HEADER TRANSFERASE 12-NOV-19 6TEL TITLE CRYSTAL STRUCTURE OF DOT1L IN COMPLEX WITH AN INHIBITOR (COMPOUND 10). COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN,HISTONE H3-K79 METHYLTRANSFERASE,H3-K79- COMPND 5 HMTASE,LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOT1L, COMPLEX STRUCTURE, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHEUFLER,F.STAUFFER,C.BE,H.MOEBITZ REVDAT 3 24-JAN-24 6TEL 1 LINK REVDAT 2 01-JAN-20 6TEL 1 JRNL REVDAT 1 11-DEC-19 6TEL 0 JRNL AUTH F.STAUFFER,A.WEISS,C.SCHEUFLER,H.MOBITZ,C.RAGOT,K.S.BEYER, JRNL AUTH 2 K.CALKINS,D.GUTHY,M.KIFFE,B.VAN EERDENBRUGH,R.TIEDT,C.GAUL JRNL TITL NEW POTENT DOT1L INHIBITORS FORIN VIVOEVALUATION IN MOUSE. JRNL REF ACS MED.CHEM.LETT. V. 10 1655 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31857842 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00452 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 54909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2749 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1099 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2305 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1044 REMARK 3 BIN R VALUE (WORKING SET) : 0.2306 REMARK 3 BIN FREE R VALUE : 0.2302 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 55 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.67840 REMARK 3 B22 (A**2) : 4.67840 REMARK 3 B33 (A**2) : -9.35690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.159 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.142 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.161 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5209 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7086 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1734 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 866 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5209 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 668 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6057 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 44.0474 -7.6477 8.1964 REMARK 3 T TENSOR REMARK 3 T11: -0.2513 T22: -0.2019 REMARK 3 T33: 0.0057 T12: 0.0157 REMARK 3 T13: -0.0469 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 3.5814 L22: 3.2364 REMARK 3 L33: 0.9223 L12: -1.3916 REMARK 3 L13: 0.4461 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: -0.3671 S13: -0.2164 REMARK 3 S21: 0.4219 S22: 0.1885 S23: -0.6319 REMARK 3 S31: -0.0572 S32: 0.1602 S33: -0.0967 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* M|* } REMARK 3 ORIGIN FOR THE GROUP (A): 35.8098 -37.2033 8.2484 REMARK 3 T TENSOR REMARK 3 T11: -0.1875 T22: -0.2592 REMARK 3 T33: 0.0883 T12: 0.0639 REMARK 3 T13: -0.0250 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 2.9171 L22: 2.2748 REMARK 3 L33: 0.6581 L12: -0.3166 REMARK 3 L13: -0.6301 L23: -0.0625 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.1437 S13: -0.4432 REMARK 3 S21: 0.1359 S22: -0.1557 S23: -0.5253 REMARK 3 S31: 0.2921 S32: 0.0630 S33: 0.1716 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00006 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 42.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.26 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.29 REMARK 200 R MERGE FOR SHELL (I) : 1.15600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DRT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.28 M K/NA TARTRATE 0.1 M HEPES PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.07000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 28 REMARK 465 LYS A 29 REMARK 465 HIS A 30 REMARK 465 THR A 92 REMARK 465 THR A 93 REMARK 465 GLN A 94 REMARK 465 PRO A 95 REMARK 465 MET A 96 REMARK 465 LYS A 97 REMARK 465 LEU A 98 REMARK 465 GLU A 123 REMARK 465 LYS A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 VAL A 303 REMARK 465 GLY A 333 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 29 REMARK 465 HIS B 30 REMARK 465 THR B 93 REMARK 465 GLN B 94 REMARK 465 PRO B 95 REMARK 465 MET B 96 REMARK 465 LYS B 97 REMARK 465 PRO B 122 REMARK 465 GLU B 123 REMARK 465 LYS B 124 REMARK 465 LEU B 125 REMARK 465 ASN B 331 REMARK 465 PRO B 332 REMARK 465 GLY B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 26 CG1 CG2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 TYR A 58 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 59 CG1 CG2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 73 NE CZ NH1 NH2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 TYR A 128 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 SER A 304 OG REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 ASN B 99 CG OD1 ND2 REMARK 470 ASN B 126 CG OD1 ND2 REMARK 470 ASN B 127 CG OD1 ND2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 180 CD CE NZ REMARK 470 ARG B 220 NE CZ NH1 NH2 REMARK 470 LYS B 261 CE NZ REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 SER B 281 OG REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 SER B 302 OG REMARK 470 SER B 304 OG REMARK 470 SER B 328 OG REMARK 470 LYS B 330 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 127 -17.36 -142.78 REMARK 500 ASN B 99 86.60 -69.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 52 O REMARK 620 2 LEU B 53 O 74.1 REMARK 620 3 MET B 55 O 81.2 87.8 REMARK 620 4 ASN B 57 OD1 59.7 130.6 69.9 REMARK 620 5 HOH B 599 O 74.9 97.4 153.1 87.2 REMARK 620 6 HOH B 604 O 132.2 153.0 90.7 73.3 96.1 REMARK 620 7 HOH B 612 O 146.6 76.7 81.7 137.6 125.2 76.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N4Z A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N4Z B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TE6 RELATED DB: PDB DBREF 6TEL A 2 332 UNP Q8TEK3 DOT1L_HUMAN 2 332 DBREF 6TEL B 2 332 UNP Q8TEK3 DOT1L_HUMAN 2 332 SEQADV 6TEL GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQADV 6TEL PRO A 1 UNP Q8TEK3 EXPRESSION TAG SEQADV 6TEL GLY A 333 UNP Q8TEK3 EXPRESSION TAG SEQADV 6TEL GLY B 0 UNP Q8TEK3 EXPRESSION TAG SEQADV 6TEL PRO B 1 UNP Q8TEK3 EXPRESSION TAG SEQADV 6TEL GLY B 333 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 334 GLY PRO GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 A 334 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 A 334 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 A 334 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 A 334 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 A 334 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 A 334 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 A 334 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 A 334 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 A 334 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 A 334 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 A 334 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 A 334 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 A 334 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 A 334 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 A 334 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 A 334 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 A 334 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 A 334 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 A 334 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 A 334 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 A 334 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 A 334 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 A 334 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 A 334 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 A 334 TYR PHE SER SER LEU LYS ASN PRO GLY SEQRES 1 B 334 GLY PRO GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 B 334 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 B 334 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 B 334 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 B 334 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 B 334 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 B 334 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 B 334 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 B 334 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 B 334 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 B 334 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 B 334 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 B 334 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 B 334 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 B 334 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 B 334 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 B 334 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 B 334 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 B 334 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 B 334 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 B 334 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 B 334 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 B 334 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 B 334 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 B 334 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 B 334 TYR PHE SER SER LEU LYS ASN PRO GLY HET N4Z A 401 45 HET N4Z B 401 45 HET K B 402 1 HETNAM N4Z ~{N}1-[(~{S})-[2,2-BIS(FLUORANYL)-1,3-BENZODIOXOL-4- HETNAM 2 N4Z YL]-(3-CHLORANYLPYRIDIN-2-YL)METHYL]-~{N}2-(4-METHOXY- HETNAM 3 N4Z 6-PIPERAZIN-1-YL-1,3,5-TRIAZIN-2-YL)-4-METHYLSULFONYL- HETNAM 4 N4Z BENZENE-1,2-DIAMINE HETNAM K POTASSIUM ION FORMUL 3 N4Z 2(C28 H27 CL F2 N8 O5 S) FORMUL 5 K K 1+ FORMUL 6 HOH *239(H2 O) HELIX 1 AA1 ASP A 32 ILE A 48 1 17 HELIX 2 AA2 ILE A 48 MET A 55 1 8 HELIX 3 AA3 GLU A 56 ILE A 61 5 6 HELIX 4 AA4 SER A 67 GLY A 91 1 25 HELIX 5 AA5 SER A 103 VAL A 119 1 17 HELIX 6 AA6 SER A 132 TYR A 136 5 5 HELIX 7 AA7 THR A 139 LYS A 152 1 14 HELIX 8 AA8 GLY A 167 THR A 177 1 11 HELIX 9 AA9 ALA A 188 GLY A 210 1 23 HELIX 10 AB1 SER A 225 ASN A 234 1 10 HELIX 11 AB2 GLY A 246 ALA A 258 1 13 HELIX 12 AB3 ASP A 286 THR A 289 5 4 HELIX 13 AB4 ARG A 319 ASN A 331 1 13 HELIX 14 AB5 ASP B 32 ILE B 48 1 17 HELIX 15 AB6 ILE B 48 MET B 55 1 8 HELIX 16 AB7 GLU B 56 ILE B 61 5 6 HELIX 17 AB8 SER B 67 THR B 92 1 26 HELIX 18 AB9 SER B 103 VAL B 119 1 17 HELIX 19 AC1 SER B 132 TYR B 136 5 5 HELIX 20 AC2 THR B 139 ILE B 151 1 13 HELIX 21 AC3 GLY B 167 THR B 177 1 11 HELIX 22 AC4 ALA B 188 GLY B 210 1 23 HELIX 23 AC5 SER B 225 ASN B 234 1 10 HELIX 24 AC6 GLY B 246 ALA B 258 1 13 HELIX 25 AC7 ASP B 286 THR B 289 5 4 HELIX 26 AC8 ARG B 319 LYS B 330 1 12 SHEET 1 AA1 2 GLU A 6 LEU A 9 0 SHEET 2 AA1 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 AA2 7 TYR A 216 ARG A 220 0 SHEET 2 AA2 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 AA2 7 LEU A 158 LEU A 162 1 N PHE A 159 O TYR A 183 SHEET 4 AA2 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 AA2 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 AA2 7 TYR A 312 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 AA2 7 MET A 291 LEU A 296 -1 N LEU A 296 O TYR A 312 SHEET 1 AA3 2 GLU B 6 LEU B 9 0 SHEET 2 AA3 2 ALA B 18 PRO B 21 -1 O TYR B 20 N LEU B 7 SHEET 1 AA4 7 TYR B 216 ARG B 220 0 SHEET 2 AA4 7 HIS B 181 GLU B 186 1 N GLY B 184 O GLU B 219 SHEET 3 AA4 7 LEU B 158 LEU B 162 1 N PHE B 159 O TYR B 183 SHEET 4 AA4 7 VAL B 237 VAL B 240 1 O PHE B 239 N VAL B 160 SHEET 5 AA4 7 ARG B 265 SER B 268 1 O VAL B 267 N ILE B 238 SHEET 6 AA4 7 TYR B 312 ILE B 317 -1 O HIS B 315 N ILE B 266 SHEET 7 AA4 7 MET B 291 LEU B 296 -1 N LEU B 296 O TYR B 312 LINK O LYS B 52 K K B 402 1555 1555 2.76 LINK O LEU B 53 K K B 402 1555 1555 3.03 LINK O MET B 55 K K B 402 1555 1555 2.63 LINK OD1 ASN B 57 K K B 402 1555 1555 3.11 LINK K K B 402 O HOH B 599 1555 1555 2.79 LINK K K B 402 O HOH B 604 1555 1555 3.46 LINK K K B 402 O HOH B 612 1555 1555 3.11 CISPEP 1 TRP A 22 PRO A 23 0 2.12 CISPEP 2 TRP B 22 PRO B 23 0 -4.40 SITE 1 AC1 18 PRO A 130 PHE A 131 SER A 140 LEU A 143 SITE 2 AC1 18 VAL A 144 MET A 147 VAL A 169 PHE A 239 SITE 3 AC1 18 VAL A 240 ASN A 241 PHE A 243 VAL A 267 SITE 4 AC1 18 SER A 268 SER A 269 VAL A 310 SER A 311 SITE 5 AC1 18 TYR A 312 HIS B 35 SITE 1 AC2 17 GLU B 129 PRO B 130 PHE B 131 SER B 140 SITE 2 AC2 17 LEU B 143 VAL B 144 MET B 147 PHE B 239 SITE 3 AC2 17 VAL B 240 ASN B 241 PHE B 243 VAL B 267 SITE 4 AC2 17 SER B 268 SER B 269 VAL B 310 SER B 311 SITE 5 AC2 17 TYR B 312 SITE 1 AC3 5 LYS B 52 LEU B 53 MET B 55 ASN B 57 SITE 2 AC3 5 HOH B 599 CRYST1 159.160 159.160 74.140 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006283 0.003627 0.000000 0.00000 SCALE2 0.000000 0.007255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013488 0.00000