data_6TON
#
_entry.id 6TON
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6TON pdb_00006ton 10.2210/pdb6ton/pdb
WWPDB D_1292104977 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2020-04-22
2 'Structure model' 1 1 2020-05-06
3 'Structure model' 1 2 2024-01-24
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' chem_comp_atom
4 3 'Structure model' chem_comp_bond
5 3 'Structure model' database_2
6 3 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation.page_first'
3 2 'Structure model' '_citation.page_last'
4 2 'Structure model' '_citation_author.identifier_ORCID'
5 3 'Structure model' '_database_2.pdbx_DOI'
6 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6TON
_pdbx_database_status.recvd_initial_deposition_date 2019-12-11
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Rodrigues, M.J.' 1 0000-0003-1243-903X
'Le Bihan, Y.-V.' 2 0000-0002-6850-9706
'van Montfort, R.L.M.' 3 0000-0002-5688-3450
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev J.Med.Chem.
_citation.journal_id_ASTM JMCMAR
_citation.journal_id_CSD 0151
_citation.journal_id_ISSN 0022-2623
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 63
_citation.language ?
_citation.page_first 4047
_citation.page_last 4068
_citation.title
'AchievingIn VivoTarget Depletion through the Discovery and Optimization of Benzimidazolone BCL6 Degraders.'
_citation.year 2020
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.9b02076
_citation.pdbx_database_id_PubMed 32275432
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Bellenie, B.R.' 1 ?
primary 'Cheung, K.J.' 2 ?
primary 'Varela, A.' 3 ?
primary 'Pierrat, O.A.' 4 ?
primary 'Collie, G.W.' 5 ?
primary 'Box, G.M.' 6 ?
primary 'Bright, M.D.' 7 ?
primary 'Gowan, S.' 8 ?
primary 'Hayes, A.' 9 ?
primary 'Rodrigues, M.J.' 10 ?
primary 'Shetty, K.N.' 11 ?
primary 'Carter, M.' 12 ?
primary 'Davis, O.A.' 13 ?
primary 'Henley, A.T.' 14 ?
primary 'Innocenti, P.' 15 ?
primary 'Johnson, L.D.' 16 ?
primary 'Liu, M.' 17 ?
primary 'de Klerk, S.' 18 ?
primary 'Le Bihan, Y.V.' 19 ?
primary 'Lloyd, M.G.' 20 ?
primary 'McAndrew, P.C.' 21 ?
primary 'Shehu, E.' 22 ?
primary 'Talbot, R.' 23 ?
primary 'Woodward, H.L.' 24 ?
primary 'Burke, R.' 25 ?
primary 'Kirkin, V.' 26 ?
primary 'van Montfort, R.L.M.' 27 ?
primary 'Raynaud, F.I.' 28 ?
primary 'Rossanese, O.W.' 29 ?
primary 'Hoelder, S.' 30 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'B-cell lymphoma 6 protein' 14536.915 1 ? ? ? ?
2 polymer syn ALA-TRP-VAL-ILE-PRO-ALA 655.784 1 ? ? ? ?
3 non-polymer syn
'5-[[5-chloranyl-2-(2,2,6,6-tetramethylmorpholin-4-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one'
503.037 1 ? ? ? ?
4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ?
5 water nat water 18.015 86 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'BCL-6,B-cell lymphoma 5 protein,BCL-5,Protein LAZ-3,Zinc finger and BTB domain-containing protein 27,Zinc finger protein 51'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;GPGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPE
GFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE
;
;GPGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPE
GFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE
;
A ?
2 'polypeptide(L)' no no AWVIPA AWVIPA B ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3
'5-[[5-chloranyl-2-(2,2,6,6-tetramethylmorpholin-4-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one'
NR5
4 1,2-ETHANEDIOL EDO
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 PRO n
1 3 GLY n
1 4 ALA n
1 5 ASP n
1 6 SER n
1 7 CYS n
1 8 ILE n
1 9 GLN n
1 10 PHE n
1 11 THR n
1 12 ARG n
1 13 HIS n
1 14 ALA n
1 15 SER n
1 16 ASP n
1 17 VAL n
1 18 LEU n
1 19 LEU n
1 20 ASN n
1 21 LEU n
1 22 ASN n
1 23 ARG n
1 24 LEU n
1 25 ARG n
1 26 SER n
1 27 ARG n
1 28 ASP n
1 29 ILE n
1 30 LEU n
1 31 THR n
1 32 ASP n
1 33 VAL n
1 34 VAL n
1 35 ILE n
1 36 VAL n
1 37 VAL n
1 38 SER n
1 39 ARG n
1 40 GLU n
1 41 GLN n
1 42 PHE n
1 43 ARG n
1 44 ALA n
1 45 HIS n
1 46 LYS n
1 47 THR n
1 48 VAL n
1 49 LEU n
1 50 MET n
1 51 ALA n
1 52 CYS n
1 53 SER n
1 54 GLY n
1 55 LEU n
1 56 PHE n
1 57 TYR n
1 58 SER n
1 59 ILE n
1 60 PHE n
1 61 THR n
1 62 ASP n
1 63 GLN n
1 64 LEU n
1 65 LYS n
1 66 CYS n
1 67 ASN n
1 68 LEU n
1 69 SER n
1 70 VAL n
1 71 ILE n
1 72 ASN n
1 73 LEU n
1 74 ASP n
1 75 PRO n
1 76 GLU n
1 77 ILE n
1 78 ASN n
1 79 PRO n
1 80 GLU n
1 81 GLY n
1 82 PHE n
1 83 CYS n
1 84 ILE n
1 85 LEU n
1 86 LEU n
1 87 ASP n
1 88 PHE n
1 89 MET n
1 90 TYR n
1 91 THR n
1 92 SER n
1 93 ARG n
1 94 LEU n
1 95 ASN n
1 96 LEU n
1 97 ARG n
1 98 GLU n
1 99 GLY n
1 100 ASN n
1 101 ILE n
1 102 MET n
1 103 ALA n
1 104 VAL n
1 105 MET n
1 106 ALA n
1 107 THR n
1 108 ALA n
1 109 MET n
1 110 TYR n
1 111 LEU n
1 112 GLN n
1 113 MET n
1 114 GLU n
1 115 HIS n
1 116 VAL n
1 117 VAL n
1 118 ASP n
1 119 THR n
1 120 CYS n
1 121 ARG n
1 122 LYS n
1 123 PHE n
1 124 ILE n
1 125 LYS n
1 126 ALA n
1 127 SER n
1 128 GLU n
2 1 ALA n
2 2 TRP n
2 3 VAL n
2 4 ILE n
2 5 PRO n
2 6 ALA n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 128
_entity_src_gen.gene_src_common_name Human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'BCL6, BCL5, LAZ3, ZBTB27, ZNF51'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant AI
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type Plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET48b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_src_syn.entity_id 2
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NR5 non-polymer .
'5-[[5-chloranyl-2-(2,2,6,6-tetramethylmorpholin-4-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one'
? 'C25 H35 Cl N6 O3' 503.037
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 2 ? ? ? A . n
A 1 2 PRO 2 3 ? ? ? A . n
A 1 3 GLY 3 4 ? ? ? A . n
A 1 4 ALA 4 5 5 ALA ALA A . n
A 1 5 ASP 5 6 6 ASP ASP A . n
A 1 6 SER 6 7 7 SER SER A . n
A 1 7 CYS 7 8 8 CYS CYS A . n
A 1 8 ILE 8 9 9 ILE ILE A . n
A 1 9 GLN 9 10 10 GLN GLN A . n
A 1 10 PHE 10 11 11 PHE PHE A . n
A 1 11 THR 11 12 12 THR THR A . n
A 1 12 ARG 12 13 13 ARG ARG A . n
A 1 13 HIS 13 14 14 HIS HIS A . n
A 1 14 ALA 14 15 15 ALA ALA A . n
A 1 15 SER 15 16 16 SER SER A . n
A 1 16 ASP 16 17 17 ASP ASP A . n
A 1 17 VAL 17 18 18 VAL VAL A . n
A 1 18 LEU 18 19 19 LEU LEU A . n
A 1 19 LEU 19 20 20 LEU LEU A . n
A 1 20 ASN 20 21 21 ASN ASN A . n
A 1 21 LEU 21 22 22 LEU LEU A . n
A 1 22 ASN 22 23 23 ASN ASN A . n
A 1 23 ARG 23 24 24 ARG ARG A . n
A 1 24 LEU 24 25 25 LEU LEU A . n
A 1 25 ARG 25 26 26 ARG ARG A . n
A 1 26 SER 26 27 27 SER SER A . n
A 1 27 ARG 27 28 28 ARG ARG A . n
A 1 28 ASP 28 29 29 ASP ASP A . n
A 1 29 ILE 29 30 30 ILE ILE A . n
A 1 30 LEU 30 31 31 LEU LEU A . n
A 1 31 THR 31 32 32 THR THR A . n
A 1 32 ASP 32 33 33 ASP ASP A . n
A 1 33 VAL 33 34 34 VAL VAL A . n
A 1 34 VAL 34 35 35 VAL VAL A . n
A 1 35 ILE 35 36 36 ILE ILE A . n
A 1 36 VAL 36 37 37 VAL VAL A . n
A 1 37 VAL 37 38 38 VAL VAL A . n
A 1 38 SER 38 39 39 SER SER A . n
A 1 39 ARG 39 40 40 ARG ARG A . n
A 1 40 GLU 40 41 41 GLU GLU A . n
A 1 41 GLN 41 42 42 GLN GLN A . n
A 1 42 PHE 42 43 43 PHE PHE A . n
A 1 43 ARG 43 44 44 ARG ARG A . n
A 1 44 ALA 44 45 45 ALA ALA A . n
A 1 45 HIS 45 46 46 HIS HIS A . n
A 1 46 LYS 46 47 47 LYS LYS A . n
A 1 47 THR 47 48 48 THR THR A . n
A 1 48 VAL 48 49 49 VAL VAL A . n
A 1 49 LEU 49 50 50 LEU LEU A . n
A 1 50 MET 50 51 51 MET MET A . n
A 1 51 ALA 51 52 52 ALA ALA A . n
A 1 52 CYS 52 53 53 CYS CYS A . n
A 1 53 SER 53 54 54 SER SER A . n
A 1 54 GLY 54 55 55 GLY GLY A . n
A 1 55 LEU 55 56 56 LEU LEU A . n
A 1 56 PHE 56 57 57 PHE PHE A . n
A 1 57 TYR 57 58 58 TYR TYR A . n
A 1 58 SER 58 59 59 SER SER A . n
A 1 59 ILE 59 60 60 ILE ILE A . n
A 1 60 PHE 60 61 61 PHE PHE A . n
A 1 61 THR 61 62 62 THR THR A . n
A 1 62 ASP 62 63 63 ASP ASP A . n
A 1 63 GLN 63 64 64 GLN GLN A . n
A 1 64 LEU 64 65 65 LEU LEU A . n
A 1 65 LYS 65 66 66 LYS LYS A . n
A 1 66 CYS 66 67 67 CYS CYS A . n
A 1 67 ASN 67 68 68 ASN ASN A . n
A 1 68 LEU 68 69 69 LEU LEU A . n
A 1 69 SER 69 70 70 SER SER A . n
A 1 70 VAL 70 71 71 VAL VAL A . n
A 1 71 ILE 71 72 72 ILE ILE A . n
A 1 72 ASN 72 73 73 ASN ASN A . n
A 1 73 LEU 73 74 74 LEU LEU A . n
A 1 74 ASP 74 75 75 ASP ASP A . n
A 1 75 PRO 75 76 76 PRO PRO A . n
A 1 76 GLU 76 77 77 GLU GLU A . n
A 1 77 ILE 77 78 78 ILE ILE A . n
A 1 78 ASN 78 79 79 ASN ASN A . n
A 1 79 PRO 79 80 80 PRO PRO A . n
A 1 80 GLU 80 81 81 GLU GLU A . n
A 1 81 GLY 81 82 82 GLY GLY A . n
A 1 82 PHE 82 83 83 PHE PHE A . n
A 1 83 CYS 83 84 84 CYS CYS A . n
A 1 84 ILE 84 85 85 ILE ILE A . n
A 1 85 LEU 85 86 86 LEU LEU A . n
A 1 86 LEU 86 87 87 LEU LEU A . n
A 1 87 ASP 87 88 88 ASP ASP A . n
A 1 88 PHE 88 89 89 PHE PHE A . n
A 1 89 MET 89 90 90 MET MET A . n
A 1 90 TYR 90 91 91 TYR TYR A . n
A 1 91 THR 91 92 92 THR THR A . n
A 1 92 SER 92 93 93 SER SER A . n
A 1 93 ARG 93 94 94 ARG ARG A . n
A 1 94 LEU 94 95 95 LEU LEU A . n
A 1 95 ASN 95 96 96 ASN ASN A . n
A 1 96 LEU 96 97 97 LEU LEU A . n
A 1 97 ARG 97 98 98 ARG ARG A . n
A 1 98 GLU 98 99 99 GLU GLU A . n
A 1 99 GLY 99 100 100 GLY GLY A . n
A 1 100 ASN 100 101 101 ASN ASN A . n
A 1 101 ILE 101 102 102 ILE ILE A . n
A 1 102 MET 102 103 103 MET MET A . n
A 1 103 ALA 103 104 104 ALA ALA A . n
A 1 104 VAL 104 105 105 VAL VAL A . n
A 1 105 MET 105 106 106 MET MET A . n
A 1 106 ALA 106 107 107 ALA ALA A . n
A 1 107 THR 107 108 108 THR THR A . n
A 1 108 ALA 108 109 109 ALA ALA A . n
A 1 109 MET 109 110 110 MET MET A . n
A 1 110 TYR 110 111 111 TYR TYR A . n
A 1 111 LEU 111 112 112 LEU LEU A . n
A 1 112 GLN 112 113 113 GLN GLN A . n
A 1 113 MET 113 114 114 MET MET A . n
A 1 114 GLU 114 115 115 GLU GLU A . n
A 1 115 HIS 115 116 116 HIS HIS A . n
A 1 116 VAL 116 117 117 VAL VAL A . n
A 1 117 VAL 117 118 118 VAL VAL A . n
A 1 118 ASP 118 119 119 ASP ASP A . n
A 1 119 THR 119 120 120 THR THR A . n
A 1 120 CYS 120 121 121 CYS CYS A . n
A 1 121 ARG 121 122 122 ARG ARG A . n
A 1 122 LYS 122 123 123 LYS LYS A . n
A 1 123 PHE 123 124 124 PHE PHE A . n
A 1 124 ILE 124 125 125 ILE ILE A . n
A 1 125 LYS 125 126 126 LYS LYS A . n
A 1 126 ALA 126 127 127 ALA ALA A . n
A 1 127 SER 127 128 128 SER SER A . n
A 1 128 GLU 128 129 129 GLU GLU A . n
B 2 1 ALA 1 0 0 ALA ALA B . n
B 2 2 TRP 2 1 1 TRP TRP B . n
B 2 3 VAL 3 2 2 VAL VAL B . n
B 2 4 ILE 4 3 3 ILE ILE B . n
B 2 5 PRO 5 4 4 PRO PRO B . n
B 2 6 ALA 6 5 5 ALA ALA B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NR5 1 201 200 NR5 400 A .
D 4 EDO 1 202 2 EDO EDO A .
E 4 EDO 1 101 1 EDO EDO B .
F 5 HOH 1 301 111 HOH HOH A .
F 5 HOH 2 302 90 HOH HOH A .
F 5 HOH 3 303 39 HOH HOH A .
F 5 HOH 4 304 102 HOH HOH A .
F 5 HOH 5 305 95 HOH HOH A .
F 5 HOH 6 306 71 HOH HOH A .
F 5 HOH 7 307 2 HOH HOH A .
F 5 HOH 8 308 5 HOH HOH A .
F 5 HOH 9 309 114 HOH HOH A .
F 5 HOH 10 310 21 HOH HOH A .
F 5 HOH 11 311 100 HOH HOH A .
F 5 HOH 12 312 1 HOH HOH A .
F 5 HOH 13 313 81 HOH HOH A .
F 5 HOH 14 314 107 HOH HOH A .
F 5 HOH 15 315 10 HOH HOH A .
F 5 HOH 16 316 3 HOH HOH A .
F 5 HOH 17 317 34 HOH HOH A .
F 5 HOH 18 318 105 HOH HOH A .
F 5 HOH 19 319 109 HOH HOH A .
F 5 HOH 20 320 15 HOH HOH A .
F 5 HOH 21 321 22 HOH HOH A .
F 5 HOH 22 322 6 HOH HOH A .
F 5 HOH 23 323 48 HOH HOH A .
F 5 HOH 24 324 8 HOH HOH A .
F 5 HOH 25 325 51 HOH HOH A .
F 5 HOH 26 326 25 HOH HOH A .
F 5 HOH 27 327 32 HOH HOH A .
F 5 HOH 28 328 12 HOH HOH A .
F 5 HOH 29 329 4 HOH HOH A .
F 5 HOH 30 330 53 HOH HOH A .
F 5 HOH 31 331 11 HOH HOH A .
F 5 HOH 32 332 52 HOH HOH A .
F 5 HOH 33 333 36 HOH HOH A .
F 5 HOH 34 334 7 HOH HOH A .
F 5 HOH 35 335 19 HOH HOH A .
F 5 HOH 36 336 113 HOH HOH A .
F 5 HOH 37 337 28 HOH HOH A .
F 5 HOH 38 338 64 HOH HOH A .
F 5 HOH 39 339 96 HOH HOH A .
F 5 HOH 40 340 89 HOH HOH A .
F 5 HOH 41 341 44 HOH HOH A .
F 5 HOH 42 342 27 HOH HOH A .
F 5 HOH 43 343 9 HOH HOH A .
F 5 HOH 44 344 33 HOH HOH A .
F 5 HOH 45 345 24 HOH HOH A .
F 5 HOH 46 346 20 HOH HOH A .
F 5 HOH 47 347 38 HOH HOH A .
F 5 HOH 48 348 23 HOH HOH A .
F 5 HOH 49 349 108 HOH HOH A .
F 5 HOH 50 350 13 HOH HOH A .
F 5 HOH 51 351 83 HOH HOH A .
F 5 HOH 52 352 50 HOH HOH A .
F 5 HOH 53 353 79 HOH HOH A .
F 5 HOH 54 354 56 HOH HOH A .
F 5 HOH 55 355 37 HOH HOH A .
F 5 HOH 56 356 26 HOH HOH A .
F 5 HOH 57 357 88 HOH HOH A .
F 5 HOH 58 358 17 HOH HOH A .
F 5 HOH 59 359 14 HOH HOH A .
F 5 HOH 60 360 18 HOH HOH A .
F 5 HOH 61 361 94 HOH HOH A .
F 5 HOH 62 362 55 HOH HOH A .
F 5 HOH 63 363 112 HOH HOH A .
F 5 HOH 64 364 86 HOH HOH A .
F 5 HOH 65 365 91 HOH HOH A .
F 5 HOH 66 366 85 HOH HOH A .
F 5 HOH 67 367 29 HOH HOH A .
F 5 HOH 68 368 45 HOH HOH A .
F 5 HOH 69 369 110 HOH HOH A .
F 5 HOH 70 370 30 HOH HOH A .
F 5 HOH 71 371 31 HOH HOH A .
F 5 HOH 72 372 80 HOH HOH A .
F 5 HOH 73 373 106 HOH HOH A .
F 5 HOH 74 374 99 HOH HOH A .
F 5 HOH 75 375 103 HOH HOH A .
F 5 HOH 76 376 63 HOH HOH A .
F 5 HOH 77 377 69 HOH HOH A .
F 5 HOH 78 378 62 HOH HOH A .
F 5 HOH 79 379 77 HOH HOH A .
F 5 HOH 80 380 35 HOH HOH A .
F 5 HOH 81 381 74 HOH HOH A .
F 5 HOH 82 382 70 HOH HOH A .
F 5 HOH 83 383 67 HOH HOH A .
G 5 HOH 1 201 101 HOH HOH B .
G 5 HOH 2 202 72 HOH HOH B .
G 5 HOH 3 203 84 HOH HOH B .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ASP 6 ? CG ? A ASP 5 CG
2 1 Y 1 A ASP 6 ? OD1 ? A ASP 5 OD1
3 1 Y 1 A ASP 6 ? OD2 ? A ASP 5 OD2
4 1 Y 1 A ARG 13 ? NE ? A ARG 12 NE
5 1 Y 1 A ARG 13 ? CZ ? A ARG 12 CZ
6 1 Y 1 A ARG 13 ? NH1 ? A ARG 12 NH1
7 1 Y 1 A ARG 13 ? NH2 ? A ARG 12 NH2
8 1 Y 1 A ARG 40 ? CG ? A ARG 39 CG
9 1 Y 1 A ARG 40 ? CD ? A ARG 39 CD
10 1 Y 1 A ARG 40 ? NE ? A ARG 39 NE
11 1 Y 1 A ARG 40 ? CZ ? A ARG 39 CZ
12 1 Y 1 A ARG 40 ? NH1 ? A ARG 39 NH1
13 1 Y 1 A ARG 40 ? NH2 ? A ARG 39 NH2
14 1 Y 1 A GLU 41 ? CD ? A GLU 40 CD
15 1 Y 1 A GLU 41 ? OE1 ? A GLU 40 OE1
16 1 Y 1 A GLU 41 ? OE2 ? A GLU 40 OE2
17 1 Y 1 A GLN 64 ? CD ? A GLN 63 CD
18 1 Y 1 A GLN 64 ? OE1 ? A GLN 63 OE1
19 1 Y 1 A GLN 64 ? NE2 ? A GLN 63 NE2
20 1 Y 1 A GLU 77 ? CD ? A GLU 76 CD
21 1 Y 1 A GLU 77 ? OE1 ? A GLU 76 OE1
22 1 Y 1 A GLU 77 ? OE2 ? A GLU 76 OE2
23 1 Y 1 A GLU 81 ? OE1 ? A GLU 80 OE1
24 1 Y 1 A GLU 81 ? OE2 ? A GLU 80 OE2
25 1 Y 1 A ARG 98 ? NE ? A ARG 97 NE
26 1 Y 1 A ARG 98 ? CZ ? A ARG 97 CZ
27 1 Y 1 A ARG 98 ? NH1 ? A ARG 97 NH1
28 1 Y 1 A ARG 98 ? NH2 ? A ARG 97 NH2
29 1 Y 1 A GLU 99 ? CG ? A GLU 98 CG
30 1 Y 1 A GLU 99 ? CD ? A GLU 98 CD
31 1 Y 1 A GLU 99 ? OE1 ? A GLU 98 OE1
32 1 Y 1 A GLU 99 ? OE2 ? A GLU 98 OE2
33 1 Y 1 A ARG 122 ? CZ ? A ARG 121 CZ
34 1 Y 1 A ARG 122 ? NH1 ? A ARG 121 NH1
35 1 Y 1 A ARG 122 ? NH2 ? A ARG 121 NH2
36 1 Y 1 A LYS 123 ? CE ? A LYS 122 CE
37 1 Y 1 A LYS 123 ? NZ ? A LYS 122 NZ
38 1 Y 1 A LYS 126 ? CD ? A LYS 125 CD
39 1 Y 1 A LYS 126 ? CE ? A LYS 125 CE
40 1 Y 1 A LYS 126 ? NZ ? A LYS 125 NZ
41 1 Y 1 A GLU 129 ? O ? A GLU 128 O
42 1 Y 1 B ALA 0 ? N ? B ALA 1 N
43 1 Y 1 B ALA 0 ? CB ? B ALA 1 CB
44 1 Y 1 B ALA 5 ? CA ? B ALA 6 CA
45 1 Y 1 B ALA 5 ? C ? B ALA 6 C
46 1 Y 1 B ALA 5 ? O ? B ALA 6 O
47 1 Y 1 B ALA 5 ? CB ? B ALA 6 CB
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 2
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4
? 'data collection' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 6TON
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 67.503
_cell.length_a_esd ?
_cell.length_b 67.503
_cell.length_b_esd ?
_cell.length_c 170.053
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 12
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6TON
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6TON
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.73
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 67.05
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;2 microliter of the BCL6-BTB/WVIP complex at 4 mg/mL plus 1 microliter of a crystallisation solution consisting of 1 M K2HPO4, 0.7 M NaH2PO4, 75 mM sodium acetate buffer pH 4.5 and 2 % DMSO, against 350 microliter of crystallisation solution.
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS3 2M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2018-03-17
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9660
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'ESRF BEAMLINE MASSIF-1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9660
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline MASSIF-1
_diffrn_source.pdbx_synchrotron_site ESRF
#
_reflns.B_iso_Wilson_estimate 46.200
_reflns.entry_id 6TON
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.360
_reflns.d_resolution_low 48.170
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 10122
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.800
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 14.500
_reflns.pdbx_Rmerge_I_obs 0.300
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 7.600
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects 29
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.311
_reflns.pdbx_Rpim_I_all 0.080
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 146662
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.996
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
2.360 2.450 ? ? 15662 ? ? ? 1011 98.800 ? ? ? ? 3.283 ? ? ? ? ? ? ? ? 15.500 ? ? ? 1.400 3.397 0.853 ? 1 1 0.411 ? ?
8.830 48.170 ? ? 3114 ? ? ? 256 98.200 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 12.200 ? ? ? 18.500 0.048 0.013 ? 2 1 0.999 ? ?
#
_refine.aniso_B[1][1] 1.8094
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] 1.8094
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -3.6188
_refine.B_iso_max 115.990
_refine.B_iso_mean 46.6600
_refine.B_iso_min 22.320
_refine.correlation_coeff_Fo_to_Fc 0.9420
_refine.correlation_coeff_Fo_to_Fc_free 0.9300
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6TON
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.3600
_refine.ls_d_res_low 40.7000
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 10063
_refine.ls_number_reflns_R_free 525
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.7000
_refine.ls_percent_reflns_R_free 5.2200
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1970
_refine.ls_R_factor_R_free 0.2320
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1950
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 3BIM
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1850
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.1970
_refine.pdbx_overall_SU_R_Blow_DPI 0.2440
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI 0.2120
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_analyze.entry_id 6TON
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_coordinate_error_obs 0.300
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_sigma_a_free_details ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_sigma_a_obs_details ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.RG_d_res_high ?
_refine_analyze.RG_d_res_low ?
_refine_analyze.RG_free ?
_refine_analyze.RG_work ?
_refine_analyze.RG_free_work_ratio ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 2.3600
_refine_hist.d_res_low 40.7000
_refine_hist.number_atoms_solvent 87
_refine_hist.number_atoms_total 1126
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 131
_refine_hist.pdbx_B_iso_mean_ligand 40.97
_refine_hist.pdbx_B_iso_mean_solvent 55.73
_refine_hist.pdbx_number_atoms_protein 996
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 43
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? ? ? 377 ? t_dihedral_angle_d 2.000 SINUSOIDAL
'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ?
'X-RAY DIFFRACTION' ? ? ? 203 ? t_gen_planes 5.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 1099 ? t_it 20.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ?
'X-RAY DIFFRACTION' ? ? ? 146 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? 3 ? t_sum_occupancies 1.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 1333 ? t_ideal_dist_contact 4.000 SEMIHARMONIC
'X-RAY DIFFRACTION' ? 0.010 ? 1099 ? t_bond_d 2.000 HARMONIC
'X-RAY DIFFRACTION' ? 1.110 ? 1499 ? t_angle_deg 2.000 HARMONIC
'X-RAY DIFFRACTION' ? 2.920 ? ? ? t_omega_torsion ? ?
'X-RAY DIFFRACTION' ? 16.930 ? ? ? t_other_torsion ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.3600
_refine_ls_shell.d_res_low 2.3900
_refine_ls_shell.number_reflns_all 388
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 18
_refine_ls_shell.number_reflns_R_work 370
_refine_ls_shell.percent_reflns_obs 96.0200
_refine_ls_shell.percent_reflns_R_free 4.6400
_refine_ls_shell.R_factor_all 0.2470
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2729
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.2458
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_R_complete ?
_refine_ls_shell.pdbx_total_number_of_bins_used 26
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 6TON
_struct.title 'Crystal structure of human BCL6 BTB domain in complex with compound 25b'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6TON
_struct_keywords.text 'Cancer, Lymphoma, Inhibitor, Degrader, TRANSCRIPTION'
_struct_keywords.pdbx_keywords TRANSCRIPTION
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 5 ?
G N N 5 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP BCL6_HUMAN P41182 ? 1
;ADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFC
ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE
;
5
2 PDB 6TON 6TON ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6TON A 4 ? 128 ? P41182 5 ? 129 ? 5 129
2 2 6TON B 1 ? 6 ? 6TON 0 ? 5 ? 0 5
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 6TON GLY A 1 ? UNP P41182 ? ? 'expression tag' 2 1
1 6TON PRO A 2 ? UNP P41182 ? ? 'expression tag' 3 2
1 6TON GLY A 3 ? UNP P41182 ? ? 'expression tag' 4 3
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 5260 ?
1 MORE -42 ?
1 'SSA (A^2)' 13490 ?
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1,4 A,C,D,F
1 2,3 B,E,G
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration'
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 28.3421666667
3 'crystal symmetry operation' 8_545 x-y,-y-1,-z 1.0000000000 0.0000000000 0.0000000000 33.7515000000 0.0000000000
-1.0000000000 0.0000000000 -58.4593128317 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 33.7515000000 0.8660254038
-0.5000000000 0.0000000000 -58.4593128317 0.0000000000 0.0000000000 -1.0000000000 28.3421666667
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 ARG A 12 ? ASP A 28 ? ARG A 13 ASP A 29 1 ? 17
HELX_P HELX_P2 AA2 HIS A 45 ? SER A 53 ? HIS A 46 SER A 54 1 ? 9
HELX_P HELX_P3 AA3 SER A 53 ? THR A 61 ? SER A 54 THR A 62 1 ? 9
HELX_P HELX_P4 AA4 LEU A 64 ? LEU A 68 ? LEU A 65 LEU A 69 5 ? 5
HELX_P HELX_P5 AA5 ASN A 78 ? SER A 92 ? ASN A 79 SER A 93 1 ? 15
HELX_P HELX_P6 AA6 ASN A 100 ? LEU A 111 ? ASN A 101 LEU A 112 1 ? 12
HELX_P HELX_P7 AA7 MET A 113 ? SER A 127 ? MET A 114 SER A 128 1 ? 15
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 2 ?
AA2 ? 3 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 GLN A 9 ? PHE A 10 ? GLN A 10 PHE A 11
AA1 2 TRP B 2 ? VAL B 3 ? TRP B 1 VAL B 2
AA2 1 GLU A 40 ? ALA A 44 ? GLU A 41 ALA A 45
AA2 2 VAL A 33 ? VAL A 37 ? VAL A 34 VAL A 38
AA2 3 VAL A 70 ? ASN A 72 ? VAL A 71 ASN A 73
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N GLN A 9 ? N GLN A 10 O VAL B 3 ? O VAL B 2
AA2 1 2 O PHE A 42 ? O PHE A 43 N ILE A 35 ? N ILE A 36
AA2 2 3 N VAL A 36 ? N VAL A 37 O ILE A 71 ? O ILE A 72
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A NR5 201 ? 15 'binding site for residue NR5 A 201'
AC2 Software A EDO 202 ? 3 'binding site for residue EDO A 202'
AC3 Software B EDO 101 ? 4 'binding site for residue EDO B 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 15 ASP A 16 ? ASP A 17 . ? 12_545 ?
2 AC1 15 ASN A 20 ? ASN A 21 . ? 12_545 ?
3 AC1 15 LEU A 24 ? LEU A 25 . ? 12_545 ?
4 AC1 15 ARG A 27 ? ARG A 28 . ? 12_545 ?
5 AC1 15 MET A 50 ? MET A 51 . ? 1_555 ?
6 AC1 15 ALA A 51 ? ALA A 52 . ? 1_555 ?
7 AC1 15 CYS A 52 ? CYS A 53 . ? 1_555 ?
8 AC1 15 TYR A 57 ? TYR A 58 . ? 1_555 ?
9 AC1 15 GLN A 112 ? GLN A 113 . ? 1_555 ?
10 AC1 15 MET A 113 ? MET A 114 . ? 1_555 ?
11 AC1 15 GLU A 114 ? GLU A 115 . ? 1_555 ?
12 AC1 15 HOH F . ? HOH A 308 . ? 1_555 ?
13 AC1 15 HOH F . ? HOH A 313 . ? 1_555 ?
14 AC1 15 HOH F . ? HOH A 322 . ? 1_555 ?
15 AC1 15 HOH F . ? HOH A 334 . ? 1_555 ?
16 AC2 3 GLU A 98 ? GLU A 99 . ? 1_555 ?
17 AC2 3 ILE A 124 ? ILE A 125 . ? 1_555 ?
18 AC2 3 SER A 127 ? SER A 128 . ? 1_555 ?
19 AC3 4 ILE A 8 ? ILE A 9 . ? 1_555 ?
20 AC3 4 ASN A 72 ? ASN A 73 . ? 5_554 ?
21 AC3 4 PHE A 123 ? PHE A 124 . ? 12_545 ?
22 AC3 4 TRP B 2 ? TRP B 1 . ? 1_555 ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 LEU A 31 ? ? 59.52 17.24
2 1 SER A 39 ? ? 52.64 -120.35
#
loop_
_pdbx_refine_tls.id
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[1][1]_esd
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][2]_esd
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[1][3]_esd
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[2][2]_esd
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.T[2][3]_esd
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[3][3]_esd
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[1][1]_esd
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][2]_esd
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[1][3]_esd
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[2][2]_esd
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.L[2][3]_esd
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[3][3]_esd
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][1]_esd
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][2]_esd
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[1][3]_esd
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][1]_esd
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][2]_esd
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][3]_esd
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][1]_esd
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][2]_esd
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[3][3]_esd
1 'X-RAY DIFFRACTION' ? refined 31.8211 -24.5021 16.0946 0.0123 ? 0.0378 ? -0.0278 ? -0.0433 ? -0.0573 ? -0.0021 ? 4.0549 ?
0.6943 ? -0.4126 ? 4.9907 ? 3.1224 ? 6.9383 ? 0.1913 ? -0.0555 ? -0.1207 ? 0.5678 ? -0.0099 ? -0.2540 ? 0.3222 ? -0.2507 ?
-0.1814 ?
2 'X-RAY DIFFRACTION' ? refined 38.9679 -17.1773 27.5666 0.0144 ? -0.0318 ? -0.0745 ? -0.1574 ? -0.1750 ? -0.1647 ? 2.5648 ?
-1.4296 ? -0.2387 ? -2.5057 ? 2.6894 ? 0.2041 ? -0.0006 ? -0.0400 ? 0.2778 ? 0.2490 ? 0.0103 ? -0.1103 ? -0.1106 ? 0.0850 ?
-0.0096 ?
3 'X-RAY DIFFRACTION' ? refined 33.8125 -7.9380 23.0415 0.0644 ? -0.0840 ? 0.1962 ? -0.1632 ? -0.0622 ? 0.0545 ? 3.1101 ?
1.4833 ? 0.8713 ? 8.1187 ? 3.7472 ? 5.4074 ? 0.1820 ? -0.1178 ? 0.7394 ? 0.1099 ? 0.1834 ? -0.1923 ? -0.7086 ? 0.2107 ?
-0.3654 ?
4 'X-RAY DIFFRACTION' ? refined 25.9810 -21.6789 30.1769 0.2204 ? -0.0604 ? 0.0689 ? -0.0609 ? 0.0093 ? -0.0745 ? 5.2458 ?
2.4172 ? -3.5222 ? 9.1511 ? 0.6527 ? 3.9769 ? 0.0789 ? -0.3086 ? -0.1430 ? 0.7799 ? -0.1932 ? 0.0943 ? 0.1529 ? -0.1645 ?
0.1143 ?
5 'X-RAY DIFFRACTION' ? refined 22.7075 -11.5688 31.8453 -0.0160 ? -0.1349 ? 0.1887 ? -0.2112 ? -0.0665 ? -0.1453 ? -1.2303 ?
-0.6918 ? -2.4281 ? 6.2898 ? 1.9588 ? 5.2287 ? 0.2386 ? -0.3773 ? 0.5022 ? 0.3803 ? -0.1411 ? 0.2187 ? 0.2412 ? -0.4892 ?
-0.0975 ?
6 'X-RAY DIFFRACTION' ? refined 12.9165 -15.8659 31.7669 0.1581 ? -0.1721 ? 0.2076 ? 0.0058 ? -0.0556 ? 0.0966 ? 5.8538 ?
-1.3139 ? -3.5848 ? 7.6189 ? 1.2910 ? 0.0000 ? -0.1174 ? 0.2938 ? 0.2330 ? 0.2828 ? -0.2071 ? 0.4364 ? 0.0811 ? -0.2322 ?
0.3245 ?
7 'X-RAY DIFFRACTION' ? refined 17.8872 -32.5471 2.2551 -0.2109 ? -0.0301 ? -0.0556 ? 0.1749 ? -0.2076 ? 0.0717 ? 2.6995 ?
-1.0450 ? 0.3036 ? -2.1065 ? 1.2840 ? 0.0016 ? 0.1094 ? -0.0115 ? -0.0364 ? -0.0317 ? -0.0986 ? -0.0126 ? 0.0885 ? 0.0755 ?
-0.0108 ?
#
loop_
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
1 'X-RAY DIFFRACTION' 1 ? ? A 5 ? ? A 40 ? '{A|5 - 40}'
2 'X-RAY DIFFRACTION' 2 ? ? A 41 ? ? A 46 ? '{A|41 - 46}'
3 'X-RAY DIFFRACTION' 3 ? ? A 47 ? ? A 79 ? '{A|47 - 79}'
4 'X-RAY DIFFRACTION' 4 ? ? A 80 ? ? A 101 ? '{A|80 - 101}'
5 'X-RAY DIFFRACTION' 5 ? ? A 102 ? ? A 114 ? '{A|102 - 114}'
6 'X-RAY DIFFRACTION' 6 ? ? A 115 ? ? A 129 ? '{A|115 - 129}'
7 'X-RAY DIFFRACTION' 7 ? ? B 0 ? ? B 5 ? '{B|0 - 5}'
#
_phasing.method MR
#
_pdbx_entry_details.entry_id 6TON
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 382 ? 7.43 .
2 1 O ? A HOH 383 ? 8.07 .
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 2 ? A GLY 1
2 1 Y 1 A PRO 3 ? A PRO 2
3 1 Y 1 A GLY 4 ? A GLY 3
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
EDO C1 C N N 88
EDO O1 O N N 89
EDO C2 C N N 90
EDO O2 O N N 91
EDO H11 H N N 92
EDO H12 H N N 93
EDO HO1 H N N 94
EDO H21 H N N 95
EDO H22 H N N 96
EDO HO2 H N N 97
GLN N N N N 98
GLN CA C N S 99
GLN C C N N 100
GLN O O N N 101
GLN CB C N N 102
GLN CG C N N 103
GLN CD C N N 104
GLN OE1 O N N 105
GLN NE2 N N N 106
GLN OXT O N N 107
GLN H H N N 108
GLN H2 H N N 109
GLN HA H N N 110
GLN HB2 H N N 111
GLN HB3 H N N 112
GLN HG2 H N N 113
GLN HG3 H N N 114
GLN HE21 H N N 115
GLN HE22 H N N 116
GLN HXT H N N 117
GLU N N N N 118
GLU CA C N S 119
GLU C C N N 120
GLU O O N N 121
GLU CB C N N 122
GLU CG C N N 123
GLU CD C N N 124
GLU OE1 O N N 125
GLU OE2 O N N 126
GLU OXT O N N 127
GLU H H N N 128
GLU H2 H N N 129
GLU HA H N N 130
GLU HB2 H N N 131
GLU HB3 H N N 132
GLU HG2 H N N 133
GLU HG3 H N N 134
GLU HE2 H N N 135
GLU HXT H N N 136
GLY N N N N 137
GLY CA C N N 138
GLY C C N N 139
GLY O O N N 140
GLY OXT O N N 141
GLY H H N N 142
GLY H2 H N N 143
GLY HA2 H N N 144
GLY HA3 H N N 145
GLY HXT H N N 146
HIS N N N N 147
HIS CA C N S 148
HIS C C N N 149
HIS O O N N 150
HIS CB C N N 151
HIS CG C Y N 152
HIS ND1 N Y N 153
HIS CD2 C Y N 154
HIS CE1 C Y N 155
HIS NE2 N Y N 156
HIS OXT O N N 157
HIS H H N N 158
HIS H2 H N N 159
HIS HA H N N 160
HIS HB2 H N N 161
HIS HB3 H N N 162
HIS HD1 H N N 163
HIS HD2 H N N 164
HIS HE1 H N N 165
HIS HE2 H N N 166
HIS HXT H N N 167
HOH O O N N 168
HOH H1 H N N 169
HOH H2 H N N 170
ILE N N N N 171
ILE CA C N S 172
ILE C C N N 173
ILE O O N N 174
ILE CB C N S 175
ILE CG1 C N N 176
ILE CG2 C N N 177
ILE CD1 C N N 178
ILE OXT O N N 179
ILE H H N N 180
ILE H2 H N N 181
ILE HA H N N 182
ILE HB H N N 183
ILE HG12 H N N 184
ILE HG13 H N N 185
ILE HG21 H N N 186
ILE HG22 H N N 187
ILE HG23 H N N 188
ILE HD11 H N N 189
ILE HD12 H N N 190
ILE HD13 H N N 191
ILE HXT H N N 192
LEU N N N N 193
LEU CA C N S 194
LEU C C N N 195
LEU O O N N 196
LEU CB C N N 197
LEU CG C N N 198
LEU CD1 C N N 199
LEU CD2 C N N 200
LEU OXT O N N 201
LEU H H N N 202
LEU H2 H N N 203
LEU HA H N N 204
LEU HB2 H N N 205
LEU HB3 H N N 206
LEU HG H N N 207
LEU HD11 H N N 208
LEU HD12 H N N 209
LEU HD13 H N N 210
LEU HD21 H N N 211
LEU HD22 H N N 212
LEU HD23 H N N 213
LEU HXT H N N 214
LYS N N N N 215
LYS CA C N S 216
LYS C C N N 217
LYS O O N N 218
LYS CB C N N 219
LYS CG C N N 220
LYS CD C N N 221
LYS CE C N N 222
LYS NZ N N N 223
LYS OXT O N N 224
LYS H H N N 225
LYS H2 H N N 226
LYS HA H N N 227
LYS HB2 H N N 228
LYS HB3 H N N 229
LYS HG2 H N N 230
LYS HG3 H N N 231
LYS HD2 H N N 232
LYS HD3 H N N 233
LYS HE2 H N N 234
LYS HE3 H N N 235
LYS HZ1 H N N 236
LYS HZ2 H N N 237
LYS HZ3 H N N 238
LYS HXT H N N 239
MET N N N N 240
MET CA C N S 241
MET C C N N 242
MET O O N N 243
MET CB C N N 244
MET CG C N N 245
MET SD S N N 246
MET CE C N N 247
MET OXT O N N 248
MET H H N N 249
MET H2 H N N 250
MET HA H N N 251
MET HB2 H N N 252
MET HB3 H N N 253
MET HG2 H N N 254
MET HG3 H N N 255
MET HE1 H N N 256
MET HE2 H N N 257
MET HE3 H N N 258
MET HXT H N N 259
NR5 C1 C N N 260
NR5 N2 N N N 261
NR5 N3 N Y N 262
NR5 C4 C N N 263
NR5 C5 C N N 264
NR5 C6 C N N 265
NR5 C7 C Y N 266
NR5 C10 C Y N 267
NR5 C11 C Y N 268
NR5 C13 C Y N 269
NR5 C14 C N N 270
NR5 C15 C N N 271
NR5 C16 C N N 272
NR5 C17 C N N 273
NR5 C19 C N N 274
NR5 C20 C N N 275
NR5 C22 C Y N 276
NR5 C23 C Y N 277
NR5 C24 C Y N 278
NR5 CL CL N N 279
NR5 C12 C Y N 280
NR5 N4 N Y N 281
NR5 N5 N N N 282
NR5 C21 C N N 283
NR5 C18 C N N 284
NR5 O2 O N N 285
NR5 C9 C Y N 286
NR5 C8 C Y N 287
NR5 N N N N 288
NR5 C C N N 289
NR5 N1 N N N 290
NR5 O O N N 291
NR5 C2 C N N 292
NR5 C3 C N N 293
NR5 O1 O N N 294
NR5 H1 H N N 295
NR5 H2 H N N 296
NR5 H3 H N N 297
NR5 H4 H N N 298
NR5 H5 H N N 299
NR5 H6 H N N 300
NR5 H7 H N N 301
NR5 H8 H N N 302
NR5 H9 H N N 303
NR5 H10 H N N 304
NR5 H11 H N N 305
NR5 H12 H N N 306
NR5 H13 H N N 307
NR5 H14 H N N 308
NR5 H15 H N N 309
NR5 H16 H N N 310
NR5 H17 H N N 311
NR5 H18 H N N 312
NR5 H19 H N N 313
NR5 H20 H N N 314
NR5 H21 H N N 315
NR5 H22 H N N 316
NR5 H23 H N N 317
NR5 H24 H N N 318
NR5 H25 H N N 319
NR5 H26 H N N 320
NR5 H27 H N N 321
NR5 H28 H N N 322
NR5 H29 H N N 323
NR5 H30 H N N 324
NR5 H31 H N N 325
NR5 H32 H N N 326
NR5 H33 H N N 327
NR5 H34 H N N 328
NR5 H35 H N N 329
PHE N N N N 330
PHE CA C N S 331
PHE C C N N 332
PHE O O N N 333
PHE CB C N N 334
PHE CG C Y N 335
PHE CD1 C Y N 336
PHE CD2 C Y N 337
PHE CE1 C Y N 338
PHE CE2 C Y N 339
PHE CZ C Y N 340
PHE OXT O N N 341
PHE H H N N 342
PHE H2 H N N 343
PHE HA H N N 344
PHE HB2 H N N 345
PHE HB3 H N N 346
PHE HD1 H N N 347
PHE HD2 H N N 348
PHE HE1 H N N 349
PHE HE2 H N N 350
PHE HZ H N N 351
PHE HXT H N N 352
PRO N N N N 353
PRO CA C N S 354
PRO C C N N 355
PRO O O N N 356
PRO CB C N N 357
PRO CG C N N 358
PRO CD C N N 359
PRO OXT O N N 360
PRO H H N N 361
PRO HA H N N 362
PRO HB2 H N N 363
PRO HB3 H N N 364
PRO HG2 H N N 365
PRO HG3 H N N 366
PRO HD2 H N N 367
PRO HD3 H N N 368
PRO HXT H N N 369
SER N N N N 370
SER CA C N S 371
SER C C N N 372
SER O O N N 373
SER CB C N N 374
SER OG O N N 375
SER OXT O N N 376
SER H H N N 377
SER H2 H N N 378
SER HA H N N 379
SER HB2 H N N 380
SER HB3 H N N 381
SER HG H N N 382
SER HXT H N N 383
THR N N N N 384
THR CA C N S 385
THR C C N N 386
THR O O N N 387
THR CB C N R 388
THR OG1 O N N 389
THR CG2 C N N 390
THR OXT O N N 391
THR H H N N 392
THR H2 H N N 393
THR HA H N N 394
THR HB H N N 395
THR HG1 H N N 396
THR HG21 H N N 397
THR HG22 H N N 398
THR HG23 H N N 399
THR HXT H N N 400
TRP N N N N 401
TRP CA C N S 402
TRP C C N N 403
TRP O O N N 404
TRP CB C N N 405
TRP CG C Y N 406
TRP CD1 C Y N 407
TRP CD2 C Y N 408
TRP NE1 N Y N 409
TRP CE2 C Y N 410
TRP CE3 C Y N 411
TRP CZ2 C Y N 412
TRP CZ3 C Y N 413
TRP CH2 C Y N 414
TRP OXT O N N 415
TRP H H N N 416
TRP H2 H N N 417
TRP HA H N N 418
TRP HB2 H N N 419
TRP HB3 H N N 420
TRP HD1 H N N 421
TRP HE1 H N N 422
TRP HE3 H N N 423
TRP HZ2 H N N 424
TRP HZ3 H N N 425
TRP HH2 H N N 426
TRP HXT H N N 427
TYR N N N N 428
TYR CA C N S 429
TYR C C N N 430
TYR O O N N 431
TYR CB C N N 432
TYR CG C Y N 433
TYR CD1 C Y N 434
TYR CD2 C Y N 435
TYR CE1 C Y N 436
TYR CE2 C Y N 437
TYR CZ C Y N 438
TYR OH O N N 439
TYR OXT O N N 440
TYR H H N N 441
TYR H2 H N N 442
TYR HA H N N 443
TYR HB2 H N N 444
TYR HB3 H N N 445
TYR HD1 H N N 446
TYR HD2 H N N 447
TYR HE1 H N N 448
TYR HE2 H N N 449
TYR HH H N N 450
TYR HXT H N N 451
VAL N N N N 452
VAL CA C N S 453
VAL C C N N 454
VAL O O N N 455
VAL CB C N N 456
VAL CG1 C N N 457
VAL CG2 C N N 458
VAL OXT O N N 459
VAL H H N N 460
VAL H2 H N N 461
VAL HA H N N 462
VAL HB H N N 463
VAL HG11 H N N 464
VAL HG12 H N N 465
VAL HG13 H N N 466
VAL HG21 H N N 467
VAL HG22 H N N 468
VAL HG23 H N N 469
VAL HXT H N N 470
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
EDO C1 O1 sing N N 83
EDO C1 C2 sing N N 84
EDO C1 H11 sing N N 85
EDO C1 H12 sing N N 86
EDO O1 HO1 sing N N 87
EDO C2 O2 sing N N 88
EDO C2 H21 sing N N 89
EDO C2 H22 sing N N 90
EDO O2 HO2 sing N N 91
GLN N CA sing N N 92
GLN N H sing N N 93
GLN N H2 sing N N 94
GLN CA C sing N N 95
GLN CA CB sing N N 96
GLN CA HA sing N N 97
GLN C O doub N N 98
GLN C OXT sing N N 99
GLN CB CG sing N N 100
GLN CB HB2 sing N N 101
GLN CB HB3 sing N N 102
GLN CG CD sing N N 103
GLN CG HG2 sing N N 104
GLN CG HG3 sing N N 105
GLN CD OE1 doub N N 106
GLN CD NE2 sing N N 107
GLN NE2 HE21 sing N N 108
GLN NE2 HE22 sing N N 109
GLN OXT HXT sing N N 110
GLU N CA sing N N 111
GLU N H sing N N 112
GLU N H2 sing N N 113
GLU CA C sing N N 114
GLU CA CB sing N N 115
GLU CA HA sing N N 116
GLU C O doub N N 117
GLU C OXT sing N N 118
GLU CB CG sing N N 119
GLU CB HB2 sing N N 120
GLU CB HB3 sing N N 121
GLU CG CD sing N N 122
GLU CG HG2 sing N N 123
GLU CG HG3 sing N N 124
GLU CD OE1 doub N N 125
GLU CD OE2 sing N N 126
GLU OE2 HE2 sing N N 127
GLU OXT HXT sing N N 128
GLY N CA sing N N 129
GLY N H sing N N 130
GLY N H2 sing N N 131
GLY CA C sing N N 132
GLY CA HA2 sing N N 133
GLY CA HA3 sing N N 134
GLY C O doub N N 135
GLY C OXT sing N N 136
GLY OXT HXT sing N N 137
HIS N CA sing N N 138
HIS N H sing N N 139
HIS N H2 sing N N 140
HIS CA C sing N N 141
HIS CA CB sing N N 142
HIS CA HA sing N N 143
HIS C O doub N N 144
HIS C OXT sing N N 145
HIS CB CG sing N N 146
HIS CB HB2 sing N N 147
HIS CB HB3 sing N N 148
HIS CG ND1 sing Y N 149
HIS CG CD2 doub Y N 150
HIS ND1 CE1 doub Y N 151
HIS ND1 HD1 sing N N 152
HIS CD2 NE2 sing Y N 153
HIS CD2 HD2 sing N N 154
HIS CE1 NE2 sing Y N 155
HIS CE1 HE1 sing N N 156
HIS NE2 HE2 sing N N 157
HIS OXT HXT sing N N 158
HOH O H1 sing N N 159
HOH O H2 sing N N 160
ILE N CA sing N N 161
ILE N H sing N N 162
ILE N H2 sing N N 163
ILE CA C sing N N 164
ILE CA CB sing N N 165
ILE CA HA sing N N 166
ILE C O doub N N 167
ILE C OXT sing N N 168
ILE CB CG1 sing N N 169
ILE CB CG2 sing N N 170
ILE CB HB sing N N 171
ILE CG1 CD1 sing N N 172
ILE CG1 HG12 sing N N 173
ILE CG1 HG13 sing N N 174
ILE CG2 HG21 sing N N 175
ILE CG2 HG22 sing N N 176
ILE CG2 HG23 sing N N 177
ILE CD1 HD11 sing N N 178
ILE CD1 HD12 sing N N 179
ILE CD1 HD13 sing N N 180
ILE OXT HXT sing N N 181
LEU N CA sing N N 182
LEU N H sing N N 183
LEU N H2 sing N N 184
LEU CA C sing N N 185
LEU CA CB sing N N 186
LEU CA HA sing N N 187
LEU C O doub N N 188
LEU C OXT sing N N 189
LEU CB CG sing N N 190
LEU CB HB2 sing N N 191
LEU CB HB3 sing N N 192
LEU CG CD1 sing N N 193
LEU CG CD2 sing N N 194
LEU CG HG sing N N 195
LEU CD1 HD11 sing N N 196
LEU CD1 HD12 sing N N 197
LEU CD1 HD13 sing N N 198
LEU CD2 HD21 sing N N 199
LEU CD2 HD22 sing N N 200
LEU CD2 HD23 sing N N 201
LEU OXT HXT sing N N 202
LYS N CA sing N N 203
LYS N H sing N N 204
LYS N H2 sing N N 205
LYS CA C sing N N 206
LYS CA CB sing N N 207
LYS CA HA sing N N 208
LYS C O doub N N 209
LYS C OXT sing N N 210
LYS CB CG sing N N 211
LYS CB HB2 sing N N 212
LYS CB HB3 sing N N 213
LYS CG CD sing N N 214
LYS CG HG2 sing N N 215
LYS CG HG3 sing N N 216
LYS CD CE sing N N 217
LYS CD HD2 sing N N 218
LYS CD HD3 sing N N 219
LYS CE NZ sing N N 220
LYS CE HE2 sing N N 221
LYS CE HE3 sing N N 222
LYS NZ HZ1 sing N N 223
LYS NZ HZ2 sing N N 224
LYS NZ HZ3 sing N N 225
LYS OXT HXT sing N N 226
MET N CA sing N N 227
MET N H sing N N 228
MET N H2 sing N N 229
MET CA C sing N N 230
MET CA CB sing N N 231
MET CA HA sing N N 232
MET C O doub N N 233
MET C OXT sing N N 234
MET CB CG sing N N 235
MET CB HB2 sing N N 236
MET CB HB3 sing N N 237
MET CG SD sing N N 238
MET CG HG2 sing N N 239
MET CG HG3 sing N N 240
MET SD CE sing N N 241
MET CE HE1 sing N N 242
MET CE HE2 sing N N 243
MET CE HE3 sing N N 244
MET OXT HXT sing N N 245
NR5 C20 C18 sing N N 246
NR5 C21 C18 sing N N 247
NR5 C21 N5 sing N N 248
NR5 C18 C19 sing N N 249
NR5 C18 O2 sing N N 250
NR5 N4 C12 doub Y N 251
NR5 N4 C11 sing Y N 252
NR5 O2 C15 sing N N 253
NR5 C12 C13 sing Y N 254
NR5 N5 C11 sing N N 255
NR5 N5 C14 sing N N 256
NR5 C11 N3 doub Y N 257
NR5 C14 C15 sing N N 258
NR5 C15 C17 sing N N 259
NR5 C15 C16 sing N N 260
NR5 C13 CL sing N N 261
NR5 C13 C10 doub Y N 262
NR5 N3 C10 sing Y N 263
NR5 C10 N2 sing N N 264
NR5 N2 C9 sing N N 265
NR5 C9 C22 doub Y N 266
NR5 C9 C8 sing Y N 267
NR5 C22 C23 sing Y N 268
NR5 C8 C7 doub Y N 269
NR5 C5 C4 sing N N 270
NR5 C23 C24 doub Y N 271
NR5 C6 C4 sing N N 272
NR5 C4 C3 sing N N 273
NR5 C4 O1 sing N N 274
NR5 C7 C24 sing Y N 275
NR5 C7 N1 sing N N 276
NR5 C3 C2 sing N N 277
NR5 C24 N sing N N 278
NR5 N1 C2 sing N N 279
NR5 N1 C1 sing N N 280
NR5 N C sing N N 281
NR5 N C1 sing N N 282
NR5 C1 O doub N N 283
NR5 N2 H1 sing N N 284
NR5 C5 H2 sing N N 285
NR5 C5 H3 sing N N 286
NR5 C5 H4 sing N N 287
NR5 C6 H5 sing N N 288
NR5 C6 H6 sing N N 289
NR5 C6 H7 sing N N 290
NR5 C14 H8 sing N N 291
NR5 C14 H9 sing N N 292
NR5 C16 H10 sing N N 293
NR5 C16 H11 sing N N 294
NR5 C16 H12 sing N N 295
NR5 C17 H13 sing N N 296
NR5 C17 H14 sing N N 297
NR5 C17 H15 sing N N 298
NR5 C19 H16 sing N N 299
NR5 C19 H17 sing N N 300
NR5 C19 H18 sing N N 301
NR5 C20 H19 sing N N 302
NR5 C20 H20 sing N N 303
NR5 C20 H21 sing N N 304
NR5 C22 H22 sing N N 305
NR5 C23 H23 sing N N 306
NR5 C12 H24 sing N N 307
NR5 C21 H25 sing N N 308
NR5 C21 H26 sing N N 309
NR5 C8 H27 sing N N 310
NR5 C H28 sing N N 311
NR5 C H29 sing N N 312
NR5 C H30 sing N N 313
NR5 C2 H31 sing N N 314
NR5 C2 H32 sing N N 315
NR5 C3 H33 sing N N 316
NR5 C3 H34 sing N N 317
NR5 O1 H35 sing N N 318
PHE N CA sing N N 319
PHE N H sing N N 320
PHE N H2 sing N N 321
PHE CA C sing N N 322
PHE CA CB sing N N 323
PHE CA HA sing N N 324
PHE C O doub N N 325
PHE C OXT sing N N 326
PHE CB CG sing N N 327
PHE CB HB2 sing N N 328
PHE CB HB3 sing N N 329
PHE CG CD1 doub Y N 330
PHE CG CD2 sing Y N 331
PHE CD1 CE1 sing Y N 332
PHE CD1 HD1 sing N N 333
PHE CD2 CE2 doub Y N 334
PHE CD2 HD2 sing N N 335
PHE CE1 CZ doub Y N 336
PHE CE1 HE1 sing N N 337
PHE CE2 CZ sing Y N 338
PHE CE2 HE2 sing N N 339
PHE CZ HZ sing N N 340
PHE OXT HXT sing N N 341
PRO N CA sing N N 342
PRO N CD sing N N 343
PRO N H sing N N 344
PRO CA C sing N N 345
PRO CA CB sing N N 346
PRO CA HA sing N N 347
PRO C O doub N N 348
PRO C OXT sing N N 349
PRO CB CG sing N N 350
PRO CB HB2 sing N N 351
PRO CB HB3 sing N N 352
PRO CG CD sing N N 353
PRO CG HG2 sing N N 354
PRO CG HG3 sing N N 355
PRO CD HD2 sing N N 356
PRO CD HD3 sing N N 357
PRO OXT HXT sing N N 358
SER N CA sing N N 359
SER N H sing N N 360
SER N H2 sing N N 361
SER CA C sing N N 362
SER CA CB sing N N 363
SER CA HA sing N N 364
SER C O doub N N 365
SER C OXT sing N N 366
SER CB OG sing N N 367
SER CB HB2 sing N N 368
SER CB HB3 sing N N 369
SER OG HG sing N N 370
SER OXT HXT sing N N 371
THR N CA sing N N 372
THR N H sing N N 373
THR N H2 sing N N 374
THR CA C sing N N 375
THR CA CB sing N N 376
THR CA HA sing N N 377
THR C O doub N N 378
THR C OXT sing N N 379
THR CB OG1 sing N N 380
THR CB CG2 sing N N 381
THR CB HB sing N N 382
THR OG1 HG1 sing N N 383
THR CG2 HG21 sing N N 384
THR CG2 HG22 sing N N 385
THR CG2 HG23 sing N N 386
THR OXT HXT sing N N 387
TRP N CA sing N N 388
TRP N H sing N N 389
TRP N H2 sing N N 390
TRP CA C sing N N 391
TRP CA CB sing N N 392
TRP CA HA sing N N 393
TRP C O doub N N 394
TRP C OXT sing N N 395
TRP CB CG sing N N 396
TRP CB HB2 sing N N 397
TRP CB HB3 sing N N 398
TRP CG CD1 doub Y N 399
TRP CG CD2 sing Y N 400
TRP CD1 NE1 sing Y N 401
TRP CD1 HD1 sing N N 402
TRP CD2 CE2 doub Y N 403
TRP CD2 CE3 sing Y N 404
TRP NE1 CE2 sing Y N 405
TRP NE1 HE1 sing N N 406
TRP CE2 CZ2 sing Y N 407
TRP CE3 CZ3 doub Y N 408
TRP CE3 HE3 sing N N 409
TRP CZ2 CH2 doub Y N 410
TRP CZ2 HZ2 sing N N 411
TRP CZ3 CH2 sing Y N 412
TRP CZ3 HZ3 sing N N 413
TRP CH2 HH2 sing N N 414
TRP OXT HXT sing N N 415
TYR N CA sing N N 416
TYR N H sing N N 417
TYR N H2 sing N N 418
TYR CA C sing N N 419
TYR CA CB sing N N 420
TYR CA HA sing N N 421
TYR C O doub N N 422
TYR C OXT sing N N 423
TYR CB CG sing N N 424
TYR CB HB2 sing N N 425
TYR CB HB3 sing N N 426
TYR CG CD1 doub Y N 427
TYR CG CD2 sing Y N 428
TYR CD1 CE1 sing Y N 429
TYR CD1 HD1 sing N N 430
TYR CD2 CE2 doub Y N 431
TYR CD2 HD2 sing N N 432
TYR CE1 CZ doub Y N 433
TYR CE1 HE1 sing N N 434
TYR CE2 CZ sing Y N 435
TYR CE2 HE2 sing N N 436
TYR CZ OH sing N N 437
TYR OH HH sing N N 438
TYR OXT HXT sing N N 439
VAL N CA sing N N 440
VAL N H sing N N 441
VAL N H2 sing N N 442
VAL CA C sing N N 443
VAL CA CB sing N N 444
VAL CA HA sing N N 445
VAL C O doub N N 446
VAL C OXT sing N N 447
VAL CB CG1 sing N N 448
VAL CB CG2 sing N N 449
VAL CB HB sing N N 450
VAL CG1 HG11 sing N N 451
VAL CG1 HG12 sing N N 452
VAL CG1 HG13 sing N N 453
VAL CG2 HG21 sing N N 454
VAL CG2 HG22 sing N N 455
VAL CG2 HG23 sing N N 456
VAL OXT HXT sing N N 457
#
_pdbx_audit_support.funding_organization 'Cancer Research UK'
_pdbx_audit_support.country 'United Kingdom'
_pdbx_audit_support.grant_number C309/A11566
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id NR5
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id NR5
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3BIM
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 6TON
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.014814
_atom_sites.fract_transf_matrix[1][2] 0.008553
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017106
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.005881
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
CL
N
O
S
#
loop_