HEADER HYDROLASE 06-NOV-19 6TCW TITLE CRYSTAL STRUCTURE OF BACTEROIDES THETAIOTAMICRON ENDOBT-3987 WITH TITLE 2 MAN5GLCNAC PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_3987; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-B-N-ACETYLGLUCOSAMINIDASE, ENDOBT, GLYCOSIDE HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.TRASTOY,J.J.DU,E.H.KLONTZ,J.O.CIFUENTE,E.J.SUNDBERG,M.E.GUERIN REVDAT 3 24-JAN-24 6TCW 1 HETSYN LINK REVDAT 2 29-JUL-20 6TCW 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 26-FEB-20 6TCW 0 JRNL AUTH B.TRASTOY,J.J.DU,E.H.KLONTZ,C.LI,J.O.CIFUENTE,L.X.WANG, JRNL AUTH 2 E.J.SUNDBERG,M.E.GUERIN JRNL TITL STRUCTURAL BASIS OF MAMMALIAN HIGH-MANNOSE N-GLYCAN JRNL TITL 2 PROCESSING BY HUMAN GUT BACTEROIDES. JRNL REF NAT COMMUN V. 11 899 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32060313 JRNL DOI 10.1038/S41467-020-14754-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 125887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 6287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9970 - 4.9436 0.97 3948 212 0.1684 0.1684 REMARK 3 2 4.9436 - 3.9336 0.98 4006 207 0.1434 0.1497 REMARK 3 3 3.9336 - 3.4393 0.98 4017 213 0.1523 0.1692 REMARK 3 4 3.4393 - 3.1261 0.96 3903 199 0.1708 0.1708 REMARK 3 5 3.1261 - 2.9027 0.98 3989 213 0.1749 0.2018 REMARK 3 6 2.9027 - 2.7321 0.98 4018 214 0.1716 0.1716 REMARK 3 7 2.7321 - 2.5955 0.98 3988 214 0.1674 0.1943 REMARK 3 8 2.5955 - 2.4828 0.98 4018 210 0.1754 0.1907 REMARK 3 9 2.4828 - 2.3873 0.98 4032 209 0.1752 0.1994 REMARK 3 10 2.3873 - 2.3051 0.96 3893 207 0.1672 0.2085 REMARK 3 11 2.3051 - 2.2331 0.98 3995 204 0.1687 0.1959 REMARK 3 12 2.2331 - 2.1694 0.98 4015 215 0.1688 0.1938 REMARK 3 13 2.1694 - 2.1123 0.99 4038 211 0.1687 0.2167 REMARK 3 14 2.1123 - 2.0608 0.98 3993 206 0.1689 0.1899 REMARK 3 15 2.0608 - 2.0140 0.97 4005 212 0.1629 0.1968 REMARK 3 16 2.0140 - 1.9712 0.98 3971 209 0.1683 0.1886 REMARK 3 17 1.9712 - 1.9318 0.98 4021 212 0.1720 0.2017 REMARK 3 18 1.9318 - 1.8954 0.98 3965 211 0.1680 0.1897 REMARK 3 19 1.8954 - 1.8616 0.99 4056 215 0.1677 0.1785 REMARK 3 20 1.8616 - 1.8300 0.97 3924 208 0.1755 0.1918 REMARK 3 21 1.8300 - 1.8005 0.97 4031 214 0.1838 0.1838 REMARK 3 22 1.8005 - 1.7728 0.99 4006 211 0.1962 0.2144 REMARK 3 23 1.7728 - 1.7468 0.97 3965 207 0.1976 0.2236 REMARK 3 24 1.7468 - 1.7222 0.98 3988 210 0.2141 0.2308 REMARK 3 25 1.7222 - 1.6989 0.98 3994 208 0.2251 0.2353 REMARK 3 26 1.6989 - 1.6769 0.97 4020 211 0.2366 0.3026 REMARK 3 27 1.6769 - 1.6559 0.98 3922 199 0.2286 0.2612 REMARK 3 28 1.6559 - 1.6360 0.97 4000 209 0.2339 0.2494 REMARK 3 29 1.6360 - 1.6170 0.98 3968 209 0.2471 0.2805 REMARK 3 30 1.6170 - 1.5990 0.96 3911 208 0.2732 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5386 10.8793 15.2932 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1489 REMARK 3 T33: 0.2632 T12: -0.0067 REMARK 3 T13: -0.0028 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.8339 L22: 3.1641 REMARK 3 L33: 1.5654 L12: 0.5249 REMARK 3 L13: -0.2031 L23: -0.1517 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.0170 S13: -0.1780 REMARK 3 S21: -0.0969 S22: 0.0383 S23: 0.1800 REMARK 3 S31: 0.0447 S32: 0.0245 S33: -0.0639 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2073 10.1010 14.2155 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1063 REMARK 3 T33: 0.2025 T12: 0.0214 REMARK 3 T13: 0.0010 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.4070 L22: 4.4936 REMARK 3 L33: 2.1341 L12: 0.8003 REMARK 3 L13: 0.0094 L23: -0.3604 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.0623 S13: -0.3471 REMARK 3 S21: -0.0827 S22: 0.0062 S23: -0.2344 REMARK 3 S31: 0.0891 S32: -0.0425 S33: -0.0681 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9207 38.2560 22.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0931 REMARK 3 T33: 0.0935 T12: 0.0212 REMARK 3 T13: 0.0079 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5928 L22: 0.4870 REMARK 3 L33: 0.8093 L12: 0.2637 REMARK 3 L13: 0.1035 L23: -0.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0948 S13: 0.1097 REMARK 3 S21: -0.0169 S22: 0.0104 S23: 0.0184 REMARK 3 S31: -0.0503 S32: -0.0651 S33: 0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125887 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 19.997 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3POH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 200 MM CACL2 AND REMARK 280 20% (W/V) PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.12500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 ASP A 27 REMARK 465 ASP A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 VAL A 31 REMARK 465 GLY A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 ILE A 35 REMARK 465 ASP A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 TYR A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 ILE A 43 REMARK 465 TYR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 ASN A 47 REMARK 465 ALA A 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 SER A 78 OG REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASN A 104 CG OD1 ND2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 ASN A 128 CG OD1 ND2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 SER A 161 OG REMARK 470 ASP A 162 CG OD1 OD2 REMARK 470 ILE A 163 CG1 CG2 CD1 REMARK 470 THR A 164 OG1 CG2 REMARK 470 ILE A 165 CG1 CG2 CD1 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 474 CG OD1 OD2 REMARK 470 LEU A 476 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 385 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 36.32 71.27 REMARK 500 ALA A 183 49.06 -109.63 REMARK 500 ASN A 276 48.84 -159.90 REMARK 500 GLN A 284 30.58 -141.07 REMARK 500 TYR A 315 3.56 81.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 183 10.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 908 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 182 O REMARK 620 2 ASN A 182 OD1 73.3 REMARK 620 3 GLY A 356 O 42.6 114.1 REMARK 620 4 HOH A1033 O 84.5 74.6 84.1 REMARK 620 5 HOH A1071 O 144.1 74.9 150.8 71.3 REMARK 620 6 HOH A1080 O 138.3 147.7 96.0 98.3 73.0 REMARK 620 7 HOH A1119 O 72.7 132.7 32.9 70.3 120.2 69.4 REMARK 620 8 HOH A1144 O 74.5 126.9 58.4 141.3 139.9 78.2 72.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 909 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL A 901 O2 REMARK 620 2 GOL A 901 O3 71.2 REMARK 620 3 HOH A1125 O 113.0 64.8 REMARK 620 4 HOH A1160 O 77.9 137.7 156.9 REMARK 620 5 HOH A1249 O 88.2 116.3 70.4 90.3 REMARK 620 6 NAG B 1 O1 79.2 72.1 126.6 74.3 161.8 REMARK 620 7 NAG B 1 O5 129.0 76.8 86.4 102.7 142.1 53.4 REMARK 620 8 NAG B 1 O6 159.5 129.1 78.7 85.5 79.8 108.0 66.2 REMARK 620 N 1 2 3 4 5 6 7 DBREF 6TCW A 27 476 UNP Q8A0N4 Q8A0N4_BACTN 27 476 SEQADV 6TCW GLY A 26 UNP Q8A0N4 EXPRESSION TAG SEQRES 1 A 451 GLY ASP ASP LEU GLU VAL GLY LYS ASN ILE ASP GLU SER SEQRES 2 A 451 ALA TYR SER GLY ILE TYR GLU ASN ASN ALA TYR LEU ARG SEQRES 3 A 451 ASP GLY LYS SER ASN LEU VAL SER LYS VAL VAL GLU LEU SEQRES 4 A 451 HIS GLY GLU THR TYR ALA THR THR VAL LYS MET GLY LEU SEQRES 5 A 451 SER LYS THR PRO ASN THR ALA THR SER ALA LYS VAL LYS SEQRES 6 A 451 ILE ASP ALA ALA TYR LEU GLU THR TYR ASN LYS ALA HIS SEQRES 7 A 451 ASN THR ASP PHE ALA LEU TYR PRO GLN ASP LEU VAL THR SEQRES 8 A 451 PHE ALA ASN GLU GLY ILE LEU THR VAL ASN ALA ASN THR SEQRES 9 A 451 LYS SER ALA GLU VAL GLU MET THR ILE ARG ALA GLY GLU SEQRES 10 A 451 GLY LEU GLN GLU ASP LYS THR TYR ALA ILE PRO VAL ALA SEQRES 11 A 451 ILE SER ASP GLN SER SER ASP ILE THR ILE LYS ASP GLU SEQRES 12 A 451 ASP ALA LYS HIS CYS ILE TYR LEU VAL LYS ASP MET ARG SEQRES 13 A 451 ASN ALA GLY ASP ALA TYR LYS GLY GLU GLY VAL MET GLN SEQRES 14 A 451 GLY TYR LEU PHE PHE GLU VAL ASN ASP VAL ASN PRO LEU SEQRES 15 A 451 ASN THR LEU SER PHE GLN LEU GLU ASN GLY LYS LEU LEU SEQRES 16 A 451 TRP ASP VAL VAL VAL LEU PHE ALA ALA ASN ILE ASN TYR SEQRES 17 A 451 ASP ALA GLU ALA GLY ARG PRO ARG VAL GLN CYS ASN PRO SEQRES 18 A 451 ASN VAL GLN TYR LEU LEU ASP ASN ASN GLU THR LEU LEU SEQRES 19 A 451 GLN PRO LEU ARG ARG ARG GLY VAL LYS VAL LEU LEU GLY SEQRES 20 A 451 LEU LEU GLY ASN HIS ASP ILE THR GLY LEU ALA GLN LEU SEQRES 21 A 451 SER GLU GLN GLY ALA LYS ASP PHE ALA ARG GLU VAL ALA SEQRES 22 A 451 GLN TYR CYS LYS ALA TYR ASN LEU ASP GLY VAL ASN TYR SEQRES 23 A 451 ASP ASP GLU TYR SER ASN SER PRO ASP LEU SER ASN PRO SEQRES 24 A 451 SER LEU THR ASN PRO SER THR ALA ALA ALA ALA ARG LEU SEQRES 25 A 451 CYS TYR GLU THR LYS GLN ALA MET PRO ASP LYS LEU VAL SEQRES 26 A 451 THR VAL PHE ASP TRP GLY GLN MET TYR GLY VAL ALA THR SEQRES 27 A 451 VAL ASP GLY VAL ASP ALA LYS GLU TRP ILE ASP ILE VAL SEQRES 28 A 451 VAL ALA ASN TYR GLY SER ALA ALA TYR PRO ILE GLY GLN SEQRES 29 A 451 MET THR LYS LYS GLN CYS SER GLY ILE SER MET GLU PHE SEQRES 30 A 451 ASN LEU GLY GLY GLY GLY SER LEU SER ALA SER LYS ALA SEQRES 31 A 451 GLN SER MET ILE ASP GLY GLY TYR GLY TRP PHE MET GLY SEQRES 32 A 451 PHE ALA PRO SER PRO ALA LYS TYR GLY SER VAL PHE SER SEQRES 33 A 451 ARG LEU GLN GLY GLY GLY GLU VAL LEU TYR GLY SER ASN SEQRES 34 A 451 VAL ALA ALA PRO THR ILE PHE TYR LYS LYS ASN ASP PRO SEQRES 35 A 451 THR PRO TYR LYS TYR PRO ASP ASP LEU HET NAG B 1 15 HET BMA B 2 11 HET MAN B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET GOL A 901 14 HET CA A 908 1 HET CA A 909 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 4(C6 H12 O6) FORMUL 3 GOL C3 H8 O3 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *300(H2 O) HELIX 1 AA1 ASP A 92 ASN A 104 1 13 HELIX 2 AA2 PRO A 111 ASP A 113 5 3 HELIX 3 AA3 ASN A 119 ILE A 122 5 4 HELIX 4 AA4 ALA A 127 THR A 129 5 3 HELIX 5 AA5 ASP A 167 LYS A 171 1 5 HELIX 6 AA6 ASN A 205 PHE A 212 5 8 HELIX 7 AA7 ASN A 245 ASN A 254 1 10 HELIX 8 AA8 ASN A 254 LEU A 259 1 6 HELIX 9 AA9 LEU A 259 ARG A 265 1 7 HELIX 10 AB1 SER A 286 TYR A 304 1 19 HELIX 11 AB2 SER A 330 MET A 345 1 16 HELIX 12 AB3 LYS A 370 TRP A 372 5 3 HELIX 13 AB4 THR A 391 GLN A 394 5 4 HELIX 14 AB5 SER A 411 GLY A 421 1 11 HELIX 15 AB6 SER A 432 ALA A 434 5 3 HELIX 16 AB7 LYS A 435 ARG A 442 1 8 HELIX 17 AB8 GLY A 445 GLY A 452 1 8 SHEET 1 AA1 4 LEU A 50 ASP A 52 0 SHEET 2 AA1 4 THR A 68 GLY A 76 -1 O LYS A 74 N ARG A 51 SHEET 3 AA1 4 SER A 131 ARG A 139 -1 O ALA A 132 N MET A 75 SHEET 4 AA1 4 VAL A 115 PHE A 117 -1 N THR A 116 O THR A 137 SHEET 1 AA2 4 LEU A 50 ASP A 52 0 SHEET 2 AA2 4 THR A 68 GLY A 76 -1 O LYS A 74 N ARG A 51 SHEET 3 AA2 4 SER A 131 ARG A 139 -1 O ALA A 132 N MET A 75 SHEET 4 AA2 4 THR A 124 ASN A 126 -1 N ASN A 126 O SER A 131 SHEET 1 AA3 4 SER A 59 LEU A 64 0 SHEET 2 AA3 4 HIS A 172 ASP A 179 1 O LYS A 178 N VAL A 62 SHEET 3 AA3 4 THR A 149 SER A 157 -1 N TYR A 150 O VAL A 177 SHEET 4 AA3 4 LYS A 88 ILE A 91 -1 N LYS A 88 O SER A 157 SHEET 1 AA4 4 SER A 59 LEU A 64 0 SHEET 2 AA4 4 HIS A 172 ASP A 179 1 O LYS A 178 N VAL A 62 SHEET 3 AA4 4 THR A 149 SER A 157 -1 N TYR A 150 O VAL A 177 SHEET 4 AA4 4 ALA A 108 LEU A 109 1 N ALA A 108 O ALA A 151 SHEET 1 AA5 6 ARG A 239 GLN A 243 0 SHEET 2 AA5 6 VAL A 223 ASP A 234 -1 N ASP A 234 O ARG A 239 SHEET 3 AA5 6 LYS A 268 LEU A 274 1 O LEU A 270 N LEU A 226 SHEET 4 AA5 6 GLY A 308 ASP A 312 1 O ASN A 310 N LEU A 273 SHEET 5 AA5 6 LEU A 349 ASP A 354 1 O PHE A 353 N TYR A 311 SHEET 6 AA5 6 ILE A 375 ALA A 378 1 O VAL A 377 N ASP A 354 SHEET 1 AA6 5 ARG A 239 GLN A 243 0 SHEET 2 AA6 5 VAL A 223 ASP A 234 -1 N ASP A 234 O ARG A 239 SHEET 3 AA6 5 GLN A 194 GLU A 200 1 N LEU A 197 O VAL A 225 SHEET 4 AA6 5 TRP A 425 PHE A 429 1 O GLY A 428 N PHE A 198 SHEET 5 AA6 5 SER A 396 GLU A 401 1 N GLY A 397 O TRP A 425 SHEET 1 AA7 2 THR A 363 VAL A 364 0 SHEET 2 AA7 2 VAL A 367 ASP A 368 -1 O VAL A 367 N VAL A 364 SHEET 1 AA8 2 ILE A 460 PHE A 461 0 SHEET 2 AA8 2 TYR A 470 LYS A 471 -1 O TYR A 470 N PHE A 461 LINK O4 NAG B 1 C1 BMA B 2 1555 1555 1.39 LINK O6 BMA B 2 C1 MAN B 3 1555 1555 1.40 LINK O3 BMA B 2 C1 MAN B 6 1555 1555 1.39 LINK O3 MAN B 3 C1 MAN B 4 1555 1555 1.41 LINK O6 MAN B 3 C1 MAN B 5 1555 1555 1.41 LINK O ASN A 182 CA CA A 908 1555 1555 2.31 LINK OD1 ASN A 182 CA CA A 908 1555 1555 2.50 LINK O GLY A 356 CA CA A 908 1555 4456 2.34 LINK O2 GOL A 901 CA CA A 909 1555 1555 2.26 LINK O3 GOL A 901 CA CA A 909 1555 1555 2.50 LINK CA CA A 908 O HOH A1033 1555 4556 2.58 LINK CA CA A 908 O HOH A1071 1555 4556 2.59 LINK CA CA A 908 O HOH A1080 1555 4556 2.46 LINK CA CA A 908 O HOH A1119 1555 1555 2.66 LINK CA CA A 908 O HOH A1144 1555 1555 2.46 LINK CA CA A 909 O HOH A1125 1555 1555 2.67 LINK CA CA A 909 O HOH A1160 1555 1555 2.61 LINK CA CA A 909 O HOH A1249 1555 1555 2.42 LINK CA CA A 909 O1 NAG B 1 1555 1555 2.47 LINK CA CA A 909 O5 NAG B 1 1555 1555 2.60 LINK CA CA A 909 O6 NAG B 1 1555 1555 2.42 CISPEP 1 PHE A 227 ALA A 228 0 -0.82 CISPEP 2 TYR A 472 PRO A 473 0 2.29 CRYST1 76.250 133.440 49.460 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020218 0.00000