HEADER MOTOR PROTEIN 25-NOV-19 6TJ4 TITLE P. FALCIPARUM ESSENTIAL LIGHT CHAIN, N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFELC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1017500; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28_BSA4 KEYWDS MOTILITY, GLIDEOSOME, MYOSIN, ESSENTIAL LIGHT CHAIN, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PAZICKY,C.LOEW REVDAT 4 13-NOV-24 6TJ4 1 REMARK REVDAT 3 24-JAN-24 6TJ4 1 REMARK REVDAT 2 28-OCT-20 6TJ4 1 JRNL REVDAT 1 21-OCT-20 6TJ4 0 JRNL AUTH S.PAZICKY,K.DHAMOTHARAN,K.KASZUBA,H.D.T.MERTENS,T.GILBERGER, JRNL AUTH 2 D.SVERGUN,J.KOSINSKI,U.WEININGER,C.LOW JRNL TITL STRUCTURAL ROLE OF ESSENTIAL LIGHT CHAINS IN THE JRNL TITL 2 APICOMPLEXAN GLIDEOSOME. JRNL REF COMMUN BIOL V. 3 568 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 33051581 JRNL DOI 10.1038/S42003-020-01283-8 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0000 - 2.3800 0.99 2985 146 0.1781 0.2087 REMARK 3 2 2.3800 - 2.0800 0.99 2943 136 0.1588 0.1636 REMARK 3 3 2.0800 - 1.8900 0.99 2900 150 0.1618 0.2063 REMARK 3 4 1.8900 - 1.7500 0.99 2912 156 0.1763 0.2113 REMARK 3 5 1.7500 - 1.6500 0.99 2897 133 0.1919 0.2188 REMARK 3 6 1.6500 - 1.5700 0.99 2906 132 0.2306 0.2737 REMARK 3 7 1.5700 - 1.5000 0.98 2818 158 0.2769 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.939 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1159 REMARK 3 ANGLE : 1.161 1559 REMARK 3 CHIRALITY : 0.092 154 REMARK 3 PLANARITY : 0.007 201 REMARK 3 DIHEDRAL : 2.621 564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.3640 26.2042 44.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.4446 REMARK 3 T33: 0.1542 T12: -0.0015 REMARK 3 T13: 0.0108 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.8054 L22: 0.8808 REMARK 3 L33: 2.1623 L12: 0.0609 REMARK 3 L13: 0.4356 L23: 0.0829 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.0454 S13: 0.2399 REMARK 3 S21: 0.0340 S22: 0.0623 S23: -0.0534 REMARK 3 S31: -0.2220 S32: 0.0985 S33: -0.0150 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6TJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, LITHIUM SULFATE, PEG 4000, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.11850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.16900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.16900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.11850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 PRO A 69 REMARK 465 PHE A 70 REMARK 465 LYS A 71 REMARK 465 HIS A 72 REMARK 465 ILE A 73 REMARK 465 ASN A 74 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 68 REMARK 465 PRO B 69 REMARK 465 PHE B 70 REMARK 465 LYS B 71 REMARK 465 HIS B 72 REMARK 465 ILE B 73 REMARK 465 ASN B 74 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 8 CD CE NZ REMARK 480 LYS B 8 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 179 O HOH B 186 2.18 REMARK 500 OH TYR A 66 O HOH A 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 155 O HOH B 195 1655 2.14 REMARK 500 O HOH B 183 O HOH B 184 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 205 DISTANCE = 7.12 ANGSTROMS DBREF 6TJ4 A 1 74 UNP Q8IJM4 Q8IJM4_PLAF7 1 74 DBREF 6TJ4 B 1 74 UNP Q8IJM4 Q8IJM4_PLAF7 1 74 SEQADV 6TJ4 SER A 0 UNP Q8IJM4 EXPRESSION TAG SEQADV 6TJ4 SER B 0 UNP Q8IJM4 EXPRESSION TAG SEQRES 1 A 75 SER MET ALA SER ASP MET GLU GLU LYS PHE ARG GLU ALA SEQRES 2 A 75 PHE ILE LEU PHE SER SER CYS SER ASP HIS ILE GLU MET SEQRES 3 A 75 TYR LYS PHE PHE GLU LEU MET ASN SER PHE GLY ILE ILE SEQRES 4 A 75 LEU THR ASN ASP GLU LYS ALA ALA LEU PRO ASN ASP ILE SEQRES 5 A 75 ASN MET ASP TYR TRP LEU ASN PHE ALA LYS LYS HIS TYR SEQRES 6 A 75 ASN TYR GLU GLN PRO PHE LYS HIS ILE ASN SEQRES 1 B 75 SER MET ALA SER ASP MET GLU GLU LYS PHE ARG GLU ALA SEQRES 2 B 75 PHE ILE LEU PHE SER SER CYS SER ASP HIS ILE GLU MET SEQRES 3 B 75 TYR LYS PHE PHE GLU LEU MET ASN SER PHE GLY ILE ILE SEQRES 4 B 75 LEU THR ASN ASP GLU LYS ALA ALA LEU PRO ASN ASP ILE SEQRES 5 B 75 ASN MET ASP TYR TRP LEU ASN PHE ALA LYS LYS HIS TYR SEQRES 6 B 75 ASN TYR GLU GLN PRO PHE LYS HIS ILE ASN FORMUL 3 HOH *193(H2 O) HELIX 1 AA1 MET A 1 SER A 17 1 17 HELIX 2 AA2 GLU A 24 PHE A 35 1 12 HELIX 3 AA3 THR A 40 LEU A 47 1 8 HELIX 4 AA4 ASN A 52 TYR A 64 1 13 HELIX 5 AA5 GLU B 6 SER B 17 1 12 HELIX 6 AA6 GLU B 24 PHE B 35 1 12 HELIX 7 AA7 THR B 40 ALA B 46 1 7 HELIX 8 AA8 MET B 53 TYR B 64 1 12 SHEET 1 AA1 2 HIS B 22 ILE B 23 0 SHEET 2 AA1 2 ILE B 51 ASN B 52 -1 O ILE B 51 N ILE B 23 SSBOND 1 CYS A 19 CYS B 19 1555 2665 2.02 CRYST1 30.237 57.510 86.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011582 0.00000