HEADER FLAVOPROTEIN 26-NOV-19 6TJR TITLE STRUCTURE OF HDRA-LIKE SUBUNIT FROM HYPHOMICROBIUM DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE REDUCTASE/SUCCINATE DEHYDROGENASE FLAVOPROTEIN COMPND 3 DOMAIN PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 53399; SOURCE 4 GENE: HDEN_0691; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DELTA ISCR KEYWDS HETERODISULFIDE REDUCTASE, ELECTRON BIFURCATION, DISSIMILATORY SULFUR KEYWDS 2 OXIDATION, FAD, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KAYASTHA,U.ERMLER,C.DAHL REVDAT 3 15-MAY-24 6TJR 1 REMARK REVDAT 2 10-MAR-21 6TJR 1 JRNL REVDAT 1 19-AUG-20 6TJR 0 JRNL AUTH C.ERNST,K.KAYASTHA,T.KOCH,S.S.VENCESLAU,I.A.C.PEREIRA, JRNL AUTH 2 U.DEMMER,U.ERMLER,C.DAHL JRNL TITL STRUCTURAL AND SPECTROSCOPIC CHARACTERIZATION OF A HDRA-LIKE JRNL TITL 2 SUBUNIT FROM HYPHOMICROBIUM DENITRIFICANS. JRNL REF FEBS J. V. 288 1664 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32750208 JRNL DOI 10.1111/FEBS.15505 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 138112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 6799 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 7241 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2990 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6892 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.82 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 349 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12460 REMARK 3 B22 (A**2) : 0.12460 REMARK 3 B33 (A**2) : -0.24930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.056 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.055 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.054 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.054 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5663 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7753 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1982 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 108 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 899 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5663 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 742 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7335 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 26.7749 43.3761 34.0042 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: -0.0333 REMARK 3 T33: -0.0514 T12: 0.0100 REMARK 3 T13: -0.0066 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.3823 L22: 0.8315 REMARK 3 L33: 0.3433 L12: 0.0294 REMARK 3 L13: -0.0425 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0544 S13: 0.0545 REMARK 3 S21: 0.1056 S22: 0.0222 S23: -0.0100 REMARK 3 S31: -0.0456 S32: -0.0115 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 43.0713 27.3431 20.5005 REMARK 3 T TENSOR REMARK 3 T11: -0.0560 T22: -0.0588 REMARK 3 T33: -0.0400 T12: 0.0334 REMARK 3 T13: 0.0394 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.5086 L22: 1.0805 REMARK 3 L33: 0.4426 L12: -0.0031 REMARK 3 L13: -0.0706 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.0448 S13: -0.0182 REMARK 3 S21: -0.1569 S22: -0.0778 S23: -0.2641 REMARK 3 S31: 0.0270 S32: 0.0676 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 31.4376 31.8927 27.2383 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: -0.0078 REMARK 3 T33: -0.0335 T12: 0.0076 REMARK 3 T13: -0.0091 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.7708 L22: 1.1816 REMARK 3 L33: 0.1445 L12: 0.2167 REMARK 3 L13: 0.2977 L23: -0.4166 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.0128 S13: 0.0704 REMARK 3 S21: -0.0830 S22: 0.0043 S23: -0.1398 REMARK 3 S31: -0.0353 S32: 0.0417 S33: -0.0826 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10050 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: YELLOW-BROWNISH IN COLOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 0.1M, PEP 629 25% (W/V), PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.36667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.68333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 342 REMARK 465 ILE A 343 REMARK 465 PRO A 344 REMARK 465 ARG A 345 REMARK 465 GLU A 346 REMARK 465 ALA A 347 REMARK 465 ALA A 348 REMARK 465 GLU A 349 REMARK 465 MET B 1 REMARK 465 SER B 342 REMARK 465 ILE B 343 REMARK 465 PRO B 344 REMARK 465 ARG B 345 REMARK 465 GLU B 346 REMARK 465 ALA B 347 REMARK 465 ALA B 348 REMARK 465 GLU B 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 -124.21 -92.11 REMARK 500 ALA A 46 -122.73 -92.11 REMARK 500 ASN A 89 50.76 -154.98 REMARK 500 LYS A 178 -45.09 70.31 REMARK 500 ARG A 208 52.90 -118.94 REMARK 500 TYR A 217 -52.68 -123.28 REMARK 500 THR A 251 -126.58 86.64 REMARK 500 VAL A 253 -147.74 -90.13 REMARK 500 ALA B 46 -122.94 -91.49 REMARK 500 ASN B 89 50.33 -155.21 REMARK 500 LYS B 178 -44.06 68.92 REMARK 500 ARG B 208 53.69 -119.94 REMARK 500 TYR B 217 -52.65 -123.69 REMARK 500 LEU B 252 -47.07 135.76 REMARK 500 LYS B 254 88.78 -50.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 831 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 832 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 833 DISTANCE = 6.73 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 163 SG REMARK 620 2 SF4 A 401 S1 102.2 REMARK 620 3 SF4 A 401 S2 116.8 107.7 REMARK 620 4 SF4 A 401 S4 120.8 104.9 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 SF4 A 401 S1 125.8 REMARK 620 3 SF4 A 401 S3 102.5 103.8 REMARK 620 4 SF4 A 401 S4 110.5 104.9 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 180 SG REMARK 620 2 SF4 A 401 S2 110.5 REMARK 620 3 SF4 A 401 S3 115.5 106.0 REMARK 620 4 SF4 A 401 S4 111.8 103.8 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 181 SG REMARK 620 2 SF4 A 401 S1 113.3 REMARK 620 3 SF4 A 401 S2 111.3 106.6 REMARK 620 4 SF4 A 401 S3 116.7 103.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 163 SG REMARK 620 2 SF4 B 401 S1 120.8 REMARK 620 3 SF4 B 401 S2 103.6 104.8 REMARK 620 4 SF4 B 401 S4 115.6 103.8 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 SF4 B 401 S1 111.1 REMARK 620 3 SF4 B 401 S2 125.0 104.8 REMARK 620 4 SF4 B 401 S3 102.6 108.5 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 180 SG REMARK 620 2 SF4 B 401 S1 112.7 REMARK 620 3 SF4 B 401 S3 115.3 108.1 REMARK 620 4 SF4 B 401 S4 110.9 104.0 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 181 SG REMARK 620 2 SF4 B 401 S2 113.3 REMARK 620 3 SF4 B 401 S3 116.8 103.7 REMARK 620 4 SF4 B 401 S4 110.2 106.7 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 404 DBREF 6TJR A 1 349 UNP D8JT26 D8JT26_HYPDA 1 349 DBREF 6TJR B 1 349 UNP D8JT26 D8JT26_HYPDA 1 349 SEQRES 1 A 349 MET LYS PRO ILE LEU VAL VAL GLY GLY GLY PRO ALA GLY SEQRES 2 A 349 LEU ALA ALA THR HIS ALA LEU ALA ASN VAL GLY GLN PRO SEQRES 3 A 349 SER VAL LEU VAL GLU LYS ARG ASP ARG LEU GLY GLY ALA SEQRES 4 A 349 PRO ILE PHE SER GLY TYR ALA LYS LEU VAL PRO SER GLY SEQRES 5 A 349 ARG TRP ALA ASN GLU ALA ILE GLY GLY MET VAL SER ARG SEQRES 6 A 349 ILE GLU THR ASP SER LEU ILE SER ILE LYS THR ASN THR SEQRES 7 A 349 THR VAL VAL SER PHE ASP GLY ASP PRO ASN ASN PHE THR SEQRES 8 A 349 ALA LYS LEU SER ASP GLY THR SER ILE ASP CYS ALA SER SEQRES 9 A 349 ALA ILE LEU THR THR GLY PHE SER HIS PHE ASP SER VAL SEQRES 10 A 349 ASN LYS PRO GLU TRP GLY PHE GLY MET PHE PRO ASP VAL SEQRES 11 A 349 VAL THR THR THR GLN VAL GLU GLN MET ILE SER SER GLY SEQRES 12 A 349 LYS GLY VAL ARG CYS LEU SER ASP GLY ARG LYS PRO LYS SEQRES 13 A 349 ARG VAL ALA ILE LEU LEU CYS VAL GLY SER ARG ASP ARG SEQRES 14 A 349 GLN ILE GLY ARG GLU TRP CYS SER LYS ILE CYS CYS THR SEQRES 15 A 349 VAL SER ALA ASN LEU ALA MET GLU ILE ARG GLU GLU LEU SEQRES 16 A 349 PRO ASP CYS HIS VAL TYR ILE TYR TYR MET ASP ILE ARG SEQRES 17 A 349 THR PHE GLY HIS TYR GLU SER ASP TYR TYR TRP ARG SER SEQRES 18 A 349 GLN GLU GLU PHE LYS VAL LYS TYR ILE LYS ALA ARG ILE SEQRES 19 A 349 ALA GLU VAL THR SER ASP GLY LYS GLN LEU ILE VAL LYS SEQRES 20 A 349 GLY GLU ASP THR LEU VAL LYS ARG PRO ILE THR ILE PRO SEQRES 21 A 349 PHE ASP MET VAL VAL HIS ALA ILE GLY MET ASP PRO ASN SEQRES 22 A 349 VAL ASP ASN MET THR ILE SER ALA ILE PHE GLY VAL GLU SEQRES 23 A 349 LEU HIS LYS HIS GLY TYR ILE ALA ARG LYS ASP THR TYR SEQRES 24 A 349 GLY LEU MET GLY ALA THR SER ARG PRO GLY VAL PHE VAL SEQRES 25 A 349 ALA GLY SER ALA ILE GLY PRO GLU THR ILE ASP ASP SER SEQRES 26 A 349 ILE ALA GLN ALA ASN ALA ALA ALA MET SER ALA LEU SER SEQRES 27 A 349 LEU GLY ARG SER ILE PRO ARG GLU ALA ALA GLU SEQRES 1 B 349 MET LYS PRO ILE LEU VAL VAL GLY GLY GLY PRO ALA GLY SEQRES 2 B 349 LEU ALA ALA THR HIS ALA LEU ALA ASN VAL GLY GLN PRO SEQRES 3 B 349 SER VAL LEU VAL GLU LYS ARG ASP ARG LEU GLY GLY ALA SEQRES 4 B 349 PRO ILE PHE SER GLY TYR ALA LYS LEU VAL PRO SER GLY SEQRES 5 B 349 ARG TRP ALA ASN GLU ALA ILE GLY GLY MET VAL SER ARG SEQRES 6 B 349 ILE GLU THR ASP SER LEU ILE SER ILE LYS THR ASN THR SEQRES 7 B 349 THR VAL VAL SER PHE ASP GLY ASP PRO ASN ASN PHE THR SEQRES 8 B 349 ALA LYS LEU SER ASP GLY THR SER ILE ASP CYS ALA SER SEQRES 9 B 349 ALA ILE LEU THR THR GLY PHE SER HIS PHE ASP SER VAL SEQRES 10 B 349 ASN LYS PRO GLU TRP GLY PHE GLY MET PHE PRO ASP VAL SEQRES 11 B 349 VAL THR THR THR GLN VAL GLU GLN MET ILE SER SER GLY SEQRES 12 B 349 LYS GLY VAL ARG CYS LEU SER ASP GLY ARG LYS PRO LYS SEQRES 13 B 349 ARG VAL ALA ILE LEU LEU CYS VAL GLY SER ARG ASP ARG SEQRES 14 B 349 GLN ILE GLY ARG GLU TRP CYS SER LYS ILE CYS CYS THR SEQRES 15 B 349 VAL SER ALA ASN LEU ALA MET GLU ILE ARG GLU GLU LEU SEQRES 16 B 349 PRO ASP CYS HIS VAL TYR ILE TYR TYR MET ASP ILE ARG SEQRES 17 B 349 THR PHE GLY HIS TYR GLU SER ASP TYR TYR TRP ARG SER SEQRES 18 B 349 GLN GLU GLU PHE LYS VAL LYS TYR ILE LYS ALA ARG ILE SEQRES 19 B 349 ALA GLU VAL THR SER ASP GLY LYS GLN LEU ILE VAL LYS SEQRES 20 B 349 GLY GLU ASP THR LEU VAL LYS ARG PRO ILE THR ILE PRO SEQRES 21 B 349 PHE ASP MET VAL VAL HIS ALA ILE GLY MET ASP PRO ASN SEQRES 22 B 349 VAL ASP ASN MET THR ILE SER ALA ILE PHE GLY VAL GLU SEQRES 23 B 349 LEU HIS LYS HIS GLY TYR ILE ALA ARG LYS ASP THR TYR SEQRES 24 B 349 GLY LEU MET GLY ALA THR SER ARG PRO GLY VAL PHE VAL SEQRES 25 B 349 ALA GLY SER ALA ILE GLY PRO GLU THR ILE ASP ASP SER SEQRES 26 B 349 ILE ALA GLN ALA ASN ALA ALA ALA MET SER ALA LEU SER SEQRES 27 B 349 LEU GLY ARG SER ILE PRO ARG GLU ALA ALA GLU HET SF4 A 401 8 HET FAD A 402 53 HET MES A 403 12 HET MES A 404 12 HET MES A 405 12 HET SF4 B 401 8 HET FAD B 402 53 HET MES B 403 12 HET MES B 404 12 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 SF4 2(FE4 S4) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 MES 5(C6 H13 N O4 S) FORMUL 12 HOH *598(H2 O) HELIX 1 AA1 GLY A 10 ASN A 22 1 13 HELIX 2 AA2 GLY A 37 SER A 43 1 7 HELIX 3 AA3 TRP A 54 THR A 68 1 15 HELIX 4 AA4 ASP A 115 GLY A 123 5 9 HELIX 5 AA5 THR A 133 SER A 142 1 10 HELIX 6 AA6 ASP A 168 GLY A 172 5 5 HELIX 7 AA7 ILE A 179 LEU A 195 1 17 HELIX 8 AA8 HIS A 212 TYR A 217 1 6 HELIX 9 AA9 TYR A 217 GLU A 224 1 8 HELIX 10 AB1 ASP A 275 GLY A 284 1 10 HELIX 11 AB2 GLY A 314 ILE A 317 5 4 HELIX 12 AB3 THR A 321 SER A 338 1 18 HELIX 13 AB4 LEU A 339 ARG A 341 5 3 HELIX 14 AB5 GLY B 10 ASN B 22 1 13 HELIX 15 AB6 GLY B 37 SER B 43 1 7 HELIX 16 AB7 TRP B 54 THR B 68 1 15 HELIX 17 AB8 ASP B 115 GLY B 123 5 9 HELIX 18 AB9 THR B 133 SER B 142 1 10 HELIX 19 AC1 ASP B 168 GLY B 172 5 5 HELIX 20 AC2 ILE B 179 LEU B 195 1 17 HELIX 21 AC3 HIS B 212 TYR B 217 1 6 HELIX 22 AC4 TYR B 217 GLU B 224 1 8 HELIX 23 AC5 ASP B 275 GLY B 284 1 10 HELIX 24 AC6 GLY B 314 ILE B 317 5 4 HELIX 25 AC7 THR B 321 SER B 338 1 18 HELIX 26 AC8 LEU B 339 ARG B 341 5 3 SHEET 1 AA1 5 ILE A 72 LYS A 75 0 SHEET 2 AA1 5 SER A 27 VAL A 30 1 N LEU A 29 O LYS A 75 SHEET 3 AA1 5 ILE A 4 VAL A 7 1 N VAL A 6 O VAL A 28 SHEET 4 AA1 5 ALA A 105 LEU A 107 1 O ILE A 106 N LEU A 5 SHEET 5 AA1 5 VAL A 310 VAL A 312 1 O PHE A 311 N LEU A 107 SHEET 1 AA2 3 VAL A 80 ASP A 86 0 SHEET 2 AA2 3 ASN A 89 LEU A 94 -1 O LYS A 93 N VAL A 81 SHEET 3 AA2 3 SER A 99 CYS A 102 -1 O ILE A 100 N ALA A 92 SHEET 1 AA3 2 PHE A 111 HIS A 113 0 SHEET 2 AA3 2 MET A 270 PRO A 272 -1 O ASP A 271 N SER A 112 SHEET 1 AA4 7 VAL A 130 THR A 132 0 SHEET 2 AA4 7 MET A 263 ILE A 268 1 O VAL A 264 N VAL A 131 SHEET 3 AA4 7 ARG A 157 VAL A 164 1 N ALA A 159 O VAL A 265 SHEET 4 AA4 7 HIS A 199 TYR A 204 1 O HIS A 199 N VAL A 158 SHEET 5 AA4 7 LYS A 228 SER A 239 1 O ILE A 230 N ILE A 202 SHEET 6 AA4 7 LEU A 244 ASP A 250 -1 O ILE A 245 N THR A 238 SHEET 7 AA4 7 ARG A 255 PHE A 261 -1 O ARG A 255 N ASP A 250 SHEET 1 AA5 5 ILE B 72 LYS B 75 0 SHEET 2 AA5 5 SER B 27 VAL B 30 1 N LEU B 29 O LYS B 75 SHEET 3 AA5 5 ILE B 4 VAL B 7 1 N VAL B 6 O VAL B 28 SHEET 4 AA5 5 SER B 104 LEU B 107 1 O ILE B 106 N LEU B 5 SHEET 5 AA5 5 VAL B 310 VAL B 312 1 O PHE B 311 N LEU B 107 SHEET 1 AA6 3 VAL B 80 ASP B 86 0 SHEET 2 AA6 3 ASN B 89 LEU B 94 -1 O THR B 91 N ASP B 84 SHEET 3 AA6 3 SER B 99 CYS B 102 -1 O ILE B 100 N ALA B 92 SHEET 1 AA7 2 PHE B 111 HIS B 113 0 SHEET 2 AA7 2 MET B 270 PRO B 272 -1 O ASP B 271 N SER B 112 SHEET 1 AA8 7 VAL B 130 THR B 132 0 SHEET 2 AA8 7 MET B 263 ILE B 268 1 O VAL B 264 N VAL B 131 SHEET 3 AA8 7 ARG B 157 VAL B 164 1 N ALA B 159 O VAL B 265 SHEET 4 AA8 7 HIS B 199 TYR B 204 1 O HIS B 199 N VAL B 158 SHEET 5 AA8 7 LYS B 228 SER B 239 1 O ILE B 230 N ILE B 202 SHEET 6 AA8 7 LEU B 244 ASP B 250 -1 O LYS B 247 N GLU B 236 SHEET 7 AA8 7 ARG B 255 PHE B 261 -1 O PHE B 261 N LEU B 244 LINK SG CYS A 163 FE3 SF4 A 401 1555 1555 2.27 LINK SG CYS A 176 FE2 SF4 A 401 1555 1555 2.35 LINK SG CYS A 180 FE1 SF4 A 401 1555 1555 2.33 LINK SG CYS A 181 FE4 SF4 A 401 1555 1555 2.31 LINK SG CYS B 163 FE3 SF4 B 401 1555 1555 2.27 LINK SG CYS B 176 FE4 SF4 B 401 1555 1555 2.35 LINK SG CYS B 180 FE2 SF4 B 401 1555 1555 2.31 LINK SG CYS B 181 FE1 SF4 B 401 1555 1555 2.31 CISPEP 1 VAL A 49 PRO A 50 0 3.79 CISPEP 2 VAL B 49 PRO B 50 0 4.81 SITE 1 AC1 10 LEU A 162 CYS A 163 SER A 166 ARG A 167 SITE 2 AC1 10 CYS A 176 SER A 177 LYS A 178 CYS A 180 SITE 3 AC1 10 CYS A 181 ARG A 208 SITE 1 AC2 36 GLY A 8 GLY A 10 PRO A 11 ALA A 12 SITE 2 AC2 36 GLU A 31 LYS A 32 ARG A 33 GLY A 38 SITE 3 AC2 36 ALA A 39 PRO A 40 TYR A 45 LEU A 48 SITE 4 AC2 36 VAL A 49 THR A 108 THR A 109 GLY A 110 SITE 5 AC2 36 PHE A 111 THR A 133 GLU A 137 VAL A 183 SITE 6 AC2 36 ASN A 273 ASP A 275 SER A 315 GLU A 320 SITE 7 AC2 36 THR A 321 ILE A 322 HOH A 508 HOH A 512 SITE 8 AC2 36 HOH A 519 HOH A 524 HOH A 598 HOH A 623 SITE 9 AC2 36 HOH A 642 HOH A 652 HOH A 682 HOH A 741 SITE 1 AC3 11 TRP A 54 ASN A 56 ILE A 140 SER A 141 SITE 2 AC3 11 GLY A 143 TRP B 54 ASN B 56 GLU B 57 SITE 3 AC3 11 ILE B 140 SER B 141 GLY B 143 SITE 1 AC4 6 PHE A 42 SER A 43 HIS A 113 THR A 134 SITE 2 AC4 6 GLN A 138 HOH A 509 SITE 1 AC5 6 ARG A 53 SER B 64 GLU B 67 GLY B 300 SITE 2 AC5 6 HOH B 563 HOH B 583 SITE 1 AC6 10 LEU B 162 CYS B 163 SER B 166 ARG B 167 SITE 2 AC6 10 CYS B 176 SER B 177 LYS B 178 CYS B 180 SITE 3 AC6 10 CYS B 181 ARG B 208 SITE 1 AC7 35 GLY B 8 GLY B 10 PRO B 11 ALA B 12 SITE 2 AC7 35 GLU B 31 LYS B 32 ARG B 33 GLY B 38 SITE 3 AC7 35 ALA B 39 PRO B 40 TYR B 45 LEU B 48 SITE 4 AC7 35 VAL B 49 THR B 108 THR B 109 GLY B 110 SITE 5 AC7 35 PHE B 111 HIS B 113 THR B 133 GLU B 137 SITE 6 AC7 35 VAL B 183 ASN B 273 ASP B 275 SER B 315 SITE 7 AC7 35 GLU B 320 THR B 321 ILE B 322 HOH B 505 SITE 8 AC7 35 HOH B 509 HOH B 510 HOH B 513 HOH B 586 SITE 9 AC7 35 HOH B 591 HOH B 601 HOH B 653 SITE 1 AC8 7 ARG A 35 SER A 64 GLU A 67 GLY A 300 SITE 2 AC8 7 HOH A 579 HOH A 588 ARG B 53 SITE 1 AC9 5 PHE B 42 SER B 43 HIS B 113 GLN B 138 SITE 2 AC9 5 HOH B 523 CRYST1 145.620 145.620 64.100 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006867 0.003965 0.000000 0.00000 SCALE2 0.000000 0.007930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015601 0.00000