HEADER ANTIBIOTIC 04-DEC-19 6TMB TITLE VIM-2_1DI-TRIAZOLE INHIBITORS WITH PROMISING INHIBITOR EFFECTS AGAINST TITLE 2 ANTIBIOTIC RESISTANCE METALLO-BETA-LACTAMASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAVIM-2,CLASS B CARBAPENEMASE VIM-2,METALLO BETA-LACTAMASE, COMPND 5 METALLO-BETA LACTAMASE PROTEIN,METALLO-BETA-LACTAMASE VIM-2,VIM-2, COMPND 6 VIM-2 BETA-LACTAMASE,VIM-2 CLASS B METALLO B-LACTAMASE,VIM-2 TYPE COMPND 7 METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, NH-TRIAZOLE, INHIBITION PROPERTIES, KEYWDS 2 CRYSTAL STRUCTURE., ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR H.-K.S.LEIROS,T.CHRISTOPEIT REVDAT 3 24-JAN-24 6TMB 1 REMARK REVDAT 2 10-FEB-21 6TMB 1 JRNL REVDAT 1 02-SEP-20 6TMB 0 JRNL AUTH Z.MUHAMMAD,S.SKAGSETH,M.BOOMGAREN,S.AKHTER,C.FROHLICH, JRNL AUTH 2 A.ISMAEL,T.CHRISTOPEIT,A.BAYER,H.S.LEIROS JRNL TITL STRUCTURAL STUDIES OF TRIAZOLE INHIBITORS WITH PROMISING JRNL TITL 2 INHIBITOR EFFECTS AGAINST ANTIBIOTIC RESISTANCE JRNL TITL 3 METALLO-BETA-LACTAMASES. JRNL REF BIOORG.MED.CHEM. V. 28 15598 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 32631568 JRNL DOI 10.1016/J.BMC.2020.115598 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 61683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6000 - 4.2000 0.90 2586 122 0.1458 0.1548 REMARK 3 2 4.2000 - 3.3400 0.91 2562 140 0.1157 0.1392 REMARK 3 3 3.3300 - 2.9100 0.93 2581 161 0.1243 0.1385 REMARK 3 4 2.9100 - 2.6500 0.95 2636 140 0.1308 0.1776 REMARK 3 5 2.6500 - 2.4600 0.93 2580 138 0.1281 0.1681 REMARK 3 6 2.4600 - 2.3100 0.94 2645 110 0.1291 0.1660 REMARK 3 7 2.3100 - 2.2000 0.94 2605 150 0.1321 0.1742 REMARK 3 8 2.2000 - 2.1000 0.96 2685 130 0.1294 0.1515 REMARK 3 9 2.1000 - 2.0200 0.96 2685 127 0.1320 0.1666 REMARK 3 10 2.0200 - 1.9500 0.96 2676 130 0.1372 0.1735 REMARK 3 11 1.9500 - 1.8900 0.96 2635 145 0.1463 0.1813 REMARK 3 12 1.8900 - 1.8400 0.97 2653 155 0.1466 0.1790 REMARK 3 13 1.8400 - 1.7900 0.97 2699 147 0.1518 0.1993 REMARK 3 14 1.7900 - 1.7400 0.98 2734 140 0.1534 0.1845 REMARK 3 15 1.7400 - 1.7000 0.98 2689 159 0.1587 0.1899 REMARK 3 16 1.7000 - 1.6700 0.97 2673 142 0.1609 0.1867 REMARK 3 17 1.6700 - 1.6300 0.98 2695 137 0.1661 0.2064 REMARK 3 18 1.6300 - 1.6000 0.98 2708 151 0.1666 0.1828 REMARK 3 19 1.6000 - 1.5800 0.98 2727 130 0.1809 0.2151 REMARK 3 20 1.5800 - 1.5500 0.98 2692 133 0.1889 0.2180 REMARK 3 21 1.5500 - 1.5200 0.98 2721 140 0.1881 0.2076 REMARK 3 22 1.5200 - 1.5000 0.98 2749 140 0.1995 0.2228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.117 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.591 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3808 REMARK 3 ANGLE : 1.088 5244 REMARK 3 CHIRALITY : 0.066 591 REMARK 3 PLANARITY : 0.008 704 REMARK 3 DIHEDRAL : 20.385 1368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.983998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LSC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27% PEG 3350 AND 0.2 M MAGNESIUM REMARK 280 FORMATE, LIQUID DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.51300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.51300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PHE A 0 REMARK 465 LYS A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 ARG A 296 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 MET B -1 REMARK 465 PHE B 0 REMARK 465 LYS B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 TYR B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 ILE B 14 REMARK 465 MET B 15 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 PRO B 20 REMARK 465 LEU B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 ARG B 296 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 30 HH TYR B 45 1.53 REMARK 500 O HOH B 543 O HOH B 715 1.55 REMARK 500 HD22 ASN B 288 O HOH B 515 1.55 REMARK 500 HG SER B 178 O HOH B 514 1.55 REMARK 500 O HOH B 675 O HOH B 721 1.60 REMARK 500 O HOH A 530 O HOH A 762 1.64 REMARK 500 O HOH A 555 O HOH A 734 1.69 REMARK 500 O HOH A 517 O HOH A 728 1.72 REMARK 500 O HOH A 627 O HOH A 745 1.72 REMARK 500 O HOH B 557 O HOH B 676 1.73 REMARK 500 O HOH A 692 O HOH A 727 1.73 REMARK 500 O ASN B 233 O HOH B 501 1.75 REMARK 500 O HOH A 658 O HOH A 798 1.75 REMARK 500 O HOH B 734 O HOH B 745 1.76 REMARK 500 O HOH A 670 O HOH A 754 1.78 REMARK 500 O HOH A 508 O HOH A 656 1.80 REMARK 500 O ASN A 233 O HOH A 501 1.81 REMARK 500 O HOH B 775 O HOH B 822 1.82 REMARK 500 OE1 GLU A 247 O HOH A 502 1.82 REMARK 500 O HOH B 539 O HOH B 696 1.82 REMARK 500 O HOH B 541 O HOH B 734 1.84 REMARK 500 O HOH A 558 O HOH A 597 1.85 REMARK 500 O HOH B 501 O HOH B 550 1.85 REMARK 500 O HOH B 766 O HOH B 787 1.88 REMARK 500 O HOH B 510 O HOH B 571 1.89 REMARK 500 O HOH B 620 O HOH B 719 1.90 REMARK 500 O ASN A 233 O HOH A 501 1.90 REMARK 500 O HOH B 703 O HOH B 775 1.90 REMARK 500 O HOH A 602 O HOH A 762 1.91 REMARK 500 O HOH B 529 O HOH B 763 1.91 REMARK 500 O HOH A 747 O HOH A 757 1.91 REMARK 500 O HOH B 827 O HOH B 828 1.91 REMARK 500 O HOH A 697 O HOH A 716 1.92 REMARK 500 O HOH A 665 O HOH A 758 1.93 REMARK 500 O HOH A 746 O HOH A 783 1.93 REMARK 500 O HOH B 709 O HOH B 716 1.93 REMARK 500 O HOH A 736 O HOH A 798 1.94 REMARK 500 O HOH A 651 O HOH A 715 1.95 REMARK 500 O HOH A 677 O HOH A 768 1.96 REMARK 500 O HOH B 696 O HOH B 753 1.97 REMARK 500 O HOH A 619 O HOH A 687 1.97 REMARK 500 O HOH A 706 O HOH A 748 1.97 REMARK 500 O HOH B 697 O HOH B 722 1.99 REMARK 500 O HOH A 560 O HOH A 754 2.00 REMARK 500 O HOH B 678 O HOH B 705 2.00 REMARK 500 O HOH A 713 O HOH A 777 2.01 REMARK 500 O HOH A 696 O HOH A 731 2.03 REMARK 500 O HOH B 580 O HOH B 762 2.03 REMARK 500 O ALA B 231 O HOH B 502 2.04 REMARK 500 O HOH B 693 O HOH B 698 2.04 REMARK 500 REMARK 500 THIS ENTRY HAS 82 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 734 O HOH B 813 3546 1.81 REMARK 500 O HOH A 569 O HOH A 794 4445 1.92 REMARK 500 CL CL A 406 O HOH A 730 4445 1.93 REMARK 500 CL CL A 405 O HOH A 730 4445 2.00 REMARK 500 O HOH A 615 O HOH B 787 4445 2.05 REMARK 500 CL CL A 406 O HOH A 794 4445 2.05 REMARK 500 O HOH A 769 O HOH B 631 2555 2.07 REMARK 500 O HOH B 515 O HOH B 634 4444 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 148.37 73.10 REMARK 500 TRP A 87 69.52 71.94 REMARK 500 ALA A 195 -105.21 -151.62 REMARK 500 VAL A 234 34.42 -142.17 REMARK 500 ASP B 84 147.61 72.86 REMARK 500 TRP B 87 72.85 67.38 REMARK 500 ALA B 195 -106.67 -152.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 725 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.0 REMARK 620 3 HIS A 196 NE2 102.4 104.5 REMARK 620 4 OH A 404 O 116.5 115.6 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 103.0 REMARK 620 3 HIS A 263 NE2 83.6 103.6 REMARK 620 4 OH A 404 O 83.0 116.6 139.6 REMARK 620 5 HOH A 701 O 156.0 100.9 88.1 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 41.9 REMARK 620 3 HOH A 730 O 136.0 94.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 98.3 REMARK 620 3 HIS B 196 NE2 103.9 109.2 REMARK 620 4 OH B 405 O 114.5 111.4 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 107.2 REMARK 620 3 HIS B 263 NE2 83.0 104.2 REMARK 620 4 9OB B 401 N03 131.4 120.9 91.5 REMARK 620 5 OH B 405 O 82.2 111.4 144.1 74.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 HIS B 285 ND1 48.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9OB B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 408 DBREF 6TMB A -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 DBREF 6TMB B -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU SEQRES 1 B 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 B 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 B 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 B 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 B 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 B 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 B 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 B 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 B 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 B 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 B 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 B 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 B 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 B 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 B 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 B 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 B 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 B 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 B 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 B 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 B 266 ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET OH A 404 2 HET CL A 405 1 HET CL A 406 1 HET 9OB B 401 43 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HET OH B 405 2 HET CL B 406 1 HET CL B 407 1 HET IOD B 408 1 HETNAM ZN ZINC ION HETNAM OH HYDROXIDE ION HETNAM CL CHLORIDE ION HETNAM 9OB ~{N}-[[5-[[(PHENYLMETHYL)AMINO]METHYL]-1~{H}-1,2,3- HETNAM 2 9OB TRIAZOL-4-YL]METHYL]BENZENESULFONAMIDE HETNAM IOD IODIDE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 6 OH 2(H O 1-) FORMUL 7 CL 4(CL 1-) FORMUL 9 9OB C17 H19 N5 O2 S FORMUL 16 IOD I 1- FORMUL 17 HOH *658(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 GLY A 220 ILE A 223 5 4 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 HELIX 9 AA9 THR B 33 ILE B 37 5 5 HELIX 10 AB1 GLY B 88 ILE B 104 1 16 HELIX 11 AB2 HIS B 118 GLY B 123 1 6 HELIX 12 AB3 GLY B 124 ALA B 131 1 8 HELIX 13 AB4 SER B 139 GLY B 150 1 12 HELIX 14 AB5 GLY B 220 ILE B 223 5 4 HELIX 15 AB6 GLU B 241 TYR B 253 1 13 HELIX 16 AB7 LEU B 280 ASN B 295 1 16 SHEET 1 AA1 7 VAL A 42 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ILE A 73 N TRP A 53 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 VAL A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 TYR A 218 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 ILE A 260 1 O PHE A 258 N LEU A 217 SHEET 1 AA3 7 ARG B 43 ALA B 49 0 SHEET 2 AA3 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 AA3 7 ALA B 64 ASP B 76 -1 O ALA B 64 N PHE B 61 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O ILE B 83 N LEU B 72 SHEET 5 AA3 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 AA3 7 ALA B 135 ALA B 138 1 O ALA B 135 N ALA B 112 SHEET 7 AA3 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 AA4 5 ASP B 180 PHE B 184 0 SHEET 2 AA4 5 VAL B 187 TYR B 191 -1 O LEU B 189 N VAL B 182 SHEET 3 AA4 5 VAL B 202 VAL B 205 -1 O VAL B 202 N PHE B 190 SHEET 4 AA4 5 VAL B 216 TYR B 218 -1 O TYR B 218 N VAL B 203 SHEET 5 AA4 5 PHE B 258 ILE B 260 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.07 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.96 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.21 LINK NE2 HIS A 170 ZN ZN A 403 1555 1555 2.04 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 1.99 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.24 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.11 LINK ND1 HIS A 285 ZN ZN A 403 1555 4455 2.03 LINK ZN ZN A 401 O OH A 404 1555 1555 1.97 LINK ZN ZN A 402 O OH A 404 1555 1555 2.07 LINK ZN ZN A 402 O HOH A 701 1555 1555 2.25 LINK ZN ZN A 403 O HOH A 730 1555 4445 1.99 LINK NE2 HIS B 116 ZN ZN B 402 1555 1555 2.06 LINK ND1 HIS B 118 ZN ZN B 402 1555 1555 1.95 LINK OD2 ASP B 120 ZN ZN B 403 1555 1555 2.14 LINK NE2 HIS B 170 ZN ZN B 404 1555 1555 1.99 LINK NE2 HIS B 196 ZN ZN B 402 1555 1555 1.99 LINK SG CYS B 221 ZN ZN B 403 1555 1555 2.25 LINK NE2 HIS B 263 ZN ZN B 403 1555 1555 2.10 LINK ND1 HIS B 285 ZN ZN B 404 1555 4444 2.03 LINK N03 9OB B 401 ZN ZN B 403 1555 1555 2.07 LINK ZN ZN B 402 O OH B 405 1555 1555 1.88 LINK ZN ZN B 403 O OH B 405 1555 1555 2.28 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 ZN A 402 SITE 2 AC1 5 OH A 404 SITE 1 AC2 6 ASP A 120 CYS A 221 HIS A 263 ZN A 401 SITE 2 AC2 6 OH A 404 HOH A 701 SITE 1 AC3 5 HIS A 170 HIS A 285 CL A 405 CL A 406 SITE 2 AC3 5 HOH A 730 SITE 1 AC4 10 HIS A 116 HIS A 118 ASP A 120 HIS A 196 SITE 2 AC4 10 CYS A 221 ZN A 401 ZN A 402 HOH A 558 SITE 3 AC4 10 HOH A 597 HOH A 701 SITE 1 AC5 6 HIS A 170 HIS A 285 ASN A 288 ZN A 403 SITE 2 AC5 6 CL A 406 HOH A 730 SITE 1 AC6 7 HIS A 170 HIS A 285 ZN A 403 CL A 405 SITE 2 AC6 7 HOH A 569 HOH A 730 HOH A 794 SITE 1 AC7 16 PHE B 61 TYR B 67 TRP B 87 ASP B 120 SITE 2 AC7 16 HIS B 196 ARG B 228 GLY B 232 ASN B 233 SITE 3 AC7 16 HIS B 263 ZN B 402 ZN B 403 OH B 405 SITE 4 AC7 16 IOD B 408 HOH B 502 HOH B 548 HOH B 687 SITE 1 AC8 6 HIS B 116 HIS B 118 HIS B 196 9OB B 401 SITE 2 AC8 6 ZN B 403 OH B 405 SITE 1 AC9 6 ASP B 120 CYS B 221 HIS B 263 9OB B 401 SITE 2 AC9 6 ZN B 402 OH B 405 SITE 1 AD1 4 HIS B 170 HIS B 285 CL B 406 CL B 407 SITE 1 AD2 7 HIS B 116 HIS B 118 ASP B 120 HIS B 196 SITE 2 AD2 7 9OB B 401 ZN B 402 ZN B 403 SITE 1 AD3 7 ALA B 135 HIS B 170 HIS B 285 ASN B 288 SITE 2 AD3 7 ZN B 404 CL B 407 HOH B 732 SITE 1 AD4 7 HIS B 170 HIS B 285 ASN B 288 ZN B 404 SITE 2 AD4 7 CL B 406 HOH B 580 HOH B 762 SITE 1 AD5 3 GLU B 225 HIS B 263 9OB B 401 CRYST1 100.590 79.026 67.235 90.00 130.09 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009941 0.000000 0.008370 0.00000 SCALE2 0.000000 0.012654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019442 0.00000