HEADER HYDROLASE 06-NOV-19 6TCV TITLE CRYSTAL STRUCTURE OF BACTEROIDES THETAIOTAMICRON ENDOBT-3987 IN TITLE 2 COMPLEX WITH MAN9GLCNAC2ASN SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F1; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_3987; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-B-N-ACETYLGLUCOSAMINIDASE, ENDOBT, GLYCOSIDE HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.TRASTOY,J.J.DU,E.H.KLONTZ,J.O.CIFUENTE,E.J.SUNDBERG,M.E.GUERIN REVDAT 3 24-JAN-24 6TCV 1 HETSYN LINK REVDAT 2 29-JUL-20 6TCV 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 26-FEB-20 6TCV 0 JRNL AUTH B.TRASTOY,J.J.DU,E.H.KLONTZ,C.LI,J.O.CIFUENTE,L.X.WANG, JRNL AUTH 2 E.J.SUNDBERG,M.E.GUERIN JRNL TITL STRUCTURAL BASIS OF MAMMALIAN HIGH-MANNOSE N-GLYCAN JRNL TITL 2 PROCESSING BY HUMAN GUT BACTEROIDES. JRNL REF NAT COMMUN V. 11 899 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32060313 JRNL DOI 10.1038/S41467-020-14754-7 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 115143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 5621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8650 - 4.0689 1.00 3663 192 0.1881 0.2108 REMARK 3 2 4.0689 - 3.2308 0.99 3683 190 0.1648 0.1787 REMARK 3 3 3.2308 - 2.8228 0.99 3725 136 0.1618 0.1645 REMARK 3 4 2.8228 - 2.5648 1.00 3658 196 0.1557 0.1894 REMARK 3 5 2.5648 - 2.3811 1.00 3671 204 0.1521 0.1717 REMARK 3 6 2.3811 - 2.2408 1.00 3717 164 0.1458 0.1665 REMARK 3 7 2.2408 - 2.1286 1.00 3659 205 0.1454 0.1869 REMARK 3 8 2.1286 - 2.0359 1.00 3712 175 0.1431 0.1431 REMARK 3 9 2.0359 - 1.9576 1.00 3683 164 0.1385 0.1631 REMARK 3 10 1.9576 - 1.8900 1.00 3666 220 0.1420 0.1716 REMARK 3 11 1.8900 - 1.8309 1.00 3686 186 0.1365 0.1529 REMARK 3 12 1.8309 - 1.7786 1.00 3700 180 0.1422 0.1685 REMARK 3 13 1.7786 - 1.7318 1.00 3727 183 0.1410 0.1476 REMARK 3 14 1.7318 - 1.6895 1.00 3688 180 0.1369 0.1499 REMARK 3 15 1.6895 - 1.6511 1.00 3668 200 0.1341 0.1537 REMARK 3 16 1.6511 - 1.6160 1.00 3680 203 0.1431 0.1745 REMARK 3 17 1.6160 - 1.5837 1.00 3654 200 0.1425 0.1553 REMARK 3 18 1.5837 - 1.5538 1.00 3669 201 0.1423 0.1484 REMARK 3 19 1.5538 - 1.5261 1.00 3680 198 0.1430 0.1575 REMARK 3 20 1.5261 - 1.5002 1.00 3687 185 0.1478 0.1535 REMARK 3 21 1.5002 - 1.4760 1.00 3718 194 0.1598 0.1725 REMARK 3 22 1.4760 - 1.4533 1.00 3618 206 0.1493 0.1493 REMARK 3 23 1.4533 - 1.4319 1.00 3691 215 0.1710 0.1851 REMARK 3 24 1.4319 - 1.4117 1.00 3703 186 0.1810 0.1947 REMARK 3 25 1.4117 - 1.3927 1.00 3662 200 0.1857 0.1871 REMARK 3 26 1.3927 - 1.3746 1.00 3697 199 0.1891 0.2006 REMARK 3 27 1.3746 - 1.3574 1.00 3720 177 0.2029 0.2129 REMARK 3 28 1.3574 - 1.3410 1.00 3714 161 0.2163 0.2163 REMARK 3 29 1.3410 - 1.3254 1.00 3609 194 0.2264 0.2510 REMARK 3 30 1.3254 - 1.3110 0.72 2714 127 0.2582 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4667 7.6521 1.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.2439 REMARK 3 T33: 0.3202 T12: 0.0254 REMARK 3 T13: 0.0657 T23: 0.0860 REMARK 3 L TENSOR REMARK 3 L11: 2.9856 L22: 0.0736 REMARK 3 L33: 2.0969 L12: 0.1780 REMARK 3 L13: -0.4560 L23: -0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.4020 S13: -0.3867 REMARK 3 S21: 0.2398 S22: 0.2049 S23: 0.3059 REMARK 3 S31: -0.2569 S32: -0.2201 S33: -0.1989 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2146 9.2919 -1.2179 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.2213 REMARK 3 T33: 0.2726 T12: -0.0119 REMARK 3 T13: 0.0115 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 5.6856 L22: 1.1702 REMARK 3 L33: 4.6368 L12: -0.6657 REMARK 3 L13: -3.2764 L23: 1.1092 REMARK 3 S TENSOR REMARK 3 S11: -0.2055 S12: -0.0912 S13: -0.6521 REMARK 3 S21: 0.2650 S22: 0.1664 S23: 0.6272 REMARK 3 S31: -0.0446 S32: -0.3175 S33: 0.1287 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5290 8.0037 1.2614 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.2135 REMARK 3 T33: 0.2153 T12: 0.0249 REMARK 3 T13: 0.0511 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.4915 L22: 1.1342 REMARK 3 L33: 1.0851 L12: -0.3647 REMARK 3 L13: 0.6126 L23: -0.2939 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.2040 S13: -0.1647 REMARK 3 S21: 0.1115 S22: 0.0734 S23: 0.3401 REMARK 3 S31: -0.1390 S32: -0.2082 S33: -0.0671 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6004 16.9520 -16.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.1067 REMARK 3 T33: 0.1339 T12: -0.0113 REMARK 3 T13: -0.0067 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5675 L22: 0.5385 REMARK 3 L33: 0.7593 L12: -0.1128 REMARK 3 L13: 0.1800 L23: -0.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0093 S13: 0.0019 REMARK 3 S21: -0.0426 S22: -0.0039 S23: 0.0688 REMARK 3 S31: -0.0663 S32: -0.0162 S33: 0.0136 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 392 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2197 23.2265 -4.7273 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.1422 REMARK 3 T33: 0.1582 T12: -0.0313 REMARK 3 T13: -0.0224 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.6929 L22: 1.4759 REMARK 3 L33: 0.7698 L12: -0.6621 REMARK 3 L13: 0.9567 L23: 0.5092 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: -0.2574 S13: 0.1635 REMARK 3 S21: 0.0914 S22: 0.0343 S23: -0.1208 REMARK 3 S31: -0.2093 S32: 0.1723 S33: -0.0272 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 412 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7289 12.5346 -4.2708 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.1262 REMARK 3 T33: 0.1147 T12: -0.0243 REMARK 3 T13: -0.0089 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.4779 L22: 1.5527 REMARK 3 L33: 1.8216 L12: -0.8039 REMARK 3 L13: -0.0234 L23: 0.2984 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: -0.1017 S13: 0.0649 REMARK 3 S21: 0.0672 S22: 0.0456 S23: -0.0966 REMARK 3 S31: 0.0142 S32: 0.1822 S33: -0.0163 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2965 34.3425 -19.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.5461 T22: 0.2924 REMARK 3 T33: 0.6428 T12: -0.1720 REMARK 3 T13: 0.1732 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 7.6131 L22: 3.2579 REMARK 3 L33: 7.4414 L12: 3.0501 REMARK 3 L13: 7.3369 L23: 2.0706 REMARK 3 S TENSOR REMARK 3 S11: -0.5625 S12: 0.1553 S13: 2.5326 REMARK 3 S21: -0.6271 S22: -0.1280 S23: -0.7398 REMARK 3 S31: -2.0533 S32: 1.5234 S33: 0.7267 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 29.865 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 29.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XDS REMARK 200 STARTING MODEL: 3POH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 00 MM M MES PH 6, 50 MM CACL2 AND 10% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.74750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.34053 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.47400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 57.74750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.34053 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.47400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 57.74750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.34053 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.47400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.68107 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.94800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.68107 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.94800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.68107 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 26 REMARK 465 ASP B 27 REMARK 465 ASP B 28 REMARK 465 LEU B 29 REMARK 465 GLU B 30 REMARK 465 VAL B 31 REMARK 465 GLY B 32 REMARK 465 LYS B 33 REMARK 465 ASN B 34 REMARK 465 ILE B 35 REMARK 465 ASP B 36 REMARK 465 GLU B 37 REMARK 465 SER B 38 REMARK 465 ALA B 39 REMARK 465 TYR B 40 REMARK 465 SER B 41 REMARK 465 GLY B 42 REMARK 465 ILE B 43 REMARK 465 TYR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 ASN B 47 REMARK 465 ALA B 48 REMARK 465 GLY B 76 REMARK 465 LEU B 77 REMARK 465 SER B 78 REMARK 465 LYS B 79 REMARK 465 THR B 80 REMARK 465 PRO B 81 REMARK 465 ASN B 82 REMARK 465 THR B 83 REMARK 465 ALA B 84 REMARK 465 THR B 85 REMARK 465 SER B 86 REMARK 465 ASN B 119 REMARK 465 GLU B 120 REMARK 465 GLY B 121 REMARK 465 VAL B 125 REMARK 465 ASN B 126 REMARK 465 ALA B 127 REMARK 465 ASN B 128 REMARK 465 THR B 129 REMARK 465 LYS B 130 REMARK 465 SER B 131 REMARK 465 SER B 157 REMARK 465 ASP B 158 REMARK 465 GLN B 159 REMARK 465 SER B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 ILE B 163 REMARK 465 THR B 164 REMARK 465 ILE B 165 REMARK 465 LYS B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ASN B 56 CG OD1 ND2 REMARK 470 THR B 71 OG1 CG2 REMARK 470 THR B 72 OG1 CG2 REMARK 470 VAL B 73 CG1 CG2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 MET B 75 CG SD CE REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 VAL B 89 CG1 CG2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ILE B 91 CG1 CG2 CD1 REMARK 470 ASP B 92 CG OD1 OD2 REMARK 470 TYR B 95 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ASP B 106 CG OD1 OD2 REMARK 470 GLN B 112 CG CD OE1 NE2 REMARK 470 ILE B 122 CG1 CG2 CD1 REMARK 470 LEU B 123 CG CD1 CD2 REMARK 470 THR B 124 OG1 CG2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 VAL B 134 CG1 CG2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 GLN B 145 CG CD OE1 NE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ILE B 156 CG1 CG2 CD1 REMARK 470 ASP B 167 CG OD1 OD2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 180 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 276 48.46 -159.67 REMARK 500 GLN B 284 30.31 -141.89 REMARK 500 TYR B 315 2.92 84.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN B 182 11.01 REMARK 500 GLY B 191 11.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 6TCV B 27 476 UNP Q8A0N4 Q8A0N4_BACTN 27 476 SEQADV 6TCV GLY B 26 UNP Q8A0N4 EXPRESSION TAG SEQADV 6TCV ALA B 312 UNP Q8A0N4 ASP 312 ENGINEERED MUTATION SEQADV 6TCV LEU B 314 UNP Q8A0N4 GLU 314 ENGINEERED MUTATION SEQRES 1 B 451 GLY ASP ASP LEU GLU VAL GLY LYS ASN ILE ASP GLU SER SEQRES 2 B 451 ALA TYR SER GLY ILE TYR GLU ASN ASN ALA TYR LEU ARG SEQRES 3 B 451 ASP GLY LYS SER ASN LEU VAL SER LYS VAL VAL GLU LEU SEQRES 4 B 451 HIS GLY GLU THR TYR ALA THR THR VAL LYS MET GLY LEU SEQRES 5 B 451 SER LYS THR PRO ASN THR ALA THR SER ALA LYS VAL LYS SEQRES 6 B 451 ILE ASP ALA ALA TYR LEU GLU THR TYR ASN LYS ALA HIS SEQRES 7 B 451 ASN THR ASP PHE ALA LEU TYR PRO GLN ASP LEU VAL THR SEQRES 8 B 451 PHE ALA ASN GLU GLY ILE LEU THR VAL ASN ALA ASN THR SEQRES 9 B 451 LYS SER ALA GLU VAL GLU MET THR ILE ARG ALA GLY GLU SEQRES 10 B 451 GLY LEU GLN GLU ASP LYS THR TYR ALA ILE PRO VAL ALA SEQRES 11 B 451 ILE SER ASP GLN SER SER ASP ILE THR ILE LYS ASP GLU SEQRES 12 B 451 ASP ALA LYS HIS CYS ILE TYR LEU VAL LYS ASP MET ARG SEQRES 13 B 451 ASN ALA GLY ASP ALA TYR LYS GLY GLU GLY VAL MET GLN SEQRES 14 B 451 GLY TYR LEU PHE PHE GLU VAL ASN ASP VAL ASN PRO LEU SEQRES 15 B 451 ASN THR LEU SER PHE GLN LEU GLU ASN GLY LYS LEU LEU SEQRES 16 B 451 TRP ASP VAL VAL VAL LEU PHE ALA ALA ASN ILE ASN TYR SEQRES 17 B 451 ASP ALA GLU ALA GLY ARG PRO ARG VAL GLN CYS ASN PRO SEQRES 18 B 451 ASN VAL GLN TYR LEU LEU ASP ASN ASN GLU THR LEU LEU SEQRES 19 B 451 GLN PRO LEU ARG ARG ARG GLY VAL LYS VAL LEU LEU GLY SEQRES 20 B 451 LEU LEU GLY ASN HIS ASP ILE THR GLY LEU ALA GLN LEU SEQRES 21 B 451 SER GLU GLN GLY ALA LYS ASP PHE ALA ARG GLU VAL ALA SEQRES 22 B 451 GLN TYR CYS LYS ALA TYR ASN LEU ASP GLY VAL ASN TYR SEQRES 23 B 451 ALA ASP LEU TYR SER ASN SER PRO ASP LEU SER ASN PRO SEQRES 24 B 451 SER LEU THR ASN PRO SER THR ALA ALA ALA ALA ARG LEU SEQRES 25 B 451 CYS TYR GLU THR LYS GLN ALA MET PRO ASP LYS LEU VAL SEQRES 26 B 451 THR VAL PHE ASP TRP GLY GLN MET TYR GLY VAL ALA THR SEQRES 27 B 451 VAL ASP GLY VAL ASP ALA LYS GLU TRP ILE ASP ILE VAL SEQRES 28 B 451 VAL ALA ASN TYR GLY SER ALA ALA TYR PRO ILE GLY GLN SEQRES 29 B 451 MET THR LYS LYS GLN CYS SER GLY ILE SER MET GLU PHE SEQRES 30 B 451 ASN LEU GLY GLY GLY GLY SER LEU SER ALA SER LYS ALA SEQRES 31 B 451 GLN SER MET ILE ASP GLY GLY TYR GLY TRP PHE MET GLY SEQRES 32 B 451 PHE ALA PRO SER PRO ALA LYS TYR GLY SER VAL PHE SER SEQRES 33 B 451 ARG LEU GLN GLY GLY GLY GLU VAL LEU TYR GLY SER ASN SEQRES 34 B 451 VAL ALA ALA PRO THR ILE PHE TYR LYS LYS ASN ASP PRO SEQRES 35 B 451 THR PRO TYR LYS TYR PRO ASP ASP LEU HET NAG A 1 27 HET NAG A 2 27 HET BMA A 3 20 HET MAN A 4 21 HET MAN A 5 21 HET MAN A 6 22 HET MAN A 7 20 HET MAN A 8 21 HET MAN A 9 22 HET MAN A 10 21 HET MAN A 11 22 HET ASN B 501 16 HET GOL B 513 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ASN ASPARAGINE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 8(C6 H12 O6) FORMUL 3 ASN C4 H8 N2 O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *268(H2 O) HELIX 1 AA1 ASP B 92 ASN B 104 1 13 HELIX 2 AA2 PRO B 111 ASP B 113 5 3 HELIX 3 AA3 ASP B 167 ALA B 170 5 4 HELIX 4 AA4 ASN B 205 PHE B 212 5 8 HELIX 5 AA5 ASN B 245 ASN B 254 1 10 HELIX 6 AA6 ASN B 254 LEU B 259 1 6 HELIX 7 AA7 LEU B 259 ARG B 264 1 6 HELIX 8 AA8 SER B 286 TYR B 304 1 19 HELIX 9 AA9 SER B 330 MET B 345 1 16 HELIX 10 AB1 LYS B 370 TRP B 372 5 3 HELIX 11 AB2 THR B 391 GLN B 394 5 4 HELIX 12 AB3 SER B 411 GLY B 422 1 12 HELIX 13 AB4 SER B 432 ALA B 434 5 3 HELIX 14 AB5 LYS B 435 ARG B 442 1 8 HELIX 15 AB6 GLY B 445 GLY B 452 1 8 SHEET 1 AA1 4 ARG B 51 ASP B 52 0 SHEET 2 AA1 4 THR B 68 LYS B 74 -1 O LYS B 74 N ARG B 51 SHEET 3 AA1 4 GLU B 133 ARG B 139 -1 O ILE B 138 N TYR B 69 SHEET 4 AA1 4 VAL B 115 PHE B 117 -1 N THR B 116 O THR B 137 SHEET 1 AA2 4 SER B 59 LEU B 64 0 SHEET 2 AA2 4 HIS B 172 ASP B 179 1 O LYS B 178 N LEU B 64 SHEET 3 AA2 4 TYR B 150 ALA B 155 -1 N TYR B 150 O VAL B 177 SHEET 4 AA2 4 LYS B 90 ILE B 91 -1 N LYS B 90 O ALA B 155 SHEET 1 AA3 4 SER B 59 LEU B 64 0 SHEET 2 AA3 4 HIS B 172 ASP B 179 1 O LYS B 178 N LEU B 64 SHEET 3 AA3 4 TYR B 150 ALA B 155 -1 N TYR B 150 O VAL B 177 SHEET 4 AA3 4 ALA B 108 LEU B 109 1 N ALA B 108 O ALA B 151 SHEET 1 AA4 6 ARG B 239 GLN B 243 0 SHEET 2 AA4 6 VAL B 223 ASP B 234 -1 N ASN B 230 O GLN B 243 SHEET 3 AA4 6 LYS B 268 LEU B 274 1 O LEU B 270 N VAL B 224 SHEET 4 AA4 6 GLY B 308 ALA B 312 1 O ASN B 310 N LEU B 273 SHEET 5 AA4 6 LEU B 349 ASP B 354 1 O PHE B 353 N TYR B 311 SHEET 6 AA4 6 ILE B 375 ALA B 378 1 O VAL B 377 N ASP B 354 SHEET 1 AA5 5 ARG B 239 GLN B 243 0 SHEET 2 AA5 5 VAL B 223 ASP B 234 -1 N ASN B 230 O GLN B 243 SHEET 3 AA5 5 GLN B 194 GLU B 200 1 N PHE B 199 O VAL B 225 SHEET 4 AA5 5 TRP B 425 PHE B 429 1 O GLY B 428 N PHE B 198 SHEET 5 AA5 5 SER B 396 GLU B 401 1 N GLY B 397 O TRP B 425 SHEET 1 AA6 2 THR B 363 VAL B 364 0 SHEET 2 AA6 2 VAL B 367 ASP B 368 -1 O VAL B 367 N VAL B 364 SHEET 1 AA7 2 ILE B 460 PHE B 461 0 SHEET 2 AA7 2 TYR B 470 LYS B 471 -1 O TYR B 470 N PHE B 461 LINK ND2 ASN B 501 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.40 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.41 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.41 LINK O6 BMA A 3 C1 MAN A 7 1555 1555 1.39 LINK O2 MAN A 4 C1 MAN A 5 1555 1555 1.41 LINK O2 MAN A 5 C1 MAN A 6 1555 1555 1.41 LINK O3 MAN A 7 C1 MAN A 8 1555 1555 1.40 LINK O6 MAN A 7 C1 MAN A 10 1555 1555 1.40 LINK O2 MAN A 8 C1 MAN A 9 1555 1555 1.42 LINK O2 MAN A 10 C1 MAN A 11 1555 1555 1.39 CISPEP 1 PHE B 227 ALA B 228 0 -1.48 CISPEP 2 TYR B 472 PRO B 473 0 2.89 CRYST1 115.495 115.495 97.422 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008658 0.004999 0.000000 0.00000 SCALE2 0.000000 0.009998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010265 0.00000