465 SER D 210 REMARK 465 THR D 211 REMARK 465 ASN D 212 REMARK 465 PRO D 297 REMARK 465 SER D 298 REMARK 465 ASN D 299 REMARK 465 GLN D 300 REMARK 465 THR D 301 REMARK 465 GLU D 302 REMARK 465 ALA D 303 REMARK 465 ASP D 304 REMARK 465 SER D 701 REMARK 465 ASP D 702 REMARK 465 LEU D 703 REMARK 465 ILE D 704 REMARK 465 ARG D 705 REMARK 465 LYS D 706 REMARK 465 GLY D 707 REMARK 465 TYR D 708 REMARK 465 HIS D 709 REMARK 465 LYS D 710 REMARK 465 ALA D 711 REMARK 465 LEU D 712 REMARK 465 VAL D 713 REMARK 465 LYS D 714 REMARK 465 LEU D 715 REMARK 465 LYS D 716 REMARK 465 LEU D 717 REMARK 465 LYS D 718 REMARK 465 LYS D 719 REMARK 465 ASN D 720 REMARK 465 THR D 721 REMARK 465 VAL D 722 REMARK 465 ASP D 723 REMARK 465 ALA D 724 REMARK 465 GLU D 725 REMARK 465 ASN D 726 REMARK 465 LEU D 727 REMARK 465 TYR D 728 REMARK 465 PHE D 729 REMARK 465 GLN D 730 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 215 CD CE NZ REMARK 470 TYR A 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 295 CG SD CE REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 LYS A 372 CE NZ REMARK 470 GLU A 533 CG CD OE1 OE2 REMARK 470 GLU A 549 CG CD OE1 OE2 REMARK 470 LYS A 695 CD CE NZ REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 LEU A 700 CG CD1 CD2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 LYS B 215 CD CE NZ REMARK 470 TYR B 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 295 CG SD CE REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 ASP B 339 CG OD1 OD2 REMARK 470 GLU B 340 CG CD OE1 OE2 REMARK 470 LYS B 372 CE NZ REMARK 470 GLU B 533 CG CD OE1 OE2 REMARK 470 GLU B 549 CG CD OE1 OE2 REMARK 470 LYS B 695 CD CE NZ REMARK 470 GLU B 697 CG CD OE1 OE2 REMARK 470 GLU B 699 CG CD OE1 OE2 REMARK 470 LEU B 700 CG CD1 CD2 REMARK 470 ARG C 213 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 214 CG CD OE1 OE2 REMARK 470 LYS C 215 CD CE NZ REMARK 470 TYR C 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET C 295 CG SD CE REMARK 470 GLN C 296 CG CD OE1 NE2 REMARK 470 ASP C 339 CG OD1 OD2 REMARK 470 GLU C 340 CG CD OE1 OE2 REMARK 470 LYS C 372 CE NZ REMARK 470 GLU C 533 CG CD OE1 OE2 REMARK 470 GLU C 549 CG CD OE1 OE2 REMARK 470 LYS C 695 CD CE NZ REMARK 470 GLU C 697 CG CD OE1 OE2 REMARK 470 GLU C 699 CG CD OE1 OE2 REMARK 470 LEU C 700 CG CD1 CD2 REMARK 470 ARG D 213 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 214 CG CD OE1 OE2 REMARK 470 LYS D 215 CD CE NZ REMARK 470 TYR D 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET D 295 CG SD CE REMARK 470 GLN D 296 CG CD OE1 NE2 REMARK 470 ASP D 339 CG OD1 OD2 REMARK 470 GLU D 340 CG CD OE1 OE2 REMARK 470 LYS D 372 CE NZ REMARK 470 GLU D 533 CG CD OE1 OE2 REMARK 470 GLU D 549 CG CD OE1 OE2 REMARK 470 LYS D 695 CD CE NZ REMARK 470 GLU D 697 CG CD OE1 OE2 REMARK 470 GLU D 699 CG CD OE1 OE2 REMARK 470 LEU D 700 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 374 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B 374 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU C 374 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU D 374 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 312 -42.04 -133.93 REMARK 500 LEU A 395 -149.29 -90.53 REMARK 500 VAL A 413 85.32 55.31 REMARK 500 ASP A 416 -142.15 -131.56 REMARK 500 ASN A 434 61.00 60.31 REMARK 500 GLN A 456 110.59 -163.79 REMARK 500 LYS A 499 -88.54 -77.05 REMARK 500 ARG A 528 -57.59 -130.85 REMARK 500 SER A 530 47.96 -92.22 REMARK 500 VAL A 532 51.68 -99.42 REMARK 500 ASN A 578 45.64 -98.46 REMARK 500 GLU B 312 -42.12 -133.96 REMARK 500 LEU B 395 -149.36 -90.47 REMARK 500 VAL B 413 85.30 55.26 REMARK 500 ASP B 416 -142.21 -131.60 REMARK 500 ASN B 434 61.10 60.21 REMARK 500 GLN B 456 110.54 -163.84 REMARK 500 LYS B 499 -88.51 -77.05 REMARK 500 ARG B 528 -57.58 -130.76 REMARK 500 SER B 530 48.01 -92.27 REMARK 500 VAL B 532 51.67 -99.47 REMARK 500 ASN B 578 45.66 -98.40 REMARK 500 GLU C 312 -42.05 -133.88 REMARK 500 LEU C 395 -149.31 -90.51 REMARK 500 VAL C 413 85.24 55.30 REMARK 500 ASP C 416 -142.24 -131.59 REMARK 500 ASN C 434 61.10 60.26 REMARK 500 GLN C 456 110.61 -163.82 REMARK 500 LYS C 499 -88.53 -77.03 REMARK 500 ARG C 528 -57.53 -130.87 REMARK 500 SER C 530 47.99 -92.26 REMARK 500 VAL C 532 51.63 -99.42 REMARK 500 ASN C 578 45.56 -98.40 REMARK 500 GLU D 312 -42.09 -133.93 REMARK 500 LEU D 395 -149.37 -90.48 REMARK 500 VAL D 413 85.31 55.27 REMARK 500 ASP D 416 -142.17 -131.60 REMARK 500 ASN D 434 61.13 60.19 REMARK 500 GLN D 456 110.55 -163.82 REMARK 500 LYS D 499 -88.49 -77.11 REMARK 500 ARG D 528 -57.55 -130.85 REMARK 500 SER D 530 48.01 -92.28 REMARK 500 VAL D 532 51.70 -99.49 REMARK 500 ASN D 578 45.59 -98.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UMQ A 808 REMARK 610 UMQ A 810 REMARK 610 UMQ A 812 REMARK 610 UMQ A 813 REMARK 610 UMQ B 808 REMARK 610 UMQ B 810 REMARK 610 UMQ B 811 REMARK 610 UMQ B 812 REMARK 610 UMQ C 808 REMARK 610 UMQ C 810 REMARK 610 UMQ C 812 REMARK 610 UMQ C 813 REMARK 610 UMQ D 808 REMARK 610 UMQ D 810 REMARK 610 UMQ D 812 REMARK 610 UMQ D 813 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 815 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 641 O REMARK 620 2 LEU B 641 O 87.9 REMARK 620 3 LEU C 641 O 167.1 90.5 REMARK 620 4 LEU D 641 O 88.0 167.9 91.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10418 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF HUMAN POLYCYSTIN-2/PKD2 IN UDM SUPPLEMENTED REMARK 900 WITH PI(4,5)P2 DBREF 6T9N A 185 723 UNP Q13563 PKD2_HUMAN 185 723 DBREF 6T9N B 185 723 UNP Q13563 PKD2_HUMAN 185 723 DBREF 6T9N C 185 723 UNP Q13563 PKD2_HUMAN 185 723 DBREF 6T9N D 185 723 UNP Q13563 PKD2_HUMAN 185 723 SEQADV 6T9N MET A 184 UNP Q13563 INITIATING METHIONINE SEQADV 6T9N ALA A 724 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLU A 725 UNP Q13563 EXPRESSION TAG SEQADV 6T9N ASN A 726 UNP Q13563 EXPRESSION TAG SEQADV 6T9N LEU A 727 UNP Q13563 EXPRESSION TAG SEQADV 6T9N TYR A 728 UNP Q13563 EXPRESSION TAG SEQADV 6T9N PHE A 729 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLN A 730 UNP Q13563 EXPRESSION TAG SEQADV 6T9N MET B 184 UNP Q13563 INITIATING METHIONINE SEQADV 6T9N ALA B 724 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLU B 725 UNP Q13563 EXPRESSION TAG SEQADV 6T9N ASN B 726 UNP Q13563 EXPRESSION TAG SEQADV 6T9N LEU B 727 UNP Q13563 EXPRESSION TAG SEQADV 6T9N TYR B 728 UNP Q13563 EXPRESSION TAG SEQADV 6T9N PHE B 729 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLN B 730 UNP Q13563 EXPRESSION TAG SEQADV 6T9N MET C 184 UNP Q13563 INITIATING METHIONINE SEQADV 6T9N ALA C 724 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLU C 725 UNP Q13563 EXPRESSION TAG SEQADV 6T9N ASN C 726 UNP Q13563 EXPRESSION TAG SEQADV 6T9N LEU C 727 UNP Q13563 EXPRESSION TAG SEQADV 6T9N TYR C 728 UNP Q13563 EXPRESSION TAG SEQADV 6T9N PHE C 729 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLN C 730 UNP Q13563 EXPRESSION TAG SEQADV 6T9N MET D 184 UNP Q13563 INITIATING METHIONINE SEQADV 6T9N ALA D 724 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLU D 725 UNP Q13563 EXPRESSION TAG SEQADV 6T9N ASN D 726 UNP Q13563 EXPRESSION TAG SEQADV 6T9N LEU D 727 UNP Q13563 EXPRESSION TAG SEQADV 6T9N TYR D 728 UNP Q13563 EXPRESSION TAG SEQADV 6T9N PHE D 729 UNP Q13563 EXPRESSION TAG SEQADV 6T9N GLN D 730 UNP Q13563 EXPRESSION TAG SEQRES 1 A 547 MET PRO ARG VAL ALA TRP ALA GLU ARG LEU VAL ARG GLY SEQRES 2 A 547 LEU ARG GLY LEU TRP GLY THR ARG LEU MET GLU GLU SER SEQRES 3 A 547 SER THR ASN ARG GLU LYS TYR LEU LYS SER VAL LEU ARG SEQRES 4 A 547 GLU LEU VAL THR TYR LEU LEU PHE LEU ILE VAL LEU CYS SEQRES 5 A 547 ILE LEU THR TYR GLY MET MET SER SER ASN VAL TYR TYR SEQRES 6 A 547 TYR THR ARG MET MET SER GLN LEU PHE LEU ASP THR PRO SEQRES 7 A 547 VAL SER LYS THR GLU LYS THR ASN PHE LYS THR LEU SER SEQRES 8 A 547 SER MET GLU ASP PHE TRP LYS PHE THR GLU GLY SER LEU SEQRES 9 A 547 LEU ASP GLY LEU TYR TRP LYS MET GLN PRO SER ASN GLN SEQRES 10 A 547 THR GLU ALA ASP ASN ARG SER PHE ILE PHE TYR GLU ASN SEQRES 11 A 547 LEU LEU LEU GLY VAL PRO ARG ILE ARG GLN LEU ARG VAL SEQRES 12 A 547 ARG ASN GLY SER CYS SER ILE PRO GLN ASP LEU ARG ASP SEQRES 13 A 547 GLU ILE LYS GLU CYS TYR ASP VAL TYR SER VAL SER SER SEQRES 14 A 547 GLU ASP ARG ALA PRO PHE GLY PRO ARG ASN GLY THR ALA SEQRES 15 A 547 TRP ILE TYR THR SER GLU LYS ASP LEU ASN GLY SER SER SEQRES 16 A 547 HIS TRP GLY ILE ILE ALA THR TYR SER GLY ALA GLY TYR SEQRES 17 A 547 TYR LEU ASP LEU SER ARG THR ARG GLU GLU THR ALA ALA SEQRES 18 A 547 GLN VAL ALA SER LEU LYS LYS ASN VAL TRP LEU ASP ARG SEQRES 19 A 547 GLY THR ARG ALA THR PHE ILE ASP PHE SER VAL TYR ASN SEQRES 20 A 547 ALA ASN ILE ASN LEU PHE CYS VAL VAL ARG LEU LEU VAL SEQRES 21 A 547 GLU PHE PRO ALA THR GLY GLY VAL ILE PRO SER TRP GLN SEQRES 22 A 547 PHE GLN PRO LEU LYS LEU ILE ARG TYR VAL THR THR PHE SEQRES 23 A 547 ASP PHE PHE LEU ALA ALA CYS GLU ILE ILE PHE CYS PHE SEQRES 24 A 547 PHE ILE PHE TYR TYR VAL VAL GLU GLU ILE LEU GLU ILE SEQRES 25 A 547 ARG ILE HIS LYS LEU HIS TYR PHE ARG SER PHE TRP ASN SEQRES 26 A 547 CYS LEU ASP VAL VAL ILE VAL VAL LEU SER VAL VAL ALA SEQRES 27 A 547 ILE GLY ILE ASN ILE TYR ARG THR SER ASN VAL GLU VAL SEQRES 28 A 547 LEU LEU GLN PHE LEU GLU ASP GLN ASN THR PHE PRO ASN SEQRES 29 A 547 PHE GLU HIS LEU ALA TYR TRP GLN ILE GLN PHE ASN ASN SEQRES 30 A 547 ILE ALA ALA VAL THR VAL PHE PHE VAL TRP ILE LYS LEU SEQRES 31 A 547 PHE LYS PHE ILE ASN PHE ASN ARG THR MET SER GLN LEU SEQRES 32 A 547 SER THR THR MET SER ARG CYS ALA LYS ASP LEU PHE GLY SEQRES 33 A 547 PHE ALA ILE MET PHE PHE ILE ILE PHE LEU ALA TYR ALA SEQRES 34 A 547 GLN LEU ALA TYR LEU VAL PHE GLY THR GLN VAL ASP ASP SEQRES 35 A 547 PHE SER THR PHE GLN GLU CYS ILE PHE THR GLN PHE ARG SEQRES 36 A 547 ILE ILE LEU GLY ASP ILE ASN PHE ALA GLU ILE GLU GLU SEQRES 37 A 547 ALA ASN ARG VAL LEU GLY PRO ILE TYR PHE THR THR PHE SEQRES 38 A 547 VAL PHE PHE MET PHE PHE ILE LEU LEU ASN MET PHE LEU SEQRES 39 A 547 ALA ILE ILE ASN ASP THR TYR SER GLU VAL LYS SER ASP SEQRES 40 A 547 LEU ALA GLN GLN LYS ALA GLU MET GLU LEU SER ASP LEU SEQRES 41 A 547 ILE ARG LYS GLY TYR HIS LYS ALA LEU VAL LYS LEU LYS SEQRES 42 A 547 LEU LYS LYS ASN THR VAL ASP ALA GLU ASN LEU TYR PHE SEQRES 43 A 547 GLN SEQRES 1 B 547 MET PRO ARG VAL ALA TRP ALA GLU ARG LEU VAL ARG GLY SEQRES 2 B 547 LEU ARG GLY LEU TRP GLY THR ARG LEU MET GLU GLU SER SEQRES 3 B 547 SER THR ASN ARG GLU LYS TYR LEU LYS SER VAL LEU ARG SEQRES 4 B 547 GLU LEU VAL THR TYR LEU LEU PHE LEU ILE VAL LEU CYS SEQRES 5 B 547 ILE LEU THR TYR GLY MET MET SER SER ASN VAL TYR TYR SEQRES 6 B 547 TYR THR ARG MET MET SER GLN LEU PHE LEU ASP THR PRO SEQRES 7 B 547 VAL SER LYS THR GLU LYS THR ASN PHE LYS THR LEU SER SEQRES 8 B 547 SER MET GLU ASP PHE TRP LYS PHE THR GLU GLY SER LEU SEQRES 9 B 547 LEU ASP GLY LEU TYR TRP LYS MET GLN PRO SER ASN GLN SEQRES 10 B 547 THR GLU ALA ASP ASN ARG SER PHE ILE PHE TYR GLU ASN SEQRES 11 B 547 LEU LEU LEU GLY VAL PRO ARG ILE ARG GLN LEU ARG VAL SEQRES 12 B 547 ARG ASN GLY SER CYS SER ILE PRO GLN ASP LEU ARG ASP SEQRES 13 B 547 GLU ILE LYS GLU CYS TYR ASP VAL TYR SER VAL SER SER SEQRES 14 B 547 GLU ASP ARG ALA PRO PHE GLY PRO ARG ASN GLY THR ALA SEQRES 15 B 547 TRP ILE TYR THR SER GLU LYS ASP LEU ASN GLY SER SER SEQRES 16 B 547 HIS TRP GLY ILE ILE ALA THR TYR SER GLY ALA GLY TYR SEQRES 17 B 547 TYR LEU ASP LEU SER ARG THR ARG GLU GLU THR ALA ALA SEQRES 18 B 547 GLN VAL ALA SER LEU LYS LYS ASN VAL TRP LEU ASP ARG SEQRES 19 B 547 GLY THR ARG ALA THR PHE ILE ASP PHE SER VAL TYR ASN SEQRES 20 B 547 ALA ASN ILE ASN LEU PHE CYS VAL VAL ARG LEU LEU VAL SEQRES 21 B 547 GLU PHE PRO ALA THR GLY GLY VAL ILE PRO SER TRP GLN SEQRES 22 B 547 PHE GLN PRO LEU LYS LEU ILE ARG TYR VAL THR THR PHE SEQRES 23 B 547 ASP PHE PHE LEU ALA ALA CYS GLU ILE ILE PHE CYS PHE SEQRES 24 B 547 PHE ILE PHE TYR TYR VAL VAL GLU GLU ILE LEU GLU ILE SEQRES 25 B 547 ARG ILE HIS LYS LEU HIS TYR PHE ARG SER PHE TRP ASN SEQRES 26 B 547 CYS LEU ASP VAL VAL ILE VAL VAL LEU SER VAL VAL ALA SEQRES 27 B 547 ILE GLY ILE ASN ILE TYR ARG THR SER ASN VAL GLU VAL SEQRES 28 B 547 LEU LEU GLN PHE LEU GLU ASP GLN ASN THR PHE PRO ASN SEQRES 29 B 547 PHE GLU HIS LEU ALA TYR TRP GLN ILE GLN PHE ASN ASN SEQRES 30 B 547 ILE ALA ALA VAL THR VAL PHE PHE VAL TRP ILE LYS LEU SEQRES 31 B 547 PHE LYS PHE ILE ASN PHE ASN ARG THR MET SER GLN LEU SEQRES 32 B 547 SER THR THR MET SER ARG CYS ALA LYS ASP LEU PHE GLY SEQRES 33 B 547 PHE ALA ILE MET PHE PHE ILE ILE PHE LEU ALA TYR ALA SEQRES 34 B 547 GLN LEU ALA TYR LEU VAL PHE GLY THR GLN VAL ASP ASP SEQRES 35 B 547 PHE SER THR PHE GLN GLU CYS ILE PHE THR GLN PHE ARG SEQRES 36 B 547 ILE ILE LEU GLY ASP ILE ASN PHE ALA GLU ILE GLU GLU SEQRES 37 B 547 ALA ASN ARG VAL LEU GLY PRO ILE TYR PHE THR THR PHE SEQRES 38 B 547 VAL PHE PHE MET PHE PHE ILE LEU LEU ASN MET PHE LEU SEQRES 39 B 547 ALA ILE ILE ASN ASP THR TYR SER GLU VAL LYS SER ASP SEQRES 40 B 547 LEU ALA GLN GLN LYS ALA GLU MET GLU LEU SER ASP LEU SEQRES 41 B 547 ILE ARG LYS GLY TYR HIS LYS ALA LEU VAL LYS LEU LYS SEQRES 42 B 547 LEU LYS LYS ASN THR VAL ASP ALA GLU ASN LEU TYR PHE SEQRES 43 B 547 GLN SEQRES 1 C 547 MET PRO ARG VAL ALA TRP ALA GLU ARG LEU VAL ARG GLY SEQRES 2 C 547 LEU ARG GLY LEU TRP GLY THR ARG LEU MET GLU GLU SER SEQRES 3 C 547 SER THR ASN ARG GLU LYS TYR LEU LYS SER VAL LEU ARG SEQRES 4 C 547 GLU LEU VAL THR TYR LEU LEU PHE LEU ILE VAL LEU CYS SEQRES 5 C 547 ILE LEU THR TYR GLY MET MET SER SER ASN VAL TYR TYR SEQRES 6 C 547 TYR THR ARG MET MET SER GLN LEU PHE LEU ASP THR PRO SEQRES 7 C 547 VAL SER LYS THR GLU LYS THR ASN PHE LYS THR LEU SER SEQRES 8 C 547 SER MET GLU ASP PHE TRP LYS PHE THR GLU GLY SER LEU SEQRES 9 C 547 LEU ASP GLY LEU TYR TRP LYS MET GLN PRO SER ASN GLN SEQRES 10 C 547 THR GLU ALA ASP ASN ARG SER PHE ILE PHE TYR GLU ASN SEQRES 11 C 547 LEU LEU LEU GLY VAL PRO ARG ILE ARG GLN LEU ARG VAL SEQRES 12 C 547 ARG ASN GLY SER CYS SER ILE PRO GLN ASP LEU ARG ASP SEQRES 13 C 547 GLU ILE LYS GLU CYS TYR ASP VAL TYR SER VAL SER SER SEQRES 14 C 547 GLU ASP ARG ALA PRO PHE GLY PRO ARG ASN GLY THR ALA SEQRES 15 C 547 TRP ILE TYR THR SER GLU LYS ASP LEU ASN GLY SER SER SEQRES 16 C 547 HIS TRP GLY ILE ILE ALA THR TYR SER GLY ALA GLY TYR SEQRES 17 C 547 TYR LEU ASP LEU SER ARG THR ARG GLU GLU THR ALA ALA SEQRES 18 C 547 GLN VAL ALA SER LEU LYS LYS ASN VAL TRP LEU ASP ARG SEQRES 19 C 547 GLY THR ARG ALA THR PHE ILE ASP PHE SER VAL TYR ASN SEQRES 20 C 547 ALA ASN ILE ASN LEU PHE CYS VAL VAL ARG LEU LEU VAL SEQRES 21 C 547 GLU PHE PRO ALA THR GLY GLY VAL ILE PRO SER TRP GLN SEQRES 22 C 547 PHE GLN PRO LEU LYS LEU ILE ARG TYR VAL THR THR PHE SEQRES 23 C 547 ASP PHE PHE LEU ALA ALA CYS GLU ILE ILE PHE CYS PHE SEQRES 24 C 547 PHE ILE PHE TYR TYR VAL VAL GLU GLU ILE LEU GLU ILE SEQRES 25 C 547 ARG ILE HIS LYS LEU HIS TYR PHE ARG SER PHE TRP ASN SEQRES 26 C 547 CYS LEU ASP VAL VAL ILE VAL VAL LEU SER VAL VAL ALA SEQRES 27 C 547 ILE GLY ILE ASN ILE TYR ARG THR SER ASN VAL GLU VAL SEQRES 28 C 547 LEU LEU GLN PHE LEU GLU ASP GLN ASN THR PHE PRO ASN SEQRES 29 C 547 PHE GLU HIS LEU ALA TYR TRP GLN ILE GLN PHE ASN ASN SEQRES 30 C 547 ILE ALA ALA VAL THR VAL PHE PHE VAL TRP ILE LYS LEU SEQRES 31 C 547 PHE LYS PHE ILE ASN PHE ASN ARG THR MET SER GLN LEU SEQRES 32 C 547 SER THR THR MET SER ARG CYS ALA LYS ASP LEU PHE GLY SEQRES 33 C 547 PHE ALA ILE MET PHE PHE ILE ILE PHE LEU ALA TYR ALA SEQRES 34 C 547 GLN LEU ALA TYR LEU VAL PHE GLY THR GLN VAL ASP ASP SEQRES 35 C 547 PHE SER THR PHE GLN GLU CYS ILE PHE THR GLN PHE ARG SEQRES 36 C 547 ILE ILE LEU GLY ASP ILE ASN PHE ALA GLU ILE GLU GLU SEQRES 37 C 547 ALA ASN ARG VAL LEU GLY PRO ILE TYR PHE THR THR PHE SEQRES 38 C 547 VAL PHE PHE MET PHE PHE ILE LEU LEU ASN MET PHE LEU SEQRES 39 C 547 ALA ILE ILE ASN ASP THR TYR SER GLU VAL LYS SER ASP SEQRES 40 C 547 LEU ALA GLN GLN LYS ALA GLU MET GLU LEU SER ASP LEU SEQRES 41 C 547 ILE ARG LYS GLY TYR HIS LYS ALA LEU VAL LYS LEU LYS SEQRES 42 C 547 LEU LYS LYS ASN THR VAL ASP ALA GLU ASN LEU TYR PHE SEQRES 43 C 547 GLN SEQRES 1 D 547 MET PRO ARG VAL ALA TRP ALA GLU ARG LEU VAL ARG GLY SEQRES 2 D 547 LEU ARG GLY LEU TRP GLY THR ARG LEU MET GLU GLU SER SEQRES 3 D 547 SER THR ASN ARG GLU LYS TYR LEU LYS SER VAL LEU ARG SEQRES 4 D 547 GLU LEU VAL THR TYR LEU LEU PHE LEU ILE VAL LEU CYS SEQRES 5 D 547 ILE LEU THR TYR GLY MET MET SER SER ASN VAL TYR TYR SEQRES 6 D 547 TYR THR ARG MET MET SER GLN LEU PHE LEU ASP THR PRO SEQRES 7 D 547 VAL SER LYS THR GLU LYS THR ASN PHE LYS THR LEU SER SEQRES 8 D 547 SER MET GLU ASP PHE TRP LYS PHE THR GLU GLY SER LEU SEQRES 9 D 547 LEU ASP GLY LEU TYR TRP LYS MET GLN PRO SER ASN GLN SEQRES 10 D 547 THR GLU ALA ASP ASN ARG SER PHE ILE PHE TYR GLU ASN SEQRES 11 D 547 LEU LEU LEU GLY VAL PRO ARG ILE ARG GLN LEU ARG VAL SEQRES 12 D 547 ARG ASN GLY SER CYS SER ILE PRO GLN ASP LEU ARG ASP SEQRES 13 D 547 GLU ILE LYS GLU CYS TYR ASP VAL TYR SER VAL SER SER SEQRES 14 D 547 GLU ASP ARG ALA PRO PHE GLY PRO ARG ASN GLY THR ALA SEQRES 15 D 547 TRP ILE TYR THR SER GLU LYS ASP LEU ASN GLY SER SER SEQRES 16 D 547 HIS TRP GLY ILE ILE ALA THR TYR SER GLY ALA GLY TYR SEQRES 17 D 547 TYR LEU ASP LEU SER ARG THR ARG GLU GLU THR ALA ALA SEQRES 18 D 547 GLN VAL ALA SER LEU LYS LYS ASN VAL TRP LEU ASP ARG SEQRES 19 D 547 GLY THR ARG ALA THR PHE ILE ASP PHE SER VAL TYR ASN SEQRES 20 D 547 ALA ASN ILE ASN LEU PHE CYS VAL VAL ARG LEU LEU VAL SEQRES 21 D 547 GLU PHE PRO ALA THR GLY GLY VAL ILE PRO SER TRP GLN SEQRES 22 D 547 PHE GLN PRO LEU LYS LEU ILE ARG TYR VAL THR THR PHE SEQRES 23 D 547 ASP PHE PHE LEU ALA ALA CYS GLU ILE ILE PHE CYS PHE SEQRES 24 D 547 PHE ILE PHE TYR TYR VAL VAL GLU GLU ILE LEU GLU ILE SEQRES 25 D 547 ARG ILE HIS LYS LEU HIS TYR PHE ARG SER PHE TRP ASN SEQRES 26 D 547 CYS LEU ASP VAL VAL ILE VAL VAL LEU SER VAL VAL ALA SEQRES 27 D 547 ILE GLY ILE ASN ILE TYR ARG THR SER ASN VAL GLU VAL SEQRES 28 D 547 LEU LEU GLN PHE LEU GLU ASP GLN ASN THR PHE PRO ASN SEQRES 29 D 547 PHE GLU HIS LEU ALA TYR TRP GLN ILE GLN PHE ASN ASN SEQRES 30 D 547 ILE ALA ALA VAL THR VAL PHE PHE VAL TRP ILE LYS LEU SEQRES 31 D 547 PHE LYS PHE ILE ASN PHE ASN ARG THR MET SER GLN LEU SEQRES 32 D 547 SER THR THR MET SER ARG CYS ALA LYS ASP LEU PHE GLY SEQRES 33 D 547 PHE ALA ILE MET PHE PHE ILE ILE PHE LEU ALA TYR ALA SEQRES 34 D 547 GLN LEU ALA TYR LEU VAL PHE GLY THR GLN VAL ASP ASP SEQRES 35 D 547 PHE SER THR PHE GLN GLU CYS ILE PHE THR GLN PHE ARG SEQRES 36 D 547 ILE ILE LEU GLY ASP ILE ASN PHE ALA GLU ILE GLU GLU SEQRES 37 D 547 ALA ASN ARG VAL LEU GLY PRO ILE TYR PHE THR THR PHE SEQRES 38 D 547 VAL PHE PHE MET PHE PHE ILE LEU LEU ASN MET PHE LEU SEQRES 39 D 547 ALA ILE ILE ASN ASP THR TYR SER GLU VAL LYS SER ASP SEQRES 40 D 547 LEU ALA GLN GLN LYS ALA GLU MET GLU LEU SER ASP LEU SEQRES 41 D 547 ILE ARG LYS GLY TYR HIS LYS ALA LEU VAL LYS LEU LYS SEQRES 42 D 547 LEU LYS LYS ASN THR VAL ASP ALA GLU ASN LEU TYR PHE SEQRES 43 D 547 GLN HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET CLR A 801 28 HET NAG A 802 14 HET NAG A 803 14 HET UMQ A 806 34 HET UMQ A 807 34 HET UMQ A 808 23 HET UMQ A 809 34 HET UMQ A 810 23 HET UMQ A 811 34 HET UMQ A 812 23 HET UMQ A 813 23 HET UMQ A 814 34 HET CA A 815 1 HET CLR B 801 28 HET NAG B 802 14 HET NAG B 803 14 HET UMQ B 806 34 HET UMQ B 807 34 HET UMQ B 808 23 HET UMQ B 809 34 HET UMQ B 810 23 HET UMQ B 811 23 HET UMQ B 812 23 HET CLR C 801 28 HET NAG C 802 14 HET NAG C 803 14 HET UMQ C 806 34 HET UMQ C 807 34 HET UMQ C 808 23 HET UMQ C 809 34 HET UMQ C 810 23 HET UMQ C 811 34 HET UMQ C 812 23 HET UMQ C 813 23 HET CLR D 801 28 HET NAG D 802 14 HET NAG D 803 14 HET UMQ D 806 34 HET UMQ D 807 34 HET UMQ D 808 23 HET UMQ D 809 34 HET UMQ D 810 23 HET UMQ D 811 34 HET UMQ D 812 23 HET UMQ D 813 23 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CLR CHOLESTEROL HETNAM UMQ UNDECYL-MALTOSIDE HETNAM CA CALCIUM ION HETSYN UMQ UNDECYL-BETA-D-MALTOPYRANOSIDE FORMUL 5 NAG 16(C8 H15 N O6) FORMUL 9 CLR 4(C27 H46 O) FORMUL 12 UMQ 32(C23 H44 O11) FORMUL 21 CA CA 2+ HELIX 1 AA1 ARG A 213 MET A 242 1 30 HELIX 2 AA2 VAL A 246 LEU A 258 1 13 HELIX 3 AA3 SER A 275 GLY A 285 1 11 HELIX 4 AA4 GLY A 285 TYR A 292 1 8 HELIX 5 AA5 PRO A 334 ARG A 338 5 5 HELIX 6 AA6 THR A 398 ASN A 412 1 15 HELIX 7 AA7 THR A 467 ARG A 496 1 30 HELIX 8 AA8 PHE A 506 ARG A 528 1 23 HELIX 9 AA9 VAL A 532 LEU A 539 1 8 HELIX 10 AB1 PHE A 548 LEU A 573 1 26 HELIX 11 AB2 PHE A 574 PHE A 576 5 3 HELIX 12 AB3 ASN A 580 GLY A 620 1 41 HELIX 13 AB4 VAL A 623 SER A 627 5 5 HELIX 14 AB5 THR A 628 GLY A 642 1 15 HELIX 15 AB6 ASN A 645 ASN A 653 1 9 HELIX 16 AB7 VAL A 655 MET A 668 1 14 HELIX 17 AB8 LEU A 672 MET A 698 1 27 HELIX 18 AB9 GLU B 214 MET B 242 1 29 HELIX 19 AC1 VAL B 246 LEU B 258 1 13 HELIX 20 AC2 SER B 275 GLY B 285 1 11 HELIX 21 AC3 GLY B 285 TYR B 292 1 8 HELIX 22 AC4 PRO B 334 ARG B 338 5 5 HELIX 23 AC5 THR B 398 ASN B 412 1 15 HELIX 24 AC6 THR B 467 ARG B 496 1 30 HELIX 25 AC7 PHE B 506 ARG B 528 1 23 HELIX 26 AC8 VAL B 532 LEU B 539 1 8 HELIX 27 AC9 PHE B 548 LEU B 573 1 26 HELIX 28 AD1 PHE B 574 PHE B 576 5 3 HELIX 29 AD2 ASN B 580 GLY B 620 1 41 HELIX 30 AD3 VAL B 623 SER B 627 5 5 HELIX 31 AD4 THR B 628 GLY B 642 1 15 HELIX 32 AD5 ASN B 645 ASN B 653 1 9 HELIX 33 AD6 VAL B 655 MET B 668 1 14 HELIX 34 AD7 LEU B 672 MET B 698 1 27 HELIX 35 AD8 GLU C 214 MET C 242 1 29 HELIX 36 AD9 VAL C 246 LEU C 258 1 13 HELIX 37 AE1 SER C 275 GLY C 285 1 11 HELIX 38 AE2 GLY C 285 TYR C 292 1 8 HELIX 39 AE3 PRO C 334 ARG C 338 5 5 HELIX 40 AE4 THR C 398 ASN C 412 1 15 HELIX 41 AE5 THR C 467 ARG C 496 1 30 HELIX 42 AE6 PHE C 506 ARG C 528 1 23 HELIX 43 AE7 VAL C 532 LEU C 539 1 8 HELIX 44 AE8 PHE C 548 LEU C 573 1 26 HELIX 45 AE9 PHE C 574 PHE C 576 5 3 HELIX 46 AF1 ASN C 580 GLY C 620 1 41 HELIX 47 AF2 VAL C 623 SER C 627 5 5 HELIX 48 AF3 THR C 628 GLY C 642 1 15 HELIX 49 AF4 ASN C 645 ASN C 653 1 9 HELIX 50 AF5 VAL C 655 MET C 668 1 14 HELIX 51 AF6 LEU C 672 MET C 698 1 27 HELIX 52 AF7 GLU D 214 MET D 242 1 29 HELIX 53 AF8 VAL D 246 LEU D 258 1 13 HELIX 54 AF9 SER D 275 GLY D 285 1 11 HELIX 55 AG1 GLY D 285 TYR D 292 1 8 HELIX 56 AG2 PRO D 334 ARG D 338 5 5 HELIX 57 AG3 THR D 398 ASN D 412 1 15 HELIX 58 AG4 THR D 467 ARG D 496 1 30 HELIX 59 AG5 PHE D 506 ARG D 528 1 23 HELIX 60 AG6 VAL D 532 LEU D 539 1 8 HELIX 61 AG7 PHE D 548 LEU D 573 1 26 HELIX 62 AG8 PHE D 574 PHE D 576 5 3 HELIX 63 AG9 ASN D 580 GLY D 620 1 41 HELIX 64 AH1 VAL D 623 SER D 627 5 5 HELIX 65 AH2 THR D 628 GLY D 642 1 15 HELIX 66 AH3 ASN D 645 ASN D 653 1 9 HELIX 67 AH4 VAL D 655 MET D 668 1 14 HELIX 68 AH5 LEU D 672 MET D 698 1 27 SHEET 1 AA1 5 PHE A 308 ILE A 309 0 SHEET 2 AA1 5 ASN A 313 LEU A 315 -1 O ASN A 313 N ILE A 309 SHEET 3 AA1 5 THR A 419 ASN A 430 -1 O TYR A 429 N LEU A 314 SHEET 4 AA1 5 ARG A 320 ARG A 325 -1 N LEU A 324 O ARG A 420 SHEET 5 AA1 5 TYR A 391 ASP A 394 -1 O LEU A 393 N ILE A 321 SHEET 1 AA2 5 PHE A 308 ILE A 309 0 SHEET 2 AA2 5 ASN A 313 LEU A 315 -1 O ASN A 313 N ILE A 309 SHEET 3 AA2 5 THR A 419 ASN A 430 -1 O TYR A 429 N LEU A 314 SHEET 4 AA2 5 LEU A 435 GLU A 444 -1 O LEU A 441 N ILE A 424 SHEET 5 AA2 5 ILE A 452 LEU A 460 -1 O SER A 454 N LEU A 442 SHEET 1 AA3 2 HIS A 379 TRP A 380 0 SHEET 2 AA3 2 THR A 385 TYR A 386 -1 O TYR A 386 N HIS A 379 SHEET 1 AA4 5 PHE B 308 ILE B 309 0 SHEET 2 AA4 5 ASN B 313 LEU B 315 -1 O ASN B 313 N ILE B 309 SHEET 3 AA4 5 THR B 419 ASN B 430 -1 O TYR B 429 N LEU B 314 SHEET 4 AA4 5 ARG B 320 ARG B 325 -1 N LEU B 324 O ARG B 420 SHEET 5 AA4 5 TYR B 391 ASP B 394 -1 O LEU B 393 N ILE B 321 SHEET 1 AA5 5 PHE B 308 ILE B 309 0 SHEET 2 AA5 5 ASN B 313 LEU B 315 -1 O ASN B 313 N ILE B 309 SHEET 3 AA5 5 THR B 419 ASN B 430 -1 O TYR B 429 N LEU B 314 SHEET 4 AA5 5 LEU B 435 GLU B 444 -1 O LEU B 441 N ILE B 424 SHEET 5 AA5 5 ILE B 452 LEU B 460 -1 O SER B 454 N LEU B 442 SHEET 1 AA6 2 HIS B 379 TRP B 380 0 SHEET 2 AA6 2 THR B 385 TYR B 386 -1 O TYR B 386 N HIS B 379 SHEET 1 AA7 5 PHE C 308 ILE C 309 0 SHEET 2 AA7 5 ASN C 313 LEU C 315 -1 O ASN C 313 N ILE C 309 SHEET 3 AA7 5 THR C 419 ASN C 430 -1 O TYR C 429 N LEU C 314 SHEET 4 AA7 5 ARG C 320 ARG C 325 -1 N LEU C 324 O ARG C 420 SHEET 5 AA7 5 TYR C 391 ASP C 394 -1 O LEU C 393 N ILE C 321 SHEET 1 AA8 5 PHE C 308 ILE C 309 0 SHEET 2 AA8 5 ASN C 313 LEU C 315 -1 O ASN C 313 N ILE C 309 SHEET 3 AA8 5 THR C 419 ASN C 430 -1 O TYR C 429 N LEU C 314 SHEET 4 AA8 5 LEU C 435 GLU C 444 -1 O LEU C 441 N ILE C 424 SHEET 5 AA8 5 ILE C 452 LEU C 460 -1 O SER C 454 N LEU C 442 SHEET 1 AA9 2 HIS C 379 TRP C 380 0 SHEET 2 AA9 2 THR C 385 TYR C 386 -1 O TYR C 386 N HIS C 379 SHEET 1 AB1 5 PHE D 308 ILE D 309 0 SHEET 2 AB1 5 ASN D 313 LEU D 315 -1 O ASN D 313 N ILE D 309 SHEET 3 AB1 5 THR D 419 ASN D 430 -1 O TYR D 429 N LEU D 314 SHEET 4 AB1 5 ARG D 320 ARG D 325 -1 N LEU D 324 O ARG D 420 SHEET 5 AB1 5 TYR D 391 ASP D 394 -1 O LEU D 393 N ILE D 321 SHEET 1 AB2 5 PHE D 308 ILE D 309 0 SHEET 2 AB2 5 ASN D 313 LEU D 315 -1 O ASN D 313 N ILE D 309 SHEET 3 AB2 5 THR D 419 ASN D 430 -1 O TYR D 429 N LEU D 314 SHEET 4 AB2 5 LEU D 435 GLU D 444 -1 O LEU D 441 N ILE D 424 SHEET 5 AB2 5 ILE D 452 LEU D 460 -1 O SER D 454 N LEU D 442 SHEET 1 AB3 2 HIS D 379 TRP D 380 0 SHEET 2 AB3 2 THR D 385 TYR D 386 -1 O TYR D 386 N HIS D 379 SSBOND 1 CYS A 331 CYS A 344 1555 1555 2.04 SSBOND 2 CYS B 331 CYS B 344 1555 1555 2.04 SSBOND 3 CYS C 331 CYS C 344 1555 1555 2.04 SSBOND 4 CYS D 331 CYS D 344 1555 1555 2.04 LINK ND2 ASN A 328 C1 NAG A 802 1555 1555 1.43 LINK ND2 ASN A 362 C1 NAG A 803 1555 1555 1.45 LINK ND2 ASN A 375 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 328 C1 NAG B 802 1555 1555 1.43 LINK ND2 ASN B 362 C1 NAG B 803 1555 1555 1.45 LINK ND2 ASN B 375 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN C 328 C1 NAG C 802 1555 1555 1.43 LINK ND2 ASN C 362 C1 NAG C 803 1555 1555 1.45 LINK ND2 ASN C 375 C1 NAG G 1 1555 1555 1.43 LINK ND2 ASN D 328 C1 NAG D 802 1555 1555 1.43 LINK ND2 ASN D 362 C1 NAG D 803 1555 1555 1.45 LINK ND2 ASN D 375 C1 NAG H 1 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O LEU A 641 CA CA A 815 1555 1555 2.62 LINK CA CA A 815 O LEU B 641 1555 1555 2.64 LINK CA CA A 815 O LEU C 641 1555 1555 2.61 LINK CA CA A 815 O LEU D 641 1555 1555 2.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000