HEADER MEMBRANE PROTEIN 28-NOV-19 6TK7 TITLE FEMTOSECOND TO MILLISECOND STRUCTURAL CHANGES IN A LIGHT-DRIVEN SODIUM TITLE 2 PUMP: DARK STRUCTURE IN ACIDIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM PUMPING RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DOKDONIA EIKASTA; SOURCE 3 ORGANISM_TAXID: 308116; SOURCE 4 GENE: NAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SODIUM PUMPING RHODOPSIN, TIME-RESOLVED, SERIAL FEMTOSECOND KEYWDS 2 CRYSTALLOGRAPY, ROOM-TEMPERATURE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SKOPINTSEV,D.EHRENBERG,T.WEINERT,D.JAMES,R.KAR,P.JOHNSON,D.OZEROV, AUTHOR 2 A.FURRER,I.MARTIEL,F.DWORKOWSKI,K.NASS,G.KNOPP,C.CIRELLI,D.GASHI, AUTHOR 3 S.MOUS,M.WRANIK,T.GRUHL,D.KEKILLI,S.BRUENLE,X.DEUPI,G.F.X.SCHERTLER, AUTHOR 4 R.BENOIT,V.PANNEELS,P.NOGLY,I.SCHAPIRO,C.MILNE,J.HEBERLE,J.STANDFUSS REVDAT 4 24-JAN-24 6TK7 1 REMARK REVDAT 3 22-JUL-20 6TK7 1 JRNL REVDAT 2 17-JUN-20 6TK7 1 JRNL REVDAT 1 27-MAY-20 6TK7 0 JRNL AUTH P.SKOPINTSEV,D.EHRENBERG,T.WEINERT,D.JAMES,R.K.KAR, JRNL AUTH 2 P.J.M.JOHNSON,D.OZEROV,A.FURRER,I.MARTIEL,F.DWORKOWSKI, JRNL AUTH 3 K.NASS,G.KNOPP,C.CIRELLI,C.ARRELL,D.GASHI,S.MOUS,M.WRANIK, JRNL AUTH 4 T.GRUHL,D.KEKILLI,S.BRUNLE,X.DEUPI,G.F.X.SCHERTLER, JRNL AUTH 5 R.M.BENOIT,V.PANNEELS,P.NOGLY,I.SCHAPIRO,C.MILNE,J.HEBERLE, JRNL AUTH 6 J.STANDFUSS JRNL TITL FEMTOSECOND-TO-MILLISECOND STRUCTURAL CHANGES IN A JRNL TITL 2 LIGHT-DRIVEN SODIUM PUMP. JRNL REF NATURE V. 583 314 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32499654 JRNL DOI 10.1038/S41586-020-2307-8 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 52.3 REMARK 3 NUMBER OF REFLECTIONS : 28895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.3570 - 3.8209 1.00 3890 271 0.1560 0.1978 REMARK 3 2 3.8209 - 3.0477 1.00 3777 262 0.1516 0.1858 REMARK 3 3 3.0477 - 2.6669 1.00 3723 259 0.1757 0.2083 REMARK 3 4 2.6669 - 2.4251 1.00 3682 256 0.1932 0.2135 REMARK 3 5 2.4251 - 2.2524 0.95 3497 248 0.2108 0.2684 REMARK 3 6 2.2524 - 2.1203 0.74 2723 192 0.2262 0.2479 REMARK 3 7 2.1203 - 2.0146 0.54 1972 143 0.2414 0.2421 REMARK 3 8 2.0146 - 1.9272 0.36 1334 86 0.2616 0.3151 REMARK 3 9 1.9272 - 1.8533 0.25 907 61 0.2725 0.3028 REMARK 3 10 1.8533 - 1.7895 0.15 563 38 0.2730 0.2899 REMARK 3 11 1.7895 - 1.7337 0.11 382 31 0.3146 0.3622 REMARK 3 12 1.7337 - 1.6843 0.07 265 19 0.3357 0.4553 REMARK 3 13 1.6843 - 1.6400 0.05 179 12 0.3282 0.3532 REMARK 3 14 1.6400 - 1.6001 0.03 109 14 0.3344 0.3984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : ESA REMARK 200 X-RAY GENERATOR MODEL : SWISSFEL ARAMIS BEAMLINE ESA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.8.0 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.8.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 12.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 52.3 REMARK 200 DATA REDUNDANCY : 505.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 27.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3X3C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE PH 4.4, 150 MM REMARK 280 MGCL2, 35% PEG 200, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.24000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.78000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.77000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.24000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.78000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.77000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.24000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.78000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.77000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.24000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 491 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 273 REMARK 465 GLU A 274 REMARK 465 LEU A 275 REMARK 465 GLU A 276 REMARK 465 ASN A 277 REMARK 465 LEU A 278 REMARK 465 TYR A 279 REMARK 465 PHE A 280 REMARK 465 GLN A 281 REMARK 465 SER A 282 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 VAL A 230 CG1 CG2 REMARK 470 ASN A 272 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 453 O HOH A 455 2.02 REMARK 500 O HOH A 455 O HOH A 497 2.03 REMARK 500 OG SER A 21 OE2 GLU A 237 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -80.94 -103.56 REMARK 500 LEU A 103 158.09 75.68 REMARK 500 THR A 131 -77.55 -117.48 REMARK 500 ASN A 163 79.21 -151.24 REMARK 500 ASP A 231 48.27 -156.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 452 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 451 DISTANCE = 8.37 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA A 314 REMARK 610 LFA A 315 REMARK 610 LFA A 316 REMARK 610 LFA A 317 REMARK 610 LFA A 318 REMARK 610 LFA A 319 REMARK 610 LFA A 320 REMARK 610 LFA A 321 REMARK 610 LFA A 322 REMARK 610 LFA A 323 REMARK 610 LFA A 324 REMARK 610 LFA A 325 REMARK 610 LFA A 326 REMARK 610 LFA A 327 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 327 DBREF 6TK7 A 1 275 UNP N0DKS8 N0DKS8_9FLAO 1 275 SEQADV 6TK7 GLU A 276 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 ASN A 277 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 LEU A 278 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 TYR A 279 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 PHE A 280 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 GLN A 281 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 SER A 282 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 GLY A 283 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 SER A 284 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 285 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 286 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 287 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 288 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 289 UNP N0DKS8 EXPRESSION TAG SEQADV 6TK7 HIS A 290 UNP N0DKS8 EXPRESSION TAG SEQRES 1 A 290 MET THR GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE SEQRES 2 A 290 ILE GLY ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN SEQRES 3 A 290 PHE THR SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET SEQRES 4 A 290 LEU ALA GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN SEQRES 5 A 290 VAL ASP LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA SEQRES 6 A 290 VAL VAL MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN SEQRES 7 A 290 ALA GLN ASN TRP THR SER SER PHE THR PHE ASN GLU GLU SEQRES 8 A 290 VAL GLY ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE SEQRES 9 A 290 ASN ASN GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL SEQRES 10 A 290 PRO MET LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU SEQRES 11 A 290 THR THR SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP SEQRES 12 A 290 PHE SER GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY SEQRES 13 A 290 GLN PHE TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL SEQRES 14 A 290 TRP GLY ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU SEQRES 15 A 290 TRP VAL MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY SEQRES 16 A 290 ILE SER PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP SEQRES 17 A 290 ILE LEU PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA SEQRES 18 A 290 TYR LEU MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU SEQRES 19 A 290 TYR SER GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR SEQRES 20 A 290 THR ILE ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL SEQRES 21 A 290 LEU LEU GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS SEQRES 22 A 290 GLU LEU GLU ASN LEU TYR PHE GLN SER GLY SER HIS HIS SEQRES 23 A 290 HIS HIS HIS HIS HET RET A 301 20 HET LFA A 302 16 HET LFA A 303 8 HET LFA A 304 6 HET LFA A 305 6 HET LFA A 306 5 HET LFA A 307 13 HET LFA A 308 10 HET LFA A 309 8 HET LFA A 310 8 HET LFA A 311 12 HET LFA A 312 16 HET LFA A 313 5 HET LFA A 314 10 HET LFA A 315 5 HET LFA A 316 11 HET LFA A 317 9 HET LFA A 318 9 HET LFA A 319 6 HET LFA A 320 5 HET LFA A 321 4 HET LFA A 322 6 HET LFA A 323 10 HET LFA A 324 3 HET LFA A 325 9 HET LFA A 326 10 HET LFA A 327 12 HETNAM RET RETINAL HETNAM LFA EICOSANE HETSYN LFA LIPID FRAGMENT FORMUL 2 RET C20 H28 O FORMUL 3 LFA 26(C20 H42) FORMUL 29 HOH *99(H2 O) HELIX 1 AA1 ASN A 9 THR A 17 1 9 HELIX 2 AA2 SER A 21 THR A 49 1 29 HELIX 3 AA3 ILE A 50 VAL A 53 5 4 HELIX 4 AA4 ASP A 54 LYS A 56 5 3 HELIX 5 AA5 PHE A 57 SER A 85 1 29 HELIX 6 AA6 ASN A 106 ILE A 124 1 19 HELIX 7 AA7 LEU A 125 VAL A 127 5 3 HELIX 8 AA8 LYS A 134 TYR A 159 1 26 HELIX 9 AA9 ASN A 163 GLU A 194 1 32 HELIX 10 AB1 SER A 197 MET A 224 1 28 HELIX 11 AB2 PRO A 225 LEU A 227 5 3 HELIX 12 AB3 SER A 236 SER A 270 1 35 SHEET 1 AA1 2 PHE A 86 ASN A 89 0 SHEET 2 AA1 2 ARG A 94 LEU A 97 -1 O ARG A 94 N ASN A 89 LINK NZ LYS A 255 C15 RET A 301 1555 1555 1.40 SITE 1 AC1 9 TRP A 113 LEU A 120 MET A 149 GLY A 171 SITE 2 AC1 9 SER A 174 TYR A 218 TYR A 222 SER A 254 SITE 3 AC1 9 LYS A 255 SITE 1 AC2 5 TYR A 45 ASN A 264 LFA A 306 LFA A 312 SITE 2 AC2 5 LFA A 316 SITE 1 AC3 1 VAL A 169 SITE 1 AC4 2 VAL A 252 LFA A 312 SITE 1 AC5 2 LFA A 302 LFA A 316 SITE 1 AC6 3 ASN A 105 GLY A 107 TYR A 154 SITE 1 AC7 2 TYR A 45 LFA A 316 SITE 1 AC8 2 TYR A 226 VAL A 230 SITE 1 AC9 2 ASN A 140 PHE A 144 SITE 1 AD1 1 LFA A 322 SITE 1 AD2 6 LEU A 261 ASN A 264 LFA A 302 LFA A 305 SITE 2 AD2 6 LFA A 323 HOH A 428 SITE 1 AD3 2 ALA A 172 SER A 175 SITE 1 AD4 2 PHE A 179 LEU A 227 SITE 1 AD5 3 LFA A 302 LFA A 306 LFA A 308 SITE 1 AD6 1 MET A 148 SITE 1 AD7 4 MET A 59 PHE A 126 LFA A 320 LFA A 326 SITE 1 AD8 1 ALA A 176 SITE 1 AD9 4 MET A 59 LFA A 318 LFA A 324 LFA A 326 SITE 1 AE1 1 HIS A 30 SITE 1 AE2 1 LFA A 311 SITE 1 AE3 1 LFA A 312 SITE 1 AE4 1 LFA A 320 SITE 1 AE5 4 ILE A 115 MET A 119 LFA A 318 LFA A 320 SITE 1 AE6 1 SER A 70 CRYST1 41.540 84.480 235.560 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004245 0.00000