data_6TOV # _entry.id 6TOV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.353 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TOV pdb_00006tov 10.2210/pdb6tov/pdb WWPDB D_1292105405 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 1AA5 unspecified PDB . 1GHG unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TOV _pdbx_database_status.recvd_initial_deposition_date 2019-12-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Belviso, B.D.' 1 0000-0003-2880-1064 'Carrozzini, B.' 2 0000-0001-9052-0074 'Caliandro, R.' 3 0000-0002-0368-4925 'Altomare, C.D.' 4 0000-0001-5016-5805 'Bolognino, I.' 5 0000-0002-5891-7140 'Cellamare, S.' 6 0000-0003-3765-7842 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Separations _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Enantiomeric Separation and Molecular Modelling of Bioactive 4-Aryl-3,4-dihydropyrimidin-2(1H)-one Ester Derivatives on Teicoplanin-Based Chiral Stationary Phase ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/separations9010007 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bolognino, I.' 1 0000-0002-5891-7140 primary 'Carrieri, A.' 2 ? primary 'Purgatorio, R.' 3 ? primary 'Catto, M.' 4 ? primary 'Caliandro, R.' 5 0000-0002-0368-4925 primary 'Carrozzini, B.' 6 0000-0001-9052-0074 primary 'Belviso, B.D.' 7 0000-0003-2880-1064 primary 'Majellaro, M.' 8 ? primary 'Sotelo, E.' 9 ? primary 'Cellamare, S.' 10 0000-0003-3765-7842 primary 'Altomare, C.D.' 11 0000-0001-5016-5805 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 123.340 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6TOV _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.722 _cell.length_a_esd ? _cell.length_b 13.113 _cell.length_b_esd ? _cell.length_c 21.717 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Teicoplanin Aglycone' 1206.984 1 ? ? ? ? 2 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 5 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GHP)(3MY)(3FG)(GHP)(GHP)(OMY)(3FG)' _entity_poly.pdbx_seq_one_letter_code_can GYXGGYX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GHP n 1 2 3MY n 1 3 3FG n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'The peptide is synthetically generated by starting from teicoplanine' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6TOV _struct_ref.pdbx_db_accession 6TOV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TOV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6TOV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 7 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 3MY 'D-peptide linking' n 3-chloro-D-tyrosine ? 'C9 H10 Cl N O3' 215.634 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TOV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;teicoplanine=10mg/ml sodium acetate 1.2M, sodium cacodylate 100mM ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-07-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7293 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.7293 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6TOV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.7670 _reflns.d_resolution_low 18.143 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9030 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.900 _reflns.pdbx_Rmerge_I_obs 0.133 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.137 _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 0.770 0.790 ? ? 1587 ? ? ? 209 28.900 ? ? ? ? 0.677 ? ? ? ? ? ? ? ? 7.600 ? ? ? 2.400 0.726 0.256 ? 1 1 0.797 ? ? 3.430 18.140 ? ? 2014 ? ? ? 133 99.500 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 15.100 ? ? ? 35.900 0.084 0.021 ? 2 1 0.997 ? ? # _refine.aniso_B[1][1] 0.0400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0300 _refine.aniso_B[2][2] -0.1300 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0200 _refine.B_iso_max 27.310 _refine.B_iso_mean 3.8200 _refine.B_iso_min 2.400 _refine.correlation_coeff_Fo_to_Fc 0.9890 _refine.correlation_coeff_Fo_to_Fc_free 0.9860 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TOV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.767 _refine.ls_d_res_low 18.143 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8642 _refine.ls_number_reflns_R_free 388 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.7800 _refine.ls_percent_reflns_R_free 4.3000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.0972 _refine.ls_R_factor_R_free 0.1143 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0966 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0100 _refine.pdbx_overall_ESU_R_Free 0.0110 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.2260 _refine.overall_SU_ML 0.0070 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 0.767 _refine_hist.d_res_low 18.143 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 103 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 2 _refine_hist.pdbx_B_iso_mean_ligand 3.86 _refine_hist.pdbx_B_iso_mean_solvent 5.79 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.041 0.020 110 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.011 0.021 78 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.153 2.594 130 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.159 2.429 162 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 9.380 5.000 1 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 0.195 0.200 8 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.048 0.022 83 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.005 0.022 29 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 4.705 3.000 188 ? r_rigid_bond_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 0.767 _refine_ls_shell.d_res_low 0.7870 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_R_work 195 _refine_ls_shell.percent_reflns_obs 28.4400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2740 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1880 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6TOV _struct.title 'Crystal Structure of Teicoplanin Aglycone' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TOV _struct_keywords.text 'peptidoglycan polymerization inhibitor, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GHP 1 C ? ? ? 1_555 A 3MY 2 N ? ? A GHP 1 A 3MY 2 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale2 covale one ? A GHP 1 C3 ? ? ? 1_555 A 3FG 3 OD2 ? ? A GHP 1 A 3FG 3 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale3 covale both ? A 3MY 2 C ? ? ? 1_555 A 3FG 3 N ? ? A 3MY 2 A 3FG 3 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale4 covale none ? A 3MY 2 OBD ? ? ? 1_555 A GHP 4 C3 ? ? A 3MY 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale5 covale both ? A 3FG 3 C ? ? ? 1_555 A GHP 4 N ? ? A 3FG 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale6 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale7 covale none ? A GHP 4 C5 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale9 covale none ? A GHP 5 C5 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.540 ? ? covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.347 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GHP _struct_mon_prot_cis.label_seq_id 5 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GHP _struct_mon_prot_cis.auth_seq_id 5 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 OMY _struct_mon_prot_cis.pdbx_label_seq_id_2 6 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 OMY _struct_mon_prot_cis.pdbx_auth_seq_id_2 6 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.36 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DMS 101 ? 5 'binding site for residue DMS A 101' AC2 Software A DMS 102 ? 1 'binding site for residue DMS A 102' AC4 Software A DMS 104 ? 2 'binding site for residue DMS A 104' AC5 Software A DMS 105 ? 2 'binding site for residue DMS A 105' AC6 Software ? ? ? ? 13 'binding site for residues GHP A 1 and GHP A 4' AC7 Software ? ? ? ? 13 'binding site for residues GHP A 1 and OMY A 2' AC8 Software ? ? ? ? 11 'binding site for residues GHP A 1 and 3FG A 7' AC9 Software ? ? ? ? 16 'binding site for residues OMY A 2 and GHP A 4' AD1 Software ? ? ? ? 16 'binding site for residues OMY A 2 and 3FG A 7' AD2 Software ? ? ? ? 12 'binding site for residues 3MY A 3 and 3FG A 6' AD3 Software ? ? ? ? 14 'binding site for residues 3MY A 3 and GHP A 5' AD4 Software ? ? ? ? 12 'binding site for residues 3MY A 3 and GHP A 4' AD5 Software ? ? ? ? 11 'binding site for residues GHP A 4 and 3FG A 6' AD6 Software ? ? ? ? 13 'binding site for residues GHP A 5 and 3FG A 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH G . ? HOH A 205 . ? 3_445 ? 2 AC1 5 DMS E . ? DMS A 104 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH A 208 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 201 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 211 . ? 1_555 ? 6 AC2 1 HOH G . ? HOH A 206 . ? 1_555 ? 7 AC4 2 DMS B . ? DMS A 101 . ? 1_555 ? 8 AC4 2 HOH G . ? HOH A 211 . ? 1_555 ? 9 AC5 2 HOH G . ? HOH A 206 . ? 4_546 ? 10 AC5 2 HOH G . ? HOH A 213 . ? 1_555 ? 11 AC6 13 HOH G . ? HOH A 214 . ? 1_555 ? 12 AC6 13 HOH G . ? HOH A 204 . ? 1_555 ? 13 AC6 13 HOH G . ? HOH A 202 . ? 1_555 ? 14 AC6 13 HOH G . ? HOH A 212 . ? 2_657 ? 15 AC6 13 HOH G . ? HOH A 212 . ? 1_555 ? 16 AC6 13 DMS C . ? DMS A 102 . ? 1_555 ? 17 AC6 13 DMS C . ? DMS A 102 . ? 1_545 ? 18 AC6 13 DMS D . ? DMS A 103 . ? 4_546 ? 19 AC6 13 DMS D . ? DMS A 103 . ? 1_555 ? 20 AC6 13 DMS E . ? DMS A 104 . ? 3_545 ? 21 AC6 13 DMS F . ? DMS A 105 . ? 1_555 ? 22 AC6 13 HOH G . ? HOH A 206 . ? 4_546 ? 23 AC6 13 HOH G . ? HOH A 213 . ? 1_555 ? 24 AC7 13 HOH G . ? HOH A 204 . ? 1_555 ? 25 AC7 13 HOH G . ? HOH A 202 . ? 2_647 ? 26 AC7 13 HOH G . ? HOH A 212 . ? 1_545 ? 27 AC7 13 HOH G . ? HOH A 212 . ? 2_647 ? 28 AC7 13 HOH G . ? HOH A 210 . ? 1_555 ? 29 AC7 13 HOH G . ? HOH A 205 . ? 1_555 ? 30 AC7 13 DMS B . ? DMS A 101 . ? 3_555 ? 31 AC7 13 DMS C . ? DMS A 102 . ? 1_545 ? 32 AC7 13 DMS D . ? DMS A 103 . ? 4_546 ? 33 AC7 13 DMS E . ? DMS A 104 . ? 3_555 ? 34 AC7 13 DMS E . ? DMS A 104 . ? 3_545 ? 35 AC7 13 DMS F . ? DMS A 105 . ? 1_555 ? 36 AC7 13 HOH G . ? HOH A 206 . ? 4_546 ? 37 AC8 11 HOH G . ? HOH A 214 . ? 1_555 ? 38 AC8 11 HOH G . ? HOH A 204 . ? 1_555 ? 39 AC8 11 HOH G . ? HOH A 209 . ? 1_555 ? 40 AC8 11 HOH G . ? HOH A 205 . ? 1_555 ? 41 AC8 11 DMS B . ? DMS A 101 . ? 4_556 ? 42 AC8 11 DMS C . ? DMS A 102 . ? 1_545 ? 43 AC8 11 DMS D . ? DMS A 103 . ? 4_546 ? 44 AC8 11 DMS E . ? DMS A 104 . ? 3_545 ? 45 AC8 11 DMS F . ? DMS A 105 . ? 1_555 ? 46 AC8 11 HOH G . ? HOH A 206 . ? 4_546 ? 47 AC8 11 HOH G . ? HOH A 201 . ? 4_556 ? 48 AC9 16 HOH G . ? HOH A 202 . ? 2_647 ? 49 AC9 16 HOH G . ? HOH A 202 . ? 1_555 ? 50 AC9 16 HOH G . ? HOH A 212 . ? 2_647 ? 51 AC9 16 HOH G . ? HOH A 212 . ? 2_657 ? 52 AC9 16 HOH G . ? HOH A 212 . ? 1_545 ? 53 AC9 16 HOH G . ? HOH A 212 . ? 1_555 ? 54 AC9 16 HOH G . ? HOH A 210 . ? 1_555 ? 55 AC9 16 HOH G . ? HOH A 205 . ? 1_555 ? 56 AC9 16 DMS B . ? DMS A 101 . ? 3_555 ? 57 AC9 16 DMS C . ? DMS A 102 . ? 1_555 ? 58 AC9 16 DMS C . ? DMS A 102 . ? 1_545 ? 59 AC9 16 DMS D . ? DMS A 103 . ? 1_555 ? 60 AC9 16 DMS E . ? DMS A 104 . ? 3_545 ? 61 AC9 16 DMS E . ? DMS A 104 . ? 3_555 ? 62 AC9 16 DMS F . ? DMS A 105 . ? 1_555 ? 63 AC9 16 HOH G . ? HOH A 213 . ? 1_555 ? 64 AD1 16 HOH G . ? HOH A 203 . ? 1_555 ? 65 AD1 16 HOH G . ? HOH A 204 . ? 1_555 ? 66 AD1 16 HOH G . ? HOH A 202 . ? 2_647 ? 67 AD1 16 HOH G . ? HOH A 212 . ? 2_647 ? 68 AD1 16 HOH G . ? HOH A 212 . ? 1_545 ? 69 AD1 16 HOH G . ? HOH A 209 . ? 1_555 ? 70 AD1 16 HOH G . ? HOH A 210 . ? 1_555 ? 71 AD1 16 HOH G . ? HOH A 205 . ? 1_555 ? 72 AD1 16 DMS B . ? DMS A 101 . ? 4_556 ? 73 AD1 16 DMS B . ? DMS A 101 . ? 3_555 ? 74 AD1 16 DMS C . ? DMS A 102 . ? 1_545 ? 75 AD1 16 DMS E . ? DMS A 104 . ? 3_545 ? 76 AD1 16 DMS E . ? DMS A 104 . ? 3_555 ? 77 AD1 16 DMS F . ? DMS A 105 . ? 1_555 ? 78 AD1 16 HOH G . ? HOH A 206 . ? 4_546 ? 79 AD1 16 HOH G . ? HOH A 201 . ? 4_556 ? 80 AD2 12 HOH G . ? HOH A 202 . ? 1_555 ? 81 AD2 12 HOH G . ? HOH A 202 . ? 1_545 ? 82 AD2 12 HOH G . ? HOH A 207 . ? 4_547 ? 83 AD2 12 HOH G . ? HOH A 207 . ? 1_555 ? 84 AD2 12 HOH G . ? HOH A 210 . ? 2_657 ? 85 AD2 12 DMS B . ? DMS A 101 . ? 4_557 ? 86 AD2 12 DMS B . ? DMS A 101 . ? 1_555 ? 87 AD2 12 DMS C . ? DMS A 102 . ? 1_545 ? 88 AD2 12 DMS D . ? DMS A 103 . ? 1_555 ? 89 AD2 12 DMS E . ? DMS A 104 . ? 3_545 ? 90 AD2 12 DMS E . ? DMS A 104 . ? 4_557 ? 91 AD2 12 HOH G . ? HOH A 211 . ? 3_545 ? 92 AD3 14 HOH G . ? HOH A 203 . ? 1_555 ? 93 AD3 14 HOH G . ? HOH A 214 . ? 2_667 ? 94 AD3 14 HOH G . ? HOH A 215 . ? 1_555 ? 95 AD3 14 HOH G . ? HOH A 207 . ? 1_555 ? 96 AD3 14 DMS B . ? DMS A 101 . ? 4_557 ? 97 AD3 14 DMS B . ? DMS A 101 . ? 1_555 ? 98 AD3 14 DMS C . ? DMS A 102 . ? 1_545 ? 99 AD3 14 DMS C . ? DMS A 102 . ? 1_555 ? 100 AD3 14 DMS D . ? DMS A 103 . ? 1_555 ? 101 AD3 14 DMS E . ? DMS A 104 . ? 3_545 ? 102 AD3 14 DMS E . ? DMS A 104 . ? 1_555 ? 103 AD3 14 DMS E . ? DMS A 104 . ? 4_557 ? 104 AD3 14 DMS F . ? DMS A 105 . ? 4_546 ? 105 AD3 14 HOH G . ? HOH A 211 . ? 3_545 ? 106 AD4 12 HOH G . ? HOH A 202 . ? 1_555 ? 107 AD4 12 HOH G . ? HOH A 212 . ? 2_657 ? 108 AD4 12 HOH G . ? HOH A 212 . ? 1_555 ? 109 AD4 12 HOH G . ? HOH A 207 . ? 1_555 ? 110 AD4 12 DMS B . ? DMS A 101 . ? 4_557 ? 111 AD4 12 DMS C . ? DMS A 102 . ? 1_555 ? 112 AD4 12 DMS C . ? DMS A 102 . ? 1_545 ? 113 AD4 12 DMS D . ? DMS A 103 . ? 1_555 ? 114 AD4 12 DMS E . ? DMS A 104 . ? 3_545 ? 115 AD4 12 DMS E . ? DMS A 104 . ? 4_557 ? 116 AD4 12 HOH G . ? HOH A 213 . ? 1_555 ? 117 AD4 12 HOH G . ? HOH A 211 . ? 3_545 ? 118 AD5 11 HOH G . ? HOH A 202 . ? 1_545 ? 119 AD5 11 HOH G . ? HOH A 202 . ? 1_555 ? 120 AD5 11 HOH G . ? HOH A 212 . ? 2_657 ? 121 AD5 11 HOH G . ? HOH A 212 . ? 1_555 ? 122 AD5 11 HOH G . ? HOH A 207 . ? 4_547 ? 123 AD5 11 HOH G . ? HOH A 210 . ? 2_657 ? 124 AD5 11 DMS B . ? DMS A 101 . ? 1_555 ? 125 AD5 11 DMS C . ? DMS A 102 . ? 1_555 ? 126 AD5 11 DMS C . ? DMS A 102 . ? 1_545 ? 127 AD5 11 DMS D . ? DMS A 103 . ? 1_555 ? 128 AD5 11 HOH G . ? HOH A 213 . ? 1_555 ? 129 AD6 13 HOH G . ? HOH A 203 . ? 1_555 ? 130 AD6 13 HOH G . ? HOH A 214 . ? 2_667 ? 131 AD6 13 HOH G . ? HOH A 204 . ? 4_556 ? 132 AD6 13 HOH G . ? HOH A 215 . ? 1_555 ? 133 AD6 13 HOH G . ? HOH A 207 . ? 4_547 ? 134 AD6 13 HOH G . ? HOH A 210 . ? 2_657 ? 135 AD6 13 DMS B . ? DMS A 101 . ? 1_555 ? 136 AD6 13 DMS C . ? DMS A 102 . ? 1_555 ? 137 AD6 13 DMS C . ? DMS A 102 . ? 1_545 ? 138 AD6 13 DMS D . ? DMS A 103 . ? 1_555 ? 139 AD6 13 DMS E . ? DMS A 104 . ? 4_557 ? 140 AD6 13 DMS E . ? DMS A 104 . ? 1_555 ? 141 AD6 13 DMS F . ? DMS A 105 . ? 4_546 ? # _atom_sites.entry_id 6TOV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.027994 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.018415 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.076260 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.055117 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 CL 11.460 0.010 7.196 1.166 6.255 18.519 1.645 47.778 -9.338 H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.056 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GHP 1 1 5 GHP GHP A . n A 1 2 3MY 2 2 3 3MY 3MY A . n A 1 3 3FG 3 3 6 3FG 3FG A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 1 GHP GHP A . n A 1 6 OMY 6 6 2 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS 1 101 1 DMS DMS A . C 2 DMS 1 102 2 DMS DMS A . D 2 DMS 1 103 3 DMS DMS A . E 2 DMS 1 104 4 DMS DMS A . F 2 DMS 1 105 5 DMS DMS A . G 3 HOH 1 201 24 HOH HOH A . G 3 HOH 2 202 5 HOH HOH A . G 3 HOH 3 203 1 HOH HOH A . G 3 HOH 4 204 3 HOH HOH A . G 3 HOH 5 205 21 HOH HOH A . G 3 HOH 6 206 8 HOH HOH A . G 3 HOH 7 207 17 HOH HOH A . G 3 HOH 8 208 16 HOH HOH A . G 3 HOH 9 209 12 HOH HOH A . G 3 HOH 10 210 18 HOH HOH A . G 3 HOH 11 211 25 HOH HOH A . G 3 HOH 12 212 10 HOH HOH A . G 3 HOH 13 213 23 HOH HOH A . G 3 HOH 14 214 2 HOH HOH A . G 3 HOH 15 215 11 HOH HOH A . G 3 HOH 16 216 7 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_000210 _pdbx_molecule_features.name 'Teicoplanin Aglycone' _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;TEICOPLANIN AGLYCON IS THE NONSUGAR COMPONENT OF TEICOPLANIN, CONSISTING OF THE TETRACYCLIC HEPTAPEPTIDE ONLY. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000210 _pdbx_molecule.asym_id A # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 680 ? 1 MORE 8 ? 1 'SSA (A^2)' 1570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 212 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-15 2 'Structure model' 1 1 2022-01-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.pdbx_database_id_DOI' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation.year' 6 2 'Structure model' '_database_2.pdbx_DOI' 7 2 'Structure model' '_database_2.pdbx_database_accession' 8 2 'Structure model' '_struct_conn.pdbx_dist_value' 9 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0253 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? Sir2014 ? ? ? . 4 # _pdbx_entry_details.entry_id 6TOV _pdbx_entry_details.compound_details ;TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. HERE, TEICOPLANIN AGLYCON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIMETHYL SULFOXIDE' DMS 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details PISA #