HEADER RNA 12-NOV-19 6TF0 TITLE CRYSTAL STRUCTURE OF THE ADP-BINDING DOMAIN OF THE NAD+ RIBOSWITCH TITLE 2 WITH NICOTINAMIDE ADENINE DINUCLEOTIDE, REDUCED (NADH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CANDIDATUS KORIBACTER VERSATILIS ELLIN345; SOURCE 4 ORGANISM_TAXID: 204669 KEYWDS RNA STRUCTURE; TRNA-MIMICKING; X-RAY CRYSTALLOGRAPHY, RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 1 23-SEP-20 6TF0 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL STRUCTURE AND LIGAND BINDING OF THE ADP-BINDING DOMAIN OF JRNL TITL 2 THE NAD+ RIBOSWITCH. JRNL REF RNA V. 26 878 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 32295864 JRNL DOI 10.1261/RNA.074898.120 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1100 - 4.8000 0.99 2951 96 0.1584 0.2192 REMARK 3 2 4.8000 - 3.8100 0.99 2936 106 0.1625 0.1770 REMARK 3 3 3.8100 - 3.3300 0.99 2894 130 0.2014 0.2246 REMARK 3 4 3.3300 - 3.0300 0.98 2859 133 0.2273 0.2915 REMARK 3 5 3.0300 - 2.8100 0.99 2839 164 0.2814 0.3683 REMARK 3 6 2.8100 - 2.6500 0.99 2895 139 0.3075 0.2996 REMARK 3 7 2.6500 - 2.5100 0.99 2899 120 0.3226 0.3967 REMARK 3 8 2.5100 - 2.4000 0.99 2869 153 0.3111 0.3233 REMARK 3 9 2.4000 - 2.3100 0.98 2820 156 0.3436 0.3700 REMARK 3 10 2.3100 - 2.2300 0.98 2835 158 0.3764 0.4149 REMARK 3 11 2.2300 - 2.1600 0.98 2860 163 0.4659 0.4230 REMARK 3 12 2.1600 - 2.1000 0.98 2867 132 0.4652 0.5052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1275 REMARK 3 ANGLE : 1.652 1986 REMARK 3 CHIRALITY : 0.072 262 REMARK 3 PLANARITY : 0.014 53 REMARK 3 DIHEDRAL : 14.678 624 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0606 -1.6814 22.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.4702 T22: 0.6889 REMARK 3 T33: 0.5353 T12: 0.0505 REMARK 3 T13: 0.0406 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 5.8750 L22: 3.1366 REMARK 3 L33: 4.5838 L12: -0.4064 REMARK 3 L13: 1.7990 L23: -0.4340 REMARK 3 S TENSOR REMARK 3 S11: 0.2584 S12: 0.7963 S13: -0.2960 REMARK 3 S21: -0.3111 S22: 0.0172 S23: 0.3767 REMARK 3 S31: 0.0831 S32: -0.2976 S33: -0.2567 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8815 10.5216 45.9525 REMARK 3 T TENSOR REMARK 3 T11: 0.8065 T22: 0.8640 REMARK 3 T33: 0.7646 T12: 0.0293 REMARK 3 T13: 0.0639 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: -0.0411 L22: 7.7000 REMARK 3 L33: 5.5085 L12: -2.2177 REMARK 3 L13: -1.3326 L23: 6.9979 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.3486 S13: 0.6486 REMARK 3 S21: -0.1960 S22: 0.0981 S23: -0.3103 REMARK 3 S31: -0.5677 S32: -0.1380 S33: -0.0284 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1682 -1.7018 19.5585 REMARK 3 T TENSOR REMARK 3 T11: 0.5054 T22: 0.8939 REMARK 3 T33: 0.6226 T12: 0.0884 REMARK 3 T13: -0.0095 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.6851 L22: 2.6815 REMARK 3 L33: 2.9745 L12: -0.0621 REMARK 3 L13: 1.4158 L23: -1.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: 0.5583 S13: 0.0531 REMARK 3 S21: -0.2257 S22: 0.1318 S23: 0.3053 REMARK 3 S31: -0.0463 S32: -0.6308 S33: -0.2198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9195 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.1 M MG REMARK 280 ACETATE, 0.05 M SODIUM CACODYLATE PH 6.6, 10% W/V POLYETHYLENE REMARK 280 GLYCOL 3350 (30% PEG200), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.63600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.61500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.54250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.63600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.54250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.63600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.61500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.54250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.63600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.61500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.54250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO3' CBV A 3 P U A 4 0.95 REMARK 500 OP1 A A 8 MG MG A 105 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' G A 2 O2' G A 2 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 6 C5 - C4 - N4 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 7 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 A A 8 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 C A 15 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 G A 20 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 U A 43 C5 - C6 - N1 ANGL. DEV. = -3.4 DEGREES REMARK 500 A A 44 C8 - N9 - C4 ANGL. DEV. = 2.6 DEGREES REMARK 500 U A 46 N1 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 U A 46 N3 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 G A 47 N1 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAI A 111 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP2 REMARK 620 2 C A 9 OP2 98.9 REMARK 620 3 HOH A 208 O 93.2 160.4 REMARK 620 4 HOH A 210 O 86.8 85.9 79.4 REMARK 620 5 HOH A 213 O 167.2 91.1 75.0 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 11 OP2 REMARK 620 2 U A 17 OP1 33.3 REMARK 620 3 HOH A 204 O 24.9 8.5 REMARK 620 4 HOH A 209 O 43.3 12.0 19.0 REMARK 620 5 HOH A 212 O 37.6 4.6 13.0 10.3 REMARK 620 6 HOH A 215 O 32.1 12.6 12.2 13.5 15.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 15 O2 REMARK 620 2 G A 36 O6 96.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 47 O6 REMARK 620 2 HOH A 205 O 73.3 REMARK 620 3 HOH A 211 O 79.1 88.1 REMARK 620 4 HOH A 218 O 89.6 161.2 80.6 REMARK 620 5 HOH A 221 O 127.2 90.8 152.0 106.2 REMARK 620 6 HOH A 225 O 146.7 93.1 70.0 97.2 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 206 O 104.9 REMARK 620 3 HOH A 217 O 115.1 91.8 REMARK 620 4 HOH A 222 O 86.5 162.8 94.9 REMARK 620 5 HOH A 224 O 102.7 78.2 142.2 86.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NAI A 111 O2A REMARK 620 2 NAI A 111 O1N 70.6 REMARK 620 3 HOH A 203 O 79.5 72.0 REMARK 620 4 HOH A 207 O 159.3 93.9 82.6 REMARK 620 5 HOH A 216 O 94.3 143.6 72.7 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 111 DBREF 6TF0 A 1 52 PDB 6TF0 6TF0 1 52 SEQRES 1 A 52 G G CBV U U C A A C A A C C SEQRES 2 A 52 C C G U A G G U U G G G C SEQRES 3 A 52 C G A A A G G C A G C G A SEQRES 4 A 52 A U C U A C U G G A G C C HET CBV A 3 32 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET MG A 107 1 HET MG A 108 1 HET NA A 109 1 HET NA A 110 1 HET NAI A 111 44 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 1 CBV C9 H13 BR N3 O8 P FORMUL 2 MG 8(MG 2+) FORMUL 10 NA 2(NA 1+) FORMUL 12 NAI C21 H29 N7 O14 P2 FORMUL 13 HOH *25(H2 O) LINK O3' G A 2 P CBV A 3 1555 1555 1.60 LINK O3' CBV A 3 P U A 4 1555 1555 1.60 LINK OP2 A A 8 MG MG A 101 1555 1555 2.09 LINK OP2 C A 9 MG MG A 101 1555 1555 1.94 LINK OP2 A A 11 MG MG A 102 1555 2655 2.02 LINK O2 C A 15 NA NA A 109 1555 1555 2.53 LINK OP1 U A 17 MG MG A 102 1555 1555 2.07 LINK O6 G A 36 NA NA A 109 1555 1555 2.50 LINK O6 G A 47 MG MG A 103 1555 1555 2.25 LINK MG MG A 101 O HOH A 208 1555 1555 2.19 LINK MG MG A 101 O HOH A 210 1555 1555 2.06 LINK MG MG A 101 O HOH A 213 1555 1555 2.03 LINK MG MG A 102 O HOH A 204 1555 1555 1.97 LINK MG MG A 102 O HOH A 209 1555 2655 2.03 LINK MG MG A 102 O HOH A 212 1555 1555 2.02 LINK MG MG A 102 O HOH A 215 1555 2655 1.86 LINK MG MG A 103 O HOH A 205 1555 1555 2.38 LINK MG MG A 103 O HOH A 211 1555 1555 2.29 LINK MG MG A 103 O HOH A 218 1555 1555 2.19 LINK MG MG A 103 O HOH A 221 1555 1555 2.52 LINK MG MG A 103 O HOH A 225 1555 1555 2.31 LINK MG MG A 104 O HOH A 201 1555 1555 1.98 LINK MG MG A 104 O HOH A 206 1555 1555 2.31 LINK MG MG A 104 O HOH A 217 1555 7545 1.92 LINK MG MG A 104 O HOH A 222 1555 1555 2.37 LINK MG MG A 104 O HOH A 224 1555 1555 2.12 LINK MG MG A 105 O2A NAI A 111 1555 1555 2.09 LINK MG MG A 105 O1N NAI A 111 1555 1555 2.38 LINK MG MG A 105 O HOH A 203 1555 1555 1.82 LINK MG MG A 105 O HOH A 207 1555 1555 2.21 LINK MG MG A 105 O HOH A 216 1555 1555 2.09 LINK MG MG A 107 O HOH A 202 1555 1555 2.97 SITE 1 AC1 6 A A 8 C A 9 A A 10 HOH A 208 SITE 2 AC1 6 HOH A 210 HOH A 213 SITE 1 AC2 6 A A 11 U A 17 HOH A 204 HOH A 209 SITE 2 AC2 6 HOH A 212 HOH A 215 SITE 1 AC3 6 G A 47 HOH A 205 HOH A 211 HOH A 218 SITE 2 AC3 6 HOH A 221 HOH A 225 SITE 1 AC4 6 G A 38 HOH A 201 HOH A 206 HOH A 217 SITE 2 AC4 6 HOH A 222 HOH A 224 SITE 1 AC5 5 A A 8 NAI A 111 HOH A 203 HOH A 207 SITE 2 AC5 5 HOH A 216 SITE 1 AC6 2 A A 7 G A 16 SITE 1 AC7 2 G A 23 HOH A 202 SITE 1 AC8 1 G A 32 SITE 1 AC9 3 A A 11 C A 15 G A 36 SITE 1 AD1 8 C A 6 A A 7 A A 8 G A 47 SITE 2 AD1 8 G A 48 MG A 105 HOH A 203 HOH A 216 CRYST1 57.272 59.230 191.085 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005233 0.00000