HEADER TRANSFERASE 31-OCT-19 6TB0 TITLE CRYSTAL STRUCTURE OF THERMOSTABLE OMEGA TRANSAMINASE 4-FOLD MUTANT TITLE 2 FROM PSEUDOMONAS JESSENII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 GENE: CMK94_18730, DIU04_17820; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSAMINASE, AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CAPRA,H.J.ROZEBOOM,A.M.W.H.THUNNISSEN,D.B.JANSSEN REVDAT 3 24-JAN-24 6TB0 1 REMARK REVDAT 2 30-SEP-20 6TB0 1 JRNL REVDAT 1 15-JUL-20 6TB0 0 JRNL AUTH Q.MENG,N.CAPRA,C.M.PALACIO,E.LANFRANCHI,M.OTZEN, JRNL AUTH 2 L.Z.VAN SCHIE,H.J.ROZEBOOM,A.W.H.THUNNISSEN,H.J.WIJMA, JRNL AUTH 3 D.B.JANSSEN JRNL TITL ROBUST OMEGA-TRANSAMINASES BY COMPUTATIONAL STABILIZATION OF JRNL TITL 2 THE SUBUNIT INTERFACE. JRNL REF ACS CATALYSIS V. 10 2915 2020 JRNL REFN ESSN 2155-5435 JRNL PMID 32953233 JRNL DOI 10.1021/ACSCATAL.9B05223 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 331 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 626 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.278 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7219 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6680 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9785 ; 1.487 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15504 ; 1.439 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 916 ; 6.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 357 ;34.968 ;22.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1174 ;12.799 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 911 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8182 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1489 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 455 B 6 455 14690 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 1301 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7489 28.0601 -7.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: 0.0258 REMARK 3 T33: 0.0534 T12: 0.0023 REMARK 3 T13: 0.0227 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.4277 L22: 0.8298 REMARK 3 L33: 0.4480 L12: 0.0357 REMARK 3 L13: 0.0868 L23: 0.4983 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0101 S13: -0.0896 REMARK 3 S21: 0.0868 S22: -0.0021 S23: 0.1385 REMARK 3 S31: 0.0543 S32: -0.0435 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 1401 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3510 53.4107 1.3339 REMARK 3 T TENSOR REMARK 3 T11: 0.0250 T22: 0.0426 REMARK 3 T33: 0.0250 T12: 0.0120 REMARK 3 T13: -0.0057 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1466 L22: 0.9018 REMARK 3 L33: 0.3440 L12: 0.1674 REMARK 3 L13: 0.0276 L23: 0.5119 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.0180 S13: 0.0311 REMARK 3 S21: -0.0055 S22: 0.0788 S23: -0.0415 REMARK 3 S31: 0.0041 S32: 0.0555 S33: -0.0516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6TB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292105139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6G4B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SUCCINIC ACID, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.48250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.82750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 457 REMARK 465 GLY A 458 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 445 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -37.49 -133.42 REMARK 500 SER A 65 41.41 -149.87 REMARK 500 THR A 79 -63.32 -97.92 REMARK 500 HIS A 88 -4.66 76.04 REMARK 500 LYS A 138 67.35 -119.22 REMARK 500 SER A 146 -163.12 -126.42 REMARK 500 THR A 239 -2.30 77.50 REMARK 500 PHE A 264 49.93 74.27 REMARK 500 GLN A 279 76.43 -114.85 REMARK 500 SER A 286 -156.54 -165.65 REMARK 500 LYS A 287 -97.23 55.48 REMARK 500 SER A 292 12.27 58.09 REMARK 500 SER A 292 12.34 57.65 REMARK 500 HIS A 328 130.89 -39.05 REMARK 500 GLN A 396 -63.84 68.75 REMARK 500 CYS A 426 58.74 -153.18 REMARK 500 SER B 59 -35.02 -133.15 REMARK 500 SER B 65 40.34 -150.80 REMARK 500 THR B 79 -63.15 -96.44 REMARK 500 HIS B 88 -3.88 75.40 REMARK 500 LYS B 138 64.49 -118.66 REMARK 500 THR B 239 -2.52 77.05 REMARK 500 PHE B 264 51.13 73.24 REMARK 500 GLN B 279 77.66 -112.65 REMARK 500 SER B 286 -155.84 -165.90 REMARK 500 LYS B 287 -98.18 55.90 REMARK 500 SER B 292 12.17 59.73 REMARK 500 SER B 292 14.08 59.05 REMARK 500 HIS B 328 126.92 -37.24 REMARK 500 GLN B 396 -145.39 54.09 REMARK 500 CYS B 426 60.78 -150.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 1001 and LYS B REMARK 800 287 DBREF1 6TB0 A 6 455 UNP A0A2D8IND4_PSESP DBREF2 6TB0 A A0A2D8IND4 6 455 DBREF1 6TB0 B 6 455 UNP A0A2D8IND4_PSESP DBREF2 6TB0 B A0A2D8IND4 6 455 SEQADV 6TB0 ALA A 9 UNP A0A2D8IND PRO 9 ENGINEERED MUTATION SEQADV 6TB0 GLN A 38 UNP A0A2D8IND GLU 38 ENGINEERED MUTATION SEQADV 6TB0 ASP A 87 UNP A0A2D8IND SER 87 ENGINEERED MUTATION SEQADV 6TB0 VAL A 154 UNP A0A2D8IND ILE 154 ENGINEERED MUTATION SEQADV 6TB0 PRO A 456 UNP A0A2D8IND EXPRESSION TAG SEQADV 6TB0 GLY A 457 UNP A0A2D8IND EXPRESSION TAG SEQADV 6TB0 GLY A 458 UNP A0A2D8IND EXPRESSION TAG SEQADV 6TB0 ALA B 9 UNP A0A2D8IND PRO 9 ENGINEERED MUTATION SEQADV 6TB0 GLN B 38 UNP A0A2D8IND GLU 38 ENGINEERED MUTATION SEQADV 6TB0 ASP B 87 UNP A0A2D8IND SER 87 ENGINEERED MUTATION SEQADV 6TB0 VAL B 154 UNP A0A2D8IND ILE 154 ENGINEERED MUTATION SEQADV 6TB0 PRO B 456 UNP A0A2D8IND EXPRESSION TAG SEQADV 6TB0 GLY B 457 UNP A0A2D8IND EXPRESSION TAG SEQADV 6TB0 GLY B 458 UNP A0A2D8IND EXPRESSION TAG SEQRES 1 A 453 SER SER LEU ALA GLU LYS ASP ILE GLN TYR GLN LEU HIS SEQRES 2 A 453 PRO TYR THR ASN ALA ARG LEU HIS GLN GLU LEU GLY PRO SEQRES 3 A 453 LEU ILE ILE GLU ARG GLY GLN GLY ILE TYR VAL TYR ASP SEQRES 4 A 453 ASP GLN GLY LYS GLY TYR ILE GLU ALA MET ALA GLY LEU SEQRES 5 A 453 TRP SER ALA ALA LEU GLY PHE SER ASN GLN ARG LEU ILE SEQRES 6 A 453 LYS ALA ALA GLU GLN GLN PHE ASN THR LEU PRO PHE TYR SEQRES 7 A 453 HIS LEU PHE ASP HIS LYS SER HIS ARG PRO SER ILE GLU SEQRES 8 A 453 LEU ALA GLU LYS LEU ILE GLU MET ALA PRO VAL PRO MET SEQRES 9 A 453 SER LYS VAL PHE PHE THR ASN SER GLY SER GLU ALA ASN SEQRES 10 A 453 ASP THR VAL VAL LYS MET VAL TRP TYR LEU ASN ASN ALA SEQRES 11 A 453 LEU GLY LYS PRO ALA LYS LYS LYS PHE ILE SER ARG VAL SEQRES 12 A 453 ASN GLY TYR HIS GLY VAL THR VAL ALA SER ALA SER LEU SEQRES 13 A 453 THR GLY LEU PRO GLY ASN GLN ARG GLY PHE ASP LEU PRO SEQRES 14 A 453 LEU PRO GLY PHE LEU HIS VAL GLY CYS PRO HIS HIS TYR SEQRES 15 A 453 ARG PHE ALA LEU ALA GLY GLU SER GLU GLU HIS PHE ALA SEQRES 16 A 453 ASP ARG LEU ALA VAL GLU LEU GLU GLN LYS ILE LEU ALA SEQRES 17 A 453 GLU GLY PRO GLU THR ILE ALA ALA PHE ILE GLY GLU PRO SEQRES 18 A 453 LEU MET GLY ALA GLY GLY VAL ILE VAL PRO PRO ARG THR SEQRES 19 A 453 TYR TRP GLU LYS ILE GLN LYS VAL CYS ARG LYS TYR ASP SEQRES 20 A 453 ILE LEU VAL ILE ALA ASP GLU VAL ILE CYS GLY PHE GLY SEQRES 21 A 453 ARG THR GLY GLN MET PHE GLY SER GLN THR PHE GLY ILE SEQRES 22 A 453 GLN PRO ASP ILE MET VAL LEU SER LYS GLN LEU SER SER SEQRES 23 A 453 SER TYR GLN PRO ILE ALA ALA ILE LEU ILE ASN ALA PRO SEQRES 24 A 453 VAL PHE GLU GLY ILE ALA ASP GLN SER GLN ALA LEU GLY SEQRES 25 A 453 ALA LEU GLY HIS GLY PHE THR GLY SER GLY HIS PRO VAL SEQRES 26 A 453 ALA THR ALA VAL ALA LEU GLU ASN LEU LYS ILE ILE GLU SEQRES 27 A 453 GLU GLU SER LEU VAL GLU HIS ALA ALA GLN MET GLY GLN SEQRES 28 A 453 LEU LEU ARG SER GLY LEU GLN HIS PHE ILE ASP HIS PRO SEQRES 29 A 453 LEU VAL GLY GLU ILE ARG GLY CYS GLY LEU ILE ALA ALA SEQRES 30 A 453 VAL GLU LEU VAL GLY ASP ARG VAL SER LYS ALA PRO TYR SEQRES 31 A 453 GLN ALA LEU GLY THR LEU GLY ARG TYR MET ALA GLY ARG SEQRES 32 A 453 ALA GLN GLU HIS GLY MET ILE THR ARG ALA MET GLY ASP SEQRES 33 A 453 ALA VAL ALA PHE CYS PRO PRO LEU ILE VAL ASN GLU GLN SEQRES 34 A 453 GLU VAL GLY MET ILE VAL GLU ARG PHE ALA ARG ALA LEU SEQRES 35 A 453 ASP ASP THR THR GLN TRP VAL GLY PRO GLY GLY SEQRES 1 B 453 SER SER LEU ALA GLU LYS ASP ILE GLN TYR GLN LEU HIS SEQRES 2 B 453 PRO TYR THR ASN ALA ARG LEU HIS GLN GLU LEU GLY PRO SEQRES 3 B 453 LEU ILE ILE GLU ARG GLY GLN GLY ILE TYR VAL TYR ASP SEQRES 4 B 453 ASP GLN GLY LYS GLY TYR ILE GLU ALA MET ALA GLY LEU SEQRES 5 B 453 TRP SER ALA ALA LEU GLY PHE SER ASN GLN ARG LEU ILE SEQRES 6 B 453 LYS ALA ALA GLU GLN GLN PHE ASN THR LEU PRO PHE TYR SEQRES 7 B 453 HIS LEU PHE ASP HIS LYS SER HIS ARG PRO SER ILE GLU SEQRES 8 B 453 LEU ALA GLU LYS LEU ILE GLU MET ALA PRO VAL PRO MET SEQRES 9 B 453 SER LYS VAL PHE PHE THR ASN SER GLY SER GLU ALA ASN SEQRES 10 B 453 ASP THR VAL VAL LYS MET VAL TRP TYR LEU ASN ASN ALA SEQRES 11 B 453 LEU GLY LYS PRO ALA LYS LYS LYS PHE ILE SER ARG VAL SEQRES 12 B 453 ASN GLY TYR HIS GLY VAL THR VAL ALA SER ALA SER LEU SEQRES 13 B 453 THR GLY LEU PRO GLY ASN GLN ARG GLY PHE ASP LEU PRO SEQRES 14 B 453 LEU PRO GLY PHE LEU HIS VAL GLY CYS PRO HIS HIS TYR SEQRES 15 B 453 ARG PHE ALA LEU ALA GLY GLU SER GLU GLU HIS PHE ALA SEQRES 16 B 453 ASP ARG LEU ALA VAL GLU LEU GLU GLN LYS ILE LEU ALA SEQRES 17 B 453 GLU GLY PRO GLU THR ILE ALA ALA PHE ILE GLY GLU PRO SEQRES 18 B 453 LEU MET GLY ALA GLY GLY VAL ILE VAL PRO PRO ARG THR SEQRES 19 B 453 TYR TRP GLU LYS ILE GLN LYS VAL CYS ARG LYS TYR ASP SEQRES 20 B 453 ILE LEU VAL ILE ALA ASP GLU VAL ILE CYS GLY PHE GLY SEQRES 21 B 453 ARG THR GLY GLN MET PHE GLY SER GLN THR PHE GLY ILE SEQRES 22 B 453 GLN PRO ASP ILE MET VAL LEU SER LYS GLN LEU SER SER SEQRES 23 B 453 SER TYR GLN PRO ILE ALA ALA ILE LEU ILE ASN ALA PRO SEQRES 24 B 453 VAL PHE GLU GLY ILE ALA ASP GLN SER GLN ALA LEU GLY SEQRES 25 B 453 ALA LEU GLY HIS GLY PHE THR GLY SER GLY HIS PRO VAL SEQRES 26 B 453 ALA THR ALA VAL ALA LEU GLU ASN LEU LYS ILE ILE GLU SEQRES 27 B 453 GLU GLU SER LEU VAL GLU HIS ALA ALA GLN MET GLY GLN SEQRES 28 B 453 LEU LEU ARG SER GLY LEU GLN HIS PHE ILE ASP HIS PRO SEQRES 29 B 453 LEU VAL GLY GLU ILE ARG GLY CYS GLY LEU ILE ALA ALA SEQRES 30 B 453 VAL GLU LEU VAL GLY ASP ARG VAL SER LYS ALA PRO TYR SEQRES 31 B 453 GLN ALA LEU GLY THR LEU GLY ARG TYR MET ALA GLY ARG SEQRES 32 B 453 ALA GLN GLU HIS GLY MET ILE THR ARG ALA MET GLY ASP SEQRES 33 B 453 ALA VAL ALA PHE CYS PRO PRO LEU ILE VAL ASN GLU GLN SEQRES 34 B 453 GLU VAL GLY MET ILE VAL GLU ARG PHE ALA ARG ALA LEU SEQRES 35 B 453 ASP ASP THR THR GLN TRP VAL GLY PRO GLY GLY HET PLP A1001 15 HET GOL A1002 6 HET GOL A1003 6 HET PLP B1001 15 HET SIN B1002 8 HET GOL B1003 6 HET GOL B1004 6 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM SIN SUCCINIC ACID HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 SIN C4 H6 O4 FORMUL 10 HOH *626(H2 O) HELIX 1 AA1 SER A 7 GLN A 16 1 10 HELIX 2 AA2 ASN A 22 GLY A 30 1 9 HELIX 3 AA3 MET A 54 SER A 59 1 6 HELIX 4 AA4 ASN A 66 ASN A 78 1 13 HELIX 5 AA5 LEU A 85 ASP A 87 5 3 HELIX 6 AA6 HIS A 91 ALA A 105 1 15 HELIX 7 AA7 SER A 117 LEU A 136 1 20 HELIX 8 AA8 ALA A 157 THR A 162 1 6 HELIX 9 AA9 LEU A 164 GLN A 168 5 5 HELIX 10 AB1 HIS A 185 ALA A 190 1 6 HELIX 11 AB2 SER A 195 GLY A 215 1 21 HELIX 12 AB3 THR A 239 TYR A 251 1 13 HELIX 13 AB4 PHE A 271 GLY A 277 1 7 HELIX 14 AB5 SER A 286 SER A 291 5 6 HELIX 15 AB6 ASN A 302 LEU A 316 1 15 HELIX 16 AB7 HIS A 328 GLU A 345 1 18 HELIX 17 AB8 SER A 346 HIS A 364 1 19 HELIX 18 AB9 GLY A 399 HIS A 412 1 14 HELIX 19 AC1 ASN A 432 GLY A 455 1 24 HELIX 20 AC2 SER B 7 GLN B 16 1 10 HELIX 21 AC3 ASN B 22 GLY B 30 1 9 HELIX 22 AC4 MET B 54 SER B 59 1 6 HELIX 23 AC5 ASN B 66 LEU B 80 1 15 HELIX 24 AC6 LEU B 85 ASP B 87 5 3 HELIX 25 AC7 HIS B 91 ALA B 105 1 15 HELIX 26 AC8 SER B 117 LEU B 136 1 20 HELIX 27 AC9 ALA B 157 THR B 162 1 6 HELIX 28 AD1 LEU B 164 GLN B 168 5 5 HELIX 29 AD2 HIS B 185 ALA B 190 1 6 HELIX 30 AD3 SER B 195 GLY B 215 1 21 HELIX 31 AD4 THR B 239 TYR B 251 1 13 HELIX 32 AD5 PHE B 271 GLY B 277 1 7 HELIX 33 AD6 SER B 286 SER B 291 5 6 HELIX 34 AD7 ASN B 302 LEU B 316 1 15 HELIX 35 AD8 HIS B 328 GLU B 345 1 18 HELIX 36 AD9 SER B 346 HIS B 364 1 19 HELIX 37 AE1 GLY B 399 HIS B 412 1 14 HELIX 38 AE2 ASN B 432 GLY B 455 1 24 SHEET 1 AA1 5 MET A 414 ILE A 415 0 SHEET 2 AA1 5 GLY A 49 GLU A 52 1 N ILE A 51 O ILE A 415 SHEET 3 AA1 5 TYR A 41 ASP A 44 -1 N VAL A 42 O TYR A 50 SHEET 4 AA1 5 LEU A 32 GLN A 38 -1 N GLU A 35 O TYR A 43 SHEET 5 AA1 5 LYS B 89 SER B 90 1 O SER B 90 N ILE A 34 SHEET 1 AA2 5 LYS A 89 SER A 90 0 SHEET 2 AA2 5 LEU B 32 GLN B 38 1 O ILE B 34 N SER A 90 SHEET 3 AA2 5 TYR B 41 ASP B 44 -1 O TYR B 43 N GLU B 35 SHEET 4 AA2 5 GLY B 49 GLU B 52 -1 O TYR B 50 N VAL B 42 SHEET 5 AA2 5 MET B 414 ILE B 415 1 O ILE B 415 N ILE B 51 SHEET 1 AA3 7 LYS A 111 THR A 115 0 SHEET 2 AA3 7 ALA A 297 ILE A 301 -1 O ILE A 299 N PHE A 113 SHEET 3 AA3 7 ILE A 282 LEU A 285 -1 N LEU A 285 O ALA A 298 SHEET 4 AA3 7 LEU A 254 ASP A 258 1 N ALA A 257 O ILE A 282 SHEET 5 AA3 7 ILE A 219 GLY A 224 1 N PHE A 222 O LEU A 254 SHEET 6 AA3 7 LYS A 143 ARG A 147 1 N LYS A 143 O ALA A 220 SHEET 7 AA3 7 PHE A 178 VAL A 181 1 O LEU A 179 N PHE A 144 SHEET 1 AA4 4 VAL A 371 CYS A 377 0 SHEET 2 AA4 4 ILE A 380 LEU A 385 -1 O GLU A 384 N GLY A 372 SHEET 3 AA4 4 ALA A 422 PHE A 425 -1 O PHE A 425 N ALA A 381 SHEET 4 AA4 4 ALA A 418 MET A 419 -1 N MET A 419 O ALA A 422 SHEET 1 AA5 7 LYS B 111 THR B 115 0 SHEET 2 AA5 7 ALA B 297 ILE B 301 -1 O ILE B 299 N PHE B 113 SHEET 3 AA5 7 ILE B 282 LEU B 285 -1 N LEU B 285 O ALA B 298 SHEET 4 AA5 7 LEU B 254 ASP B 258 1 N ALA B 257 O ILE B 282 SHEET 5 AA5 7 ILE B 219 GLY B 224 1 N PHE B 222 O ILE B 256 SHEET 6 AA5 7 LYS B 143 ARG B 147 1 N LYS B 143 O ALA B 220 SHEET 7 AA5 7 PHE B 178 VAL B 181 1 O LEU B 179 N PHE B 144 SHEET 1 AA6 4 VAL B 371 CYS B 377 0 SHEET 2 AA6 4 ILE B 380 LEU B 385 -1 O GLU B 384 N GLU B 373 SHEET 3 AA6 4 ALA B 422 PHE B 425 -1 O PHE B 425 N ALA B 381 SHEET 4 AA6 4 ALA B 418 MET B 419 -1 N MET B 419 O ALA B 422 LINK NZ LYS A 287 C4A PLP A1001 1555 1555 1.32 LINK NZ LYS B 287 C4A PLP B1001 1555 1555 1.31 CISPEP 1 LEU A 173 PRO A 174 0 0.93 CISPEP 2 LEU B 173 PRO B 174 0 -0.40 SITE 1 AC1 16 SER A 117 GLY A 118 SER A 119 TYR A 151 SITE 2 AC1 16 HIS A 152 GLU A 225 ASP A 258 VAL A 260 SITE 3 AC1 16 ILE A 261 LYS A 287 HOH A1147 HOH A1185 SITE 4 AC1 16 HOH A1208 HOH A1263 PHE B 323 THR B 324 SITE 1 AC2 7 TRP A 58 TYR A 151 ALA A 230 ARG A 417 SITE 2 AC2 7 HOH A1132 HOH A1238 HOH A1239 SITE 1 AC3 7 THR A 21 ASN A 22 ARG A 403 HIS B 88 SITE 2 AC3 7 GLY B 317 ASP B 367 HOH B1103 SITE 1 AC4 6 GLN B 38 TYR B 41 TYR B 43 HOH B1132 SITE 2 AC4 6 HOH B1236 HOH B1238 SITE 1 AC5 6 PHE A 86 TRP B 58 ALA B 230 ARG B 417 SITE 2 AC5 6 HOH B1192 HOH B1202 SITE 1 AC6 6 VAL B 148 GLY B 163 GLN B 168 PRO B 174 SITE 2 AC6 6 HIS B 180 HOH B1187 SITE 1 AC7 23 PHE A 323 THR A 324 LEU B 57 SER B 59 SITE 2 AC7 23 SER B 117 GLY B 118 SER B 119 TYR B 151 SITE 3 AC7 23 HIS B 152 GLU B 225 ASP B 258 VAL B 260 SITE 4 AC7 23 ILE B 261 SER B 286 GLN B 288 LEU B 289 SITE 5 AC7 23 SER B 290 SER B 291 SER B 292 HOH B1139 SITE 6 AC7 23 HOH B1178 HOH B1199 HOH B1269 CRYST1 98.070 98.070 119.310 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008382 0.00000