HEADER HYDROLASE 15-NOV-19 6TGD TITLE CRYSTAL STRUCTURE OF NDM-1 IN COMPLEX WITH TRIAZOLE-BASED INHIBITOR TITLE 2 OP31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NOT VISIBLE IN THE ELECTRON DENSITY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEW DELHI METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MASO,F.SPIRAKIS,M.SANTUCCI,C.SIMON,J.D.DOCQUIER,G.CRUCIANI, AUTHOR 2 M.P.COSTI,D.TONDI,L.CENDRON REVDAT 2 24-JAN-24 6TGD 1 REMARK REVDAT 1 26-AUG-20 6TGD 0 JRNL AUTH F.SPYRAKIS,M.SANTUCCI,L.MASO,S.CROSS,E.GIANQUINTO,F.SANNIO, JRNL AUTH 2 F.VERDIROSA,F.DE LUCA,J.D.DOCQUIER,L.CENDRON,D.TONDI, JRNL AUTH 3 A.VENTURELLI,G.CRUCIANI,M.P.COSTI JRNL TITL VIRTUAL SCREENING IDENTIFIES BROAD-SPECTRUM BETA-LACTAMASE JRNL TITL 2 INHIBITORS WITH ACTIVITY ON CLINICALLY RELEVANT SERINE- AND JRNL TITL 3 METALLO-CARBAPENEMASES. JRNL REF SCI REP V. 10 12763 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32728062 JRNL DOI 10.1038/S41598-020-69431-Y REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 84461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.5900 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.5980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3653 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4992 ; 1.789 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 6.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;30.749 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;14.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.652 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3653 ; 7.614 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 42.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6IBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MGCL2 EXAHYDRATE; 0.3 M CACL2 REMARK 280 DIHYDRATE; 25% W/V PEG 3350; 25% W/V MPD; 20% V/V PEG 1000; 0.1 REMARK 280 M MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.75050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.83250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.75050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.83250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 ILE A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY B 30 REMARK 465 GLU B 31 REMARK 465 ILE B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 MET B 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 146.14 75.45 REMARK 500 PRO B 68 125.59 -36.88 REMARK 500 PHE B 70 -49.86 -130.23 REMARK 500 ASP B 90 145.38 76.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP A 130 OD2 105.6 REMARK 620 3 HOH A 427 O 81.8 150.7 REMARK 620 4 HOH A 470 O 160.3 92.8 78.6 REMARK 620 5 HOH A 519 O 85.7 79.1 73.2 91.0 REMARK 620 6 HOH A 531 O 86.1 128.0 80.1 88.2 152.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 97.4 REMARK 620 3 HIS A 189 NE2 100.4 120.1 REMARK 620 4 N8Q A 305 N04 142.9 95.4 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 110.1 REMARK 620 3 HIS A 250 NE2 92.4 111.6 REMARK 620 4 N8Q A 305 S01 124.3 113.4 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 47.2 REMARK 620 3 ASP A 223 OD1 128.8 121.0 REMARK 620 4 ASP A 223 OD2 83.6 83.4 46.6 REMARK 620 5 HOH A 544 O 81.8 128.4 82.3 84.4 REMARK 620 6 GLU B 227 OE1 125.7 79.7 64.6 79.5 145.6 REMARK 620 7 GLU B 227 OE2 115.2 79.0 107.0 129.2 141.9 50.7 REMARK 620 8 HOH B 477 O 75.0 90.9 147.8 155.2 80.3 123.3 72.6 REMARK 620 9 HOH B 527 O 149.9 153.1 67.9 113.5 75.9 83.0 74.1 81.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 51.8 REMARK 620 3 HOH A 403 O 116.9 66.7 REMARK 620 4 GLU B 152 OE1 135.2 113.9 78.8 REMARK 620 5 GLU B 152 OE2 84.6 77.1 95.1 51.2 REMARK 620 6 ASP B 223 OD2 78.1 128.6 164.7 92.3 88.7 REMARK 620 7 HOH B 498 O 72.1 77.1 83.1 152.2 152.6 100.2 REMARK 620 8 HOH B 541 O 135.7 142.8 86.4 83.5 132.9 80.2 74.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 100.3 REMARK 620 3 HOH B 424 O 81.4 155.3 REMARK 620 4 HOH B 464 O 87.9 81.8 73.6 REMARK 620 5 HOH B 561 O 159.1 99.3 77.8 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 100.2 REMARK 620 3 HIS B 189 NE2 100.8 120.9 REMARK 620 4 N8Q B 305 N04 140.2 97.1 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 111.4 REMARK 620 3 HIS B 250 NE2 91.1 113.6 REMARK 620 4 N8Q B 305 S01 122.7 110.8 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N8Q A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N8Q B 305 DBREF 6TGD A 30 270 UNP M4JT39 M4JT39_PSEAI 24 265 DBREF 6TGD B 30 270 UNP M4JT39 M4JT39_PSEAI 24 265 SEQADV 6TGD A UNP M4JT39 ARG 27 DELETION SEQADV 6TGD B UNP M4JT39 ARG 27 DELETION SEQRES 1 A 241 GLY GLU ILE PRO THR ILE GLY GLN GLN MET GLU THR GLY SEQRES 2 A 241 ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU ALA SEQRES 3 A 241 PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET PRO SEQRES 4 A 241 GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL ARG SEQRES 5 A 241 ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP THR SEQRES 6 A 241 ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS GLN SEQRES 7 A 241 GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR HIS SEQRES 8 A 241 ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU HIS SEQRES 9 A 241 ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER ASN SEQRES 10 A 241 GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN HIS SEQRES 11 A 241 SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO ALA SEQRES 12 A 241 THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR PRO SEQRES 13 A 241 GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY ILE SEQRES 14 A 241 ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE LYS SEQRES 15 A 241 ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP ALA SEQRES 16 A 241 ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE GLY SEQRES 17 A 241 ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER HIS SEQRES 18 A 241 SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR ALA SEQRES 19 A 241 ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 241 GLY GLU ILE PRO THR ILE GLY GLN GLN MET GLU THR GLY SEQRES 2 B 241 ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU ALA SEQRES 3 B 241 PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET PRO SEQRES 4 B 241 GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL ARG SEQRES 5 B 241 ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP THR SEQRES 6 B 241 ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS GLN SEQRES 7 B 241 GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR HIS SEQRES 8 B 241 ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU HIS SEQRES 9 B 241 ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER ASN SEQRES 10 B 241 GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN HIS SEQRES 11 B 241 SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO ALA SEQRES 12 B 241 THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR PRO SEQRES 13 B 241 GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY ILE SEQRES 14 B 241 ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE LYS SEQRES 15 B 241 ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP ALA SEQRES 16 B 241 ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE GLY SEQRES 17 B 241 ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER HIS SEQRES 18 B 241 SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR ALA SEQRES 19 B 241 ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET N8Q A 305 18 HET ZN B 301 1 HET ZN B 302 1 HET CA B 303 1 HET CA B 304 1 HET N8Q B 305 18 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM N8Q 4-[[(2~{S})-OXOLAN-2-YL]METHYL]-3-PYRIDIN-3-YL-1~{H}-1, HETNAM 2 N8Q 2,4-TRIAZOLE-5-THIONE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 4(CA 2+) FORMUL 7 N8Q 2(C12 H14 N4 O S) FORMUL 13 HOH *346(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 PRO A 150 GLY A 153 5 4 HELIX 6 AA6 GLU A 170 ALA A 174 5 5 HELIX 7 AA7 GLY A 207 ILE A 210 5 4 HELIX 8 AA8 HIS A 228 PHE A 240 1 13 HELIX 9 AA9 ARG A 256 LYS A 268 1 13 HELIX 10 AB1 THR B 94 ILE B 109 1 16 HELIX 11 AB2 HIS B 122 GLY B 127 1 6 HELIX 12 AB3 GLY B 128 ALA B 135 1 8 HELIX 13 AB4 ALA B 143 ALA B 149 1 7 HELIX 14 AB5 PRO B 150 GLY B 153 5 4 HELIX 15 AB6 GLU B 170 ALA B 174 5 5 HELIX 16 AB7 HIS B 228 PHE B 240 1 13 HELIX 17 AB8 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 PHE A 205 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 VAL A 247 1 O VAL A 247 N ALA A 204 SHEET 1 AA3 8 ASP B 43 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O GLY B 71 N MET B 67 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O ARG B 85 N ASP B 82 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O ALA B 114 N VAL B 86 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O THR B 195 N PHE B 183 SHEET 3 AA4 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 LINK OD2 ASP A 95 CA CA A 304 1555 1555 2.41 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 1.98 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 1.94 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 1.96 LINK OD2 ASP A 130 CA CA A 304 1555 1555 2.29 LINK OE1 GLU A 152 CA CA A 303 1555 1555 2.70 LINK OE2 GLU A 152 CA CA A 303 1555 1555 2.74 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.03 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.31 LINK OD1 ASP A 223 CA CA A 303 1555 1555 3.00 LINK OD2 ASP A 223 CA CA A 303 1555 1555 2.52 LINK OE1 GLU A 227 CA CA B 304 1555 1555 2.55 LINK OE2 GLU A 227 CA CA B 304 1555 1555 2.51 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.09 LINK ZN ZN A 301 N04 N8Q A 305 1555 1555 2.19 LINK ZN ZN A 302 S01 N8Q A 305 1555 1555 2.19 LINK CA CA A 303 O HOH A 544 1555 1555 2.40 LINK CA CA A 303 OE1 GLU B 227 1555 1555 2.55 LINK CA CA A 303 OE2 GLU B 227 1555 1555 2.51 LINK CA CA A 303 O HOH B 477 1555 1555 2.24 LINK CA CA A 303 O HOH B 527 1555 1555 2.49 LINK CA CA A 304 O HOH A 427 1555 1555 2.41 LINK CA CA A 304 O HOH A 470 1555 2454 2.34 LINK CA CA A 304 O HOH A 519 1555 1555 2.42 LINK CA CA A 304 O HOH A 531 1555 2454 2.22 LINK O HOH A 403 CA CA B 304 1555 1555 2.04 LINK OD2 ASP B 95 CA CA B 303 1555 1555 2.34 LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.06 LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 1.98 LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 2.00 LINK OD2 ASP B 130 CA CA B 303 1555 1555 2.54 LINK OE1 GLU B 152 CA CA B 304 1555 1555 2.58 LINK OE2 GLU B 152 CA CA B 304 1555 1555 2.61 LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 2.01 LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.27 LINK OD2 ASP B 223 CA CA B 304 1555 1555 2.65 LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.01 LINK ZN ZN B 301 N04 N8Q B 305 1555 1555 2.12 LINK ZN ZN B 302 S01 N8Q B 305 1555 1555 2.17 LINK CA CA B 303 O HOH B 424 1555 1555 2.60 LINK CA CA B 303 O HOH B 464 1555 1555 2.66 LINK CA CA B 303 O HOH B 561 1555 1555 2.47 LINK CA CA B 304 O HOH B 498 1555 1555 2.43 LINK CA CA B 304 O HOH B 541 1555 1555 2.41 SITE 1 AC1 4 HIS A 120 HIS A 122 HIS A 189 N8Q A 305 SITE 1 AC2 4 ASP A 124 CYS A 208 HIS A 250 N8Q A 305 SITE 1 AC3 6 GLU A 152 ASP A 223 HOH A 544 GLU B 227 SITE 2 AC3 6 HOH B 477 HOH B 527 SITE 1 AC4 6 ASP A 95 ASP A 130 HOH A 427 HOH A 470 SITE 2 AC4 6 HOH A 519 HOH A 531 SITE 1 AC5 12 MET A 67 HIS A 122 GLN A 123 ASP A 124 SITE 2 AC5 12 HIS A 189 ASN A 220 HIS A 250 ZN A 301 SITE 3 AC5 12 ZN A 302 HOH A 490 GLY B 69 PHE B 70 SITE 1 AC6 4 HIS B 120 HIS B 122 HIS B 189 N8Q B 305 SITE 1 AC7 4 ASP B 124 CYS B 208 HIS B 250 N8Q B 305 SITE 1 AC8 5 ASP B 95 ASP B 130 HOH B 424 HOH B 464 SITE 2 AC8 5 HOH B 561 SITE 1 AC9 6 GLU A 227 HOH A 403 GLU B 152 ASP B 223 SITE 2 AC9 6 HOH B 498 HOH B 541 SITE 1 AD1 10 GLY A 69 HIS B 122 GLN B 123 ASP B 124 SITE 2 AD1 10 HIS B 189 CYS B 208 HIS B 250 ZN B 301 SITE 3 AD1 10 ZN B 302 HOH B 479 CRYST1 69.678 73.665 77.501 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012903 0.00000