HEADER DNA BINDING PROTEIN 31-OCT-19 6TB5 TITLE THE CRYSTAL STRUCTURE OF THE DPS2 FROM DEINOCOCCUS RADIODURANS TO TITLE 2 1.83A RESOLUTION (SEQUENTIALLY SOAKED IN CACL2 [5MM] FOR 20 MIN, THEN TITLE 3 IN AMMONIUM IRON(II) SULFATE [10MM] FOR 2H). COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PROTECTION DURING STARVATION PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 EC: 1.16.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DPS2, DPS-2, DR_B0092; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS IRON BIOMINERALISATION, IRON STORAGE, IRON DETOXIFICATION, DNA KEYWDS 2 BINDING, CALCIUM BINDING., DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,S.MCSWEENEY,C.V.ROMAO,E.P.MITCHELL REVDAT 2 24-JAN-24 6TB5 1 REMARK REVDAT 1 18-NOV-20 6TB5 0 JRNL AUTH M.G.CUYPERS,S.MCSWEENEY,C.V.ROMAO,E.P.MITCHELL JRNL TITL THE CRYSTAL STRUCTURE OF THE DPS2 FROM DEINOCOCCUS JRNL TITL 2 RADIODURANS TO 1.83A RESOLUTION (SEQUENTIALLY SOAKED IN JRNL TITL 3 CACL2 [5MM] FOR 20 MIN, THEN IN AMMONIUM IRON(II) SULFATE JRNL TITL 4 [10MM] FOR 2H). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0900 - 3.6600 0.99 2558 140 0.1565 0.1949 REMARK 3 2 3.6600 - 2.9100 1.00 2482 149 0.1641 0.1906 REMARK 3 3 2.9000 - 2.5400 1.00 2485 122 0.1783 0.2284 REMARK 3 4 2.5400 - 2.3100 1.00 2468 135 0.1812 0.2337 REMARK 3 5 2.3100 - 2.1400 1.00 2466 128 0.1861 0.2276 REMARK 3 6 2.1400 - 2.0100 1.00 2412 150 0.1915 0.2278 REMARK 3 7 2.0100 - 1.9100 1.00 2473 125 0.2142 0.2720 REMARK 3 8 1.9100 - 1.8300 1.00 2466 109 0.2504 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20877 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 29.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2C6R REMARK 200 REMARK 200 REMARK: CUBES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M KCL, 0.01M MGCL2, 0.05M HEPES PH REMARK 280 7.0, 5% V/V PEG400 (NATRIX #35), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -88.83000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT1 4 0.000000 0.000000 -1.000000 -88.83000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 0.000000 -1.000000 -88.83000 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 -88.83000 REMARK 350 BIOMT3 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 0.000000 -1.000000 -88.83000 REMARK 350 BIOMT2 9 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT3 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 -88.83000 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 -88.83000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 -88.83000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 FE FE A 304 LIES ON A SPECIAL POSITION. REMARK 375 FE FE A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ASN A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 465 ASN A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 PRO A 28 REMARK 465 LEU A 29 REMARK 465 PRO A 30 REMARK 465 TYR A 31 REMARK 465 ASN A 32 REMARK 465 ARG A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 THR A 36 REMARK 465 LEU A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 207 REMARK 465 LEU A 208 REMARK 465 ARG A 209 REMARK 465 GLY A 210 REMARK 465 ARG A 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 153 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 120 63.52 -109.96 REMARK 500 SER A 121 -74.58 -75.40 REMARK 500 ASP A 162 72.46 -150.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 569 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 571 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 7.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 ASP A 97 OD1 84.9 REMARK 620 3 ASP A 97 OD2 84.1 5.7 REMARK 620 4 GLU A 101 OE2 87.1 2.6 5.4 REMARK 620 5 HOH A 476 O 85.7 31.4 25.7 30.2 REMARK 620 6 HOH A 507 O 99.0 124.5 119.0 123.0 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD1 REMARK 620 2 ASP A 132 OD2 52.4 REMARK 620 3 ASP A 133 OD1 78.3 72.3 REMARK 620 4 ASP A 193 OD2 153.5 106.9 79.3 REMARK 620 5 ILE A 200 O 133.6 81.2 85.5 30.0 REMARK 620 6 HOH A 445 O 147.2 109.1 69.7 11.8 39.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 167 OD1 REMARK 620 2 ASN A 167 OD1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 170 OE1 REMARK 620 2 HOH A 508 O 99.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 171 OE1 REMARK 620 2 GLU A 171 OE1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 187 O REMARK 620 2 ASN A 189 OD1 90.8 REMARK 620 3 PRO A 194 O 100.7 75.4 REMARK 620 4 ASN A 195 O 81.3 141.5 69.3 REMARK 620 5 HOH A 460 O 80.9 69.4 144.8 144.2 REMARK 620 6 HOH A 532 O 169.8 94.5 89.0 99.8 92.8 REMARK 620 7 HOH A 540 O 94.2 122.8 156.5 95.4 55.4 75.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C2J RELATED DB: PDB REMARK 900 NATIVE DRDPS2 REMARK 900 RELATED ID: 2C6R RELATED DB: PDB REMARK 900 FE SOAK DR DPS2 DBREF 6TB5 A 1 211 UNP Q9RZN1 DPS2_DEIRA 31 241 SEQRES 1 A 211 ASN GLY VAL PRO SER THR ASN VAL ASN THR PRO ALA PRO SEQRES 2 A 211 ASN THR GLY GLN SER THR ALA GLN ASN THR ASN THR ALA SEQRES 3 A 211 SER PRO LEU PRO TYR ASN ARG ALA THR THR LEU PRO ALA SEQRES 4 A 211 ALA GLY THR GLU ASP LEU LYS LYS SER VAL GLN ALA LEU SEQRES 5 A 211 GLN ASN THR LEU THR GLU LEU GLN ALA LEU GLN LEU GLN SEQRES 6 A 211 THR LYS GLN ALA HIS TRP ASN VAL SER GLY THR LEU TRP SEQRES 7 A 211 TYR THR LEU HIS GLU LEU LEU GLN ASP HIS TYR GLU GLY SEQRES 8 A 211 ILE SER LYS PHE ALA ASP ASP VAL ALA GLU ARG GLN LEU SEQRES 9 A 211 SER VAL GLY ALA SER SER ASP GLY ARG ALA ILE THR ILE SEQRES 10 A 211 VAL ALA ALA SER ARG LEU PRO GLU ILE PRO GLY GLY PHE SEQRES 11 A 211 LEU ASP ASP ALA GLN VAL ILE GLN PHE PHE THR TYR GLN SEQRES 12 A 211 TYR GLU THR VAL GLY GLN ARG ILE HIS GLN ARG VAL GLY SEQRES 13 A 211 ASP VAL GLU LYS VAL ASP PRO THR THR ALA ASN LEU LEU SEQRES 14 A 211 GLN GLU VAL GLU HIS ILE ILE GLU LYS TYR GLN TRP GLN SEQRES 15 A 211 MET ARG ALA PHE LEU GLN ASN THR PRO THR ASP PRO ASN SEQRES 16 A 211 THR GLY PHE ASP ILE ASN ASN GLY LYS PRO VAL PRO LEU SEQRES 17 A 211 ARG GLY ARG HET CA A 301 1 HET CA A 302 1 HET FE A 303 1 HET FE A 304 1 HET FE A 305 1 HET FE A 306 1 HETNAM CA CALCIUM ION HETNAM FE FE (III) ION FORMUL 2 CA 2(CA 2+) FORMUL 4 FE 4(FE 3+) FORMUL 8 HOH *172(H2 O) HELIX 1 AA1 THR A 42 ASN A 72 1 31 HELIX 2 AA2 LEU A 77 VAL A 106 1 30 HELIX 3 AA3 ARG A 113 ALA A 120 1 8 HELIX 4 AA4 ASP A 133 GLU A 159 1 27 HELIX 5 AA5 ASP A 162 ALA A 185 1 24 HELIX 6 AA6 PHE A 186 GLN A 188 5 3 HELIX 7 AA7 GLY A 197 ASN A 201 5 5 SHEET 1 AA1 2 VAL A 73 SER A 74 0 SHEET 2 AA1 2 LEU A 131 ASP A 132 1 O LEU A 131 N SER A 74 LINK NE2 HIS A 70 FE FE A 303 1555 1555 2.20 LINK OD1AASP A 97 FE FE A 303 1555 3454 2.49 LINK OD2AASP A 97 FE FE A 303 1555 3454 2.34 LINK OE2 GLU A 101 FE FE A 303 1555 3454 2.15 LINK OD1 ASP A 132 CA CA A 301 1555 8454 2.29 LINK OD2 ASP A 132 CA CA A 301 1555 8454 2.61 LINK OD1 ASP A 133 CA CA A 301 1555 8454 2.44 LINK OD1 ASN A 167 FE FE A 305 1555 1555 2.74 LINK OD1 ASN A 167 FE FE A 305 1555 5555 2.74 LINK OE1 GLN A 170 FE FE A 306 1555 9555 2.35 LINK OE1 GLU A 171 FE FE A 304 1555 1555 2.77 LINK OE1 GLU A 171 FE FE A 304 1555 5555 2.77 LINK O LEU A 187 CA CA A 302 1555 1555 2.52 LINK OD1 ASN A 189 CA CA A 302 1555 1555 2.55 LINK OD2 ASP A 193 CA CA A 301 1555 1555 2.33 LINK O PRO A 194 CA CA A 302 1555 1555 2.56 LINK O ASN A 195 CA CA A 302 1555 1555 2.87 LINK O ILE A 200 CA CA A 301 1555 8454 2.34 LINK CA CA A 301 O HOH A 445 1555 11544 2.43 LINK CA CA A 302 O HOH A 460 1555 1555 2.44 LINK CA CA A 302 O HOH A 532 1555 1555 2.65 LINK CA CA A 302 O HOH A 540 1555 1555 2.81 LINK FE FE A 303 O HOH A 476 1555 1555 2.22 LINK FE FE A 303 O HOH A 507 1555 3454 2.25 LINK FE FE A 306 O HOH A 508 1555 1555 2.08 SITE 1 AC1 6 ASP A 132 ASP A 133 ASP A 193 ASN A 195 SITE 2 AC1 6 ILE A 200 HOH A 445 SITE 1 AC2 7 LEU A 187 ASN A 189 PRO A 194 ASN A 195 SITE 2 AC2 7 HOH A 460 HOH A 532 HOH A 540 SITE 1 AC3 5 HIS A 70 ASP A 97 GLU A 101 HOH A 476 SITE 2 AC3 5 HOH A 507 SITE 1 AC4 2 GLU A 171 FE A 305 SITE 1 AC5 2 ASN A 167 FE A 304 SITE 1 AC6 3 ASN A 167 GLN A 170 HOH A 508 CRYST1 88.830 88.830 88.830 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011257 0.00000