HEADER HYDROLASE 04-NOV-19 6TC1 TITLE 3C-LIKE PROTEASE FROM SOUTHAMPTON VIRUS COMPLEXED WITH FMOPL000283A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.15,3.4.22.66,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENOME POLYPROTEIN; COMPND 8 CHAIN: B; COMPND 9 EC: 3.6.1.15,3.4.22.66,2.7.7.48; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOUTHAMPTON VIRUS (SEROTYPE 3); SOURCE 3 ORGANISM_TAXID: 37129; SOURCE 4 GENE: ORF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SOUTHAMPTON VIRUS (SEROTYPE 3); SOURCE 9 ORGANISM_TAXID: 37129; SOURCE 10 GENE: ORF1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS VIRAL PROTEASE., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,J.B.COOPER REVDAT 2 24-JAN-24 6TC1 1 REMARK REVDAT 1 19-AUG-20 6TC1 0 JRNL AUTH J.GUO,A.DOUANGAMATH,W.SONG,A.R.COKER,A.W.E.CHAN,S.P.WOOD, JRNL AUTH 2 J.B.COOPER,E.RESNICK,N.LONDON,F.V.DELFT JRNL TITL IN CRYSTALLO-SCREENING FOR DISCOVERY OF HUMAN NOROVIRUS JRNL TITL 2 3C-LIKE PROTEASE INHIBITORS. JRNL REF J STRUCT BIOL X V. 4 00031 2020 JRNL REFN ESSN 2590-1524 JRNL PMID 32743543 JRNL DOI 10.1016/J.YJSBX.2020.100031 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 36305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2685 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2572 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3647 ; 1.811 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5937 ; 1.337 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 8.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;31.039 ;19.646 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;14.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.501 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5249 ; 4.004 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS ANISOTROPIC U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38160 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 24.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6T1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 4 MG/ML. 0.2 M REMARK 280 AMMONIUM CITRATE AND 12% (V/V) PEG3350., PH 5.1, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.51000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.51000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 399 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 335 O HOH B 438 2.09 REMARK 500 O HOH A 354 O HOH A 362 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 45 -49.04 -29.23 REMARK 500 ASP A 90 93.39 -55.73 REMARK 500 SER A 91 72.64 103.98 REMARK 500 GLN A 110 -112.54 37.60 REMARK 500 ALA A 148 -110.59 49.94 REMARK 500 ALA B 125 -118.25 -34.13 REMARK 500 ALA B 127 10.79 49.85 REMARK 500 LYS B 128 -121.48 11.20 REMARK 500 ALA B 148 -117.09 46.88 REMARK 500 ASN B 165 -68.99 89.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 465 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 466 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 469 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A 470 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 471 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A 473 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 8.67 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 453 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 454 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 456 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 457 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH B 460 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 9.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MZW B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPH RELATED DB: PDB REMARK 900 COMPLEX WITH POLYPEPTIDE INHIBITOR. REMARK 900 RELATED ID: 6T1Q RELATED DB: PDB REMARK 900 NATIVE STRUCTURE. DBREF 6TC1 A 1 172 UNP Q04544 POLG_SOUV3 1100 1271 DBREF 6TC1 B 2 173 UNP Q04544 POLG_SOUV3 1101 1272 SEQRES 1 A 172 ALA PRO PRO THR LEU TRP SER ARG VAL THR LYS PHE GLY SEQRES 2 A 172 SER GLY TRP GLY PHE TRP VAL SER PRO THR VAL PHE ILE SEQRES 3 A 172 THR THR THR HIS VAL ILE PRO THR SER ALA LYS GLU PHE SEQRES 4 A 172 PHE GLY GLU PRO LEU THR SER ILE ALA ILE HIS ARG ALA SEQRES 5 A 172 GLY GLU PHE THR LEU PHE ARG PHE SER LYS LYS ILE ARG SEQRES 6 A 172 PRO ASP LEU THR GLY MET ILE LEU GLU GLU GLY CYS PRO SEQRES 7 A 172 GLU GLY THR VAL CYS SER VAL LEU ILE LYS ARG ASP SER SEQRES 8 A 172 GLY GLU LEU LEU PRO LEU ALA VAL ARG MET GLY ALA ILE SEQRES 9 A 172 ALA SER MET ARG ILE GLN GLY ARG LEU VAL HIS GLY GLN SEQRES 10 A 172 SER GLY MET LEU LEU THR GLY ALA ASN ALA LYS GLY MET SEQRES 11 A 172 ASP LEU GLY THR ILE PRO GLY ASP CYS GLY ALA PRO TYR SEQRES 12 A 172 VAL TYR LYS ARG ALA ASN ASP TRP VAL VAL CYS GLY VAL SEQRES 13 A 172 HIS ALA ALA ALA THR LYS SER GLY ASN THR VAL VAL CYS SEQRES 14 A 172 ALA VAL GLN SEQRES 1 B 172 PRO PRO THR LEU TRP SER ARG VAL THR LYS PHE GLY SER SEQRES 2 B 172 GLY TRP GLY PHE TRP VAL SER PRO THR VAL PHE ILE THR SEQRES 3 B 172 THR THR HIS VAL ILE PRO THR SER ALA LYS GLU PHE PHE SEQRES 4 B 172 GLY GLU PRO LEU THR SER ILE ALA ILE HIS ARG ALA GLY SEQRES 5 B 172 GLU PHE THR LEU PHE ARG PHE SER LYS LYS ILE ARG PRO SEQRES 6 B 172 ASP LEU THR GLY MET ILE LEU GLU GLU GLY CYS PRO GLU SEQRES 7 B 172 GLY THR VAL CYS SER VAL LEU ILE LYS ARG ASP SER GLY SEQRES 8 B 172 GLU LEU LEU PRO LEU ALA VAL ARG MET GLY ALA ILE ALA SEQRES 9 B 172 SER MET ARG ILE GLN GLY ARG LEU VAL HIS GLY GLN SER SEQRES 10 B 172 GLY MET LEU LEU THR GLY ALA ASN ALA LYS GLY MET ASP SEQRES 11 B 172 LEU GLY THR ILE PRO GLY ASP CYS GLY ALA PRO TYR VAL SEQRES 12 B 172 TYR LYS ARG ALA ASN ASP TRP VAL VAL CYS GLY VAL HIS SEQRES 13 B 172 ALA ALA ALA THR LYS SER GLY ASN THR VAL VAL CYS ALA SEQRES 14 B 172 VAL GLN ALA HET DMS A 201 4 HET DMS A 202 4 HET MZW B 201 8 HETNAM DMS DIMETHYL SULFOXIDE HETNAM MZW 5-ETHYL-1,3,4-THIADIAZOL-2-AMINE FORMUL 3 DMS 2(C2 H6 O S) FORMUL 5 MZW C4 H7 N3 S FORMUL 6 HOH *337(H2 O) HELIX 1 AA1 PRO A 2 ARG A 8 1 7 HELIX 2 AA2 HIS A 30 ILE A 32 5 3 HELIX 3 AA3 ILE A 135 CYS A 139 5 5 HELIX 4 AA4 THR B 4 SER B 7 5 4 HELIX 5 AA5 HIS B 30 ILE B 32 5 3 HELIX 6 AA6 ILE B 135 CYS B 139 5 5 SHEET 1 AA1 5 VAL A 9 PHE A 12 0 SHEET 2 AA1 5 GLY A 15 TRP A 19 -1 O GLY A 17 N THR A 10 SHEET 3 AA1 5 VAL A 24 THR A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 AA1 5 PHE A 55 PHE A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 AA1 5 ILE A 47 ALA A 52 -1 N ALA A 52 O PHE A 55 SHEET 1 AA2 2 GLU A 38 PHE A 39 0 SHEET 2 AA2 2 GLU A 42 PRO A 43 -1 O GLU A 42 N PHE A 39 SHEET 1 AA3 8 ILE A 72 LEU A 73 0 SHEET 2 AA3 8 ASP A 150 ALA A 160 1 O VAL A 153 N ILE A 72 SHEET 3 AA3 8 THR A 166 ALA A 170 -1 O ALA A 170 N VAL A 156 SHEET 4 AA3 8 ARG A 112 LEU A 121 -1 N GLN A 117 O CYS A 169 SHEET 5 AA3 8 GLU A 93 ILE A 109 -1 N GLY A 102 O SER A 118 SHEET 6 AA3 8 VAL A 82 ARG A 89 -1 N ILE A 87 O LEU A 95 SHEET 7 AA3 8 PRO A 142 ARG A 147 -1 O VAL A 144 N SER A 84 SHEET 8 AA3 8 ASP A 150 ALA A 160 -1 O VAL A 152 N TYR A 145 SHEET 1 AA4 5 VAL B 9 PHE B 12 0 SHEET 2 AA4 5 GLY B 15 TRP B 19 -1 O GLY B 15 N PHE B 12 SHEET 3 AA4 5 VAL B 24 THR B 28 -1 O ILE B 26 N PHE B 18 SHEET 4 AA4 5 PHE B 55 PHE B 60 -1 O PHE B 58 N PHE B 25 SHEET 5 AA4 5 ILE B 47 ALA B 52 -1 N HIS B 50 O LEU B 57 SHEET 1 AA5 2 GLU B 38 PHE B 39 0 SHEET 2 AA5 2 GLU B 42 PRO B 43 -1 O GLU B 42 N PHE B 39 SHEET 1 AA6 8 ILE B 72 LEU B 73 0 SHEET 2 AA6 8 ASP B 150 ALA B 160 1 O VAL B 153 N ILE B 72 SHEET 3 AA6 8 THR B 166 ALA B 170 -1 O ALA B 170 N VAL B 156 SHEET 4 AA6 8 ARG B 112 LEU B 121 -1 N GLN B 117 O CYS B 169 SHEET 5 AA6 8 LEU B 94 ILE B 109 -1 N ILE B 109 O ARG B 112 SHEET 6 AA6 8 VAL B 82 LYS B 88 -1 N ILE B 87 O LEU B 95 SHEET 7 AA6 8 PRO B 142 ARG B 147 -1 O VAL B 144 N SER B 84 SHEET 8 AA6 8 ASP B 150 ALA B 160 -1 O ASP B 150 N ARG B 147 SITE 1 AC1 3 CYS A 77 GLN A 117 HOH A 368 SITE 1 AC2 5 ARG A 89 GLU A 93 MET A 130 HOH A 437 SITE 2 AC2 5 TRP B 6 SITE 1 AC3 2 ARG B 100 HOH B 444 CRYST1 63.020 89.720 61.530 90.00 96.67 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015868 0.000000 0.001856 0.00000 SCALE2 0.000000 0.011146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016363 0.00000