HEADER RNA 13-DEC-19 6TPH TITLE STRUCTURE OF A PROTEIN-RNA COMPLEX BY SSNMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L7AE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LARGE RIBOSOMAL SUBUNIT PROTEIN EL8,RIBOSOMAL PROTEIN L8E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (26-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: RPL7AE, PF1367; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 10 ORGANISM_TAXID: 2261; SOURCE 11 OTHER_DETAILS: IN VITRO TRANSCRIPTION KEYWDS SOLID-STATE RNA, PROTEIN-RNA COMPLEX, STRUCTURE DETERMINATION, PRE, KEYWDS 2 RNA EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR A.MUMDOOH,A.MARCHANKA,T.CARLOMAGNO REVDAT 6 19-JUN-24 6TPH 1 REMARK REVDAT 5 14-JUN-23 6TPH 1 REMARK REVDAT 4 22-APR-20 6TPH 1 JRNL REVDAT 3 11-MAR-20 6TPH 1 JRNL REVDAT 2 19-FEB-20 6TPH 1 JRNL REVDAT 1 12-FEB-20 6TPH 0 JRNL AUTH M.AHMED,A.MARCHANKA,T.CARLOMAGNO JRNL TITL STRUCTURE OF A PROTEIN-RNA COMPLEX BY SOLID-STATE NMR JRNL TITL 2 SPECTROSCOPY. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 6866 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32023357 JRNL DOI 10.1002/ANIE.201915465 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 10 STRUCTURES WITH BEST HADDOCK SCORE REMARK 3 WERE SUBJECTED TO 15 NS OF MD SIMULATION. REMARK 4 REMARK 4 6TPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105613. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 265; 260 REMARK 210 PH : 7.6; 7.6 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : 1 BAR; 1 BAR REMARK 210 SAMPLE CONTENTS : 4 MG/ML [U-99% 13C; U-99% 15N] REMARK 210 50S RIBOSOMAL PROTEIN L7AE, REMARK 210 SOLID; 8 MG/ML [U-99% 13C; U-99% REMARK 210 15N] 50S RIBOSOMAL PROTEIN L7AE, REMARK 210 5 MG/ML RNA (26-MER), SOLID; 4 REMARK 210 MG/ML [U-99% 13C; U-99% 15N] 50S REMARK 210 RIBOSOMAL PROTEIN L7AE, 12 MG/ML REMARK 210 50S RIBOSOMAL PROTEIN L7AE, 10 REMARK 210 MG/ML RNA (26-MER), SOLID; 16 MG/ REMARK 210 ML 50S RIBOSOMAL PROTEIN L7AE, 2 REMARK 210 MG/ML [U-13C; U-15N]-ADE RNA (26- REMARK 210 MER), 8 MG/ML RNA (26-MER), REMARK 210 SOLID; 16 MG/ML 50S RIBOSOMAL REMARK 210 PROTEIN L7AE, 2 MG/ML [U-13C; U- REMARK 210 15N]-URA RNA (26-MER), 8 MG/ML REMARK 210 RNA (26-MER), SOLID; 4 MG/ML [U- REMARK 210 99% 13C; U-99% 15N] 50S REMARK 210 RIBOSOMAL PROTEIN L7AE, 12 MG/ML REMARK 210 50S RIBOSOMAL PROTEIN L7AE, 10 REMARK 210 MG/ML RNA (26-MER), SOLID; 16 MG/ REMARK 210 ML 50S RIBOSOMAL PROTEIN L7AE, 2 REMARK 210 MG/ML [U-13C; U-15N]-ADE RNA (26- REMARK 210 MER), 8 MG/ML RNA (26-MER), REMARK 210 SOLID; 16 MG/ML 50S RIBOSOMAL REMARK 210 PROTEIN L7AE, 2 MG/ML [U-13C; U- REMARK 210 15N]-URA RNA (26-MER), 8 MG/ML REMARK 210 RNA (26-MER), SOLID; 4 MG/ML [U- REMARK 210 99% 13C; U-99% 15N] 50S REMARK 210 RIBOSOMAL PROTEIN L7AE, 12 MG/ML REMARK 210 50S RIBOSOMAL PROTEIN L7AE, 10 REMARK 210 MG/ML RNA (26-MER), SOLID; 16 MG/ REMARK 210 ML 50S RIBOSOMAL PROTEIN L7AE, 2 REMARK 210 MG/ML [U-13C; U-15N]-ADE RNA (26- REMARK 210 MER), 8 MG/ML RNA (26-MER), REMARK 210 SOLID; 16 MG/ML 50S RIBOSOMAL REMARK 210 PROTEIN L7AE, 2 MG/ML [U-13C; U- REMARK 210 15N]-URA RNA (26-MER), 8 MG/L REMARK 210 RNA (26-MER), SOLID REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NCA; 2D NCO; 2D 13C,13C DARR; REMARK 210 3D NCACX; 3D NCOCX; 3D CANCO; 2D REMARK 210 13C,13C SPC53 REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : HADDOCK, CARA, TOPSPIN REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 G B 1 REMARK 465 U B 25 REMARK 465 C B 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 C B 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 78 CG TYR A 78 CD1 0.079 REMARK 500 1 ARG A 109 CZ ARG A 109 NH2 -0.082 REMARK 500 1 U B 3 N1 U B 3 C6 0.058 REMARK 500 1 G B 4 C2' G B 4 C1' -0.061 REMARK 500 1 G B 4 C5 G B 4 N7 0.038 REMARK 500 1 A B 5 N3 A B 5 C4 0.036 REMARK 500 1 A B 5 C5 A B 5 N7 0.055 REMARK 500 1 G B 6 C6 G B 6 N1 -0.047 REMARK 500 1 G B 6 C8 G B 6 N9 -0.064 REMARK 500 1 C B 7 C2' C B 7 C1' -0.049 REMARK 500 1 C B 7 O4' C B 7 C4' -0.090 REMARK 500 1 U B 8 C2' U B 8 C1' 0.071 REMARK 500 1 U B 8 N1 U B 8 C2 0.057 REMARK 500 1 C B 9 O3' G B 10 P -0.076 REMARK 500 1 G B 10 N1 G B 10 C2 -0.061 REMARK 500 1 G B 10 C5 G B 10 N7 0.044 REMARK 500 1 A B 11 O4' A B 11 C1' 0.075 REMARK 500 1 A B 11 C5 A B 11 N7 0.061 REMARK 500 1 A B 11 C6 A B 11 N6 -0.054 REMARK 500 1 A B 12 C2' A B 12 C1' -0.064 REMARK 500 1 A B 12 C4 A B 12 C5 -0.064 REMARK 500 1 A B 12 C5 A B 12 C6 0.056 REMARK 500 1 A B 13 O5' A B 13 C5' -0.065 REMARK 500 1 G B 14 N1 G B 14 C2 0.051 REMARK 500 1 G B 14 N7 G B 14 C8 0.047 REMARK 500 1 A B 15 N7 A B 15 C8 -0.084 REMARK 500 1 G B 16 C5' G B 16 C4' 0.089 REMARK 500 1 G B 16 C5 G B 16 N7 0.043 REMARK 500 1 C B 17 C5' C B 17 C4' 0.085 REMARK 500 1 C B 17 C4 C B 17 C5 0.051 REMARK 500 1 A B 18 N9 A B 18 C4 0.036 REMARK 500 1 A B 19 C6 A B 19 N1 -0.046 REMARK 500 1 A B 19 C5 A B 19 N7 0.059 REMARK 500 1 A B 19 O3' U B 20 P -0.095 REMARK 500 1 U B 20 C2 U B 20 N3 0.064 REMARK 500 1 G B 21 C2' G B 21 C1' -0.064 REMARK 500 1 G B 21 N3 G B 21 C4 0.054 REMARK 500 1 A B 22 C2' A B 22 O2' 0.071 REMARK 500 1 A B 22 C2 A B 22 N3 -0.070 REMARK 500 1 A B 22 C6 A B 22 N1 -0.052 REMARK 500 1 A B 22 O3' U B 23 P -0.080 REMARK 500 1 U B 23 C5 U B 23 C6 0.062 REMARK 500 1 G B 24 C2 G B 24 N2 -0.086 REMARK 500 2 GLU A 72 CD GLU A 72 OE2 -0.089 REMARK 500 2 G B 4 C1' G B 4 N9 0.094 REMARK 500 2 G B 4 C6 G B 4 O6 0.056 REMARK 500 2 A B 5 C2' A B 5 O2' 0.067 REMARK 500 2 G B 6 N3 G B 6 C4 0.043 REMARK 500 2 G B 6 N7 G B 6 C8 0.037 REMARK 500 2 C B 7 C4 C B 7 N4 -0.106 REMARK 500 REMARK 500 THIS ENTRY HAS 398 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 7 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 VAL A 24 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 1 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 1 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 1 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 1 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 ASP A 57 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 ASP A 57 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 1 ASP A 59 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 1 PRO A 60 N - CD - CG ANGL. DEV. = 7.7 DEGREES REMARK 500 1 GLU A 61 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 1 TYR A 80 CZ - CE2 - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 VAL A 81 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 1 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 C B 2 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 1 C B 2 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 C B 2 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 C B 2 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 C B 2 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 1 U B 3 C5' - C4' - O4' ANGL. DEV. = 7.1 DEGREES REMARK 500 1 U B 3 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 G B 4 C4 - C5 - C6 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 G B 4 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 G B 4 N3 - C4 - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 G B 4 C6 - C5 - N7 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 G B 4 N3 - C2 - N2 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 G B 4 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 A B 5 O4' - C4' - C3' ANGL. DEV. = 5.4 DEGREES REMARK 500 1 A B 5 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES REMARK 500 1 A B 5 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 1 A B 5 N1 - C2 - N3 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 A B 5 C4 - C5 - C6 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 A B 5 C5 - C6 - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 A B 5 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A B 5 C6 - C5 - N7 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 A B 5 N1 - C6 - N6 ANGL. DEV. = -9.6 DEGREES REMARK 500 1 A B 5 C5 - C6 - N6 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 G B 6 C5' - C4' - O4' ANGL. DEV. = 6.4 DEGREES REMARK 500 1 G B 6 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G B 6 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 G B 6 C4 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 G B 6 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G B 6 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G B 6 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 G B 6 C6 - C5 - N7 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 G B 6 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 1 C B 7 C3' - C2' - C1' ANGL. DEV. = 7.3 DEGREES REMARK 500 1 C B 7 N1 - C2 - O2 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 U B 8 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1201 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 13 -165.77 -68.95 REMARK 500 1 LEU A 16 -57.16 68.98 REMARK 500 1 ARG A 46 6.94 -64.68 REMARK 500 1 GLN A 48 77.61 -161.36 REMARK 500 2 PRO A 13 -164.53 -73.38 REMARK 500 2 LEU A 16 -56.91 69.02 REMARK 500 2 GLN A 48 85.54 -69.12 REMARK 500 2 ALA A 108 21.61 -79.92 REMARK 500 3 LEU A 16 -50.79 66.73 REMARK 500 3 ALA A 108 33.32 -79.93 REMARK 500 4 PRO A 13 -168.02 -75.29 REMARK 500 4 LEU A 16 -59.91 57.83 REMARK 500 4 PRO A 105 8.98 -65.67 REMARK 500 5 LEU A 16 -48.10 58.84 REMARK 500 5 VAL A 95 -168.15 -77.14 REMARK 500 5 ALA A 108 31.15 -94.26 REMARK 500 6 PRO A 13 -163.03 -78.28 REMARK 500 6 LEU A 16 -50.55 63.97 REMARK 500 6 GLN A 48 105.22 -160.71 REMARK 500 7 LEU A 16 -52.69 63.04 REMARK 500 7 ARG A 46 36.87 -80.12 REMARK 500 7 MET A 123 36.37 -78.43 REMARK 500 8 PRO A 13 -165.26 -76.34 REMARK 500 8 LEU A 16 -48.52 68.44 REMARK 500 8 LEU A 51 144.12 -171.70 REMARK 500 8 ASP A 57 40.68 -100.53 REMARK 500 9 PRO A 13 -152.71 -85.12 REMARK 500 9 LEU A 16 -44.50 60.55 REMARK 500 9 PRO A 105 -7.95 -58.37 REMARK 500 9 MET A 123 35.66 -83.32 REMARK 500 10 LEU A 16 -67.85 61.90 REMARK 500 10 ASP A 29 -39.83 -130.94 REMARK 500 10 ASP A 57 17.74 -146.12 REMARK 500 10 ILE A 63 2.68 -60.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 123 LYS A 124 3 148.37 REMARK 500 ARG A 46 GLY A 47 4 145.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 7 0.08 SIDE CHAIN REMARK 500 1 ARG A 28 0.07 SIDE CHAIN REMARK 500 1 C B 2 0.11 SIDE CHAIN REMARK 500 1 U B 3 0.13 SIDE CHAIN REMARK 500 1 G B 4 0.19 SIDE CHAIN REMARK 500 1 C B 7 0.08 SIDE CHAIN REMARK 500 1 U B 8 0.10 SIDE CHAIN REMARK 500 1 C B 9 0.07 SIDE CHAIN REMARK 500 1 A B 11 0.11 SIDE CHAIN REMARK 500 1 G B 14 0.09 SIDE CHAIN REMARK 500 1 G B 16 0.08 SIDE CHAIN REMARK 500 1 A B 18 0.08 SIDE CHAIN REMARK 500 1 U B 20 0.16 SIDE CHAIN REMARK 500 1 A B 22 0.08 SIDE CHAIN REMARK 500 1 U B 23 0.07 SIDE CHAIN REMARK 500 1 G B 24 0.15 SIDE CHAIN REMARK 500 2 U B 3 0.07 SIDE CHAIN REMARK 500 2 G B 4 0.15 SIDE CHAIN REMARK 500 2 A B 5 0.06 SIDE CHAIN REMARK 500 2 C B 7 0.09 SIDE CHAIN REMARK 500 2 U B 8 0.11 SIDE CHAIN REMARK 500 2 C B 9 0.10 SIDE CHAIN REMARK 500 2 A B 12 0.13 SIDE CHAIN REMARK 500 2 A B 13 0.08 SIDE CHAIN REMARK 500 2 A B 15 0.10 SIDE CHAIN REMARK 500 2 G B 16 0.07 SIDE CHAIN REMARK 500 2 A B 18 0.10 SIDE CHAIN REMARK 500 2 G B 21 0.08 SIDE CHAIN REMARK 500 3 PHE A 10 0.08 SIDE CHAIN REMARK 500 3 U B 3 0.09 SIDE CHAIN REMARK 500 3 G B 4 0.14 SIDE CHAIN REMARK 500 3 A B 5 0.08 SIDE CHAIN REMARK 500 3 G B 6 0.07 SIDE CHAIN REMARK 500 3 A B 13 0.16 SIDE CHAIN REMARK 500 3 G B 14 0.13 SIDE CHAIN REMARK 500 3 G B 16 0.09 SIDE CHAIN REMARK 500 3 U B 20 0.07 SIDE CHAIN REMARK 500 3 G B 24 0.10 SIDE CHAIN REMARK 500 4 ARG A 109 0.09 SIDE CHAIN REMARK 500 4 U B 3 0.07 SIDE CHAIN REMARK 500 4 G B 4 0.14 SIDE CHAIN REMARK 500 4 A B 5 0.07 SIDE CHAIN REMARK 500 4 G B 6 0.08 SIDE CHAIN REMARK 500 4 U B 8 0.08 SIDE CHAIN REMARK 500 4 C B 9 0.07 SIDE CHAIN REMARK 500 4 G B 10 0.07 SIDE CHAIN REMARK 500 4 G B 14 0.09 SIDE CHAIN REMARK 500 4 C B 17 0.06 SIDE CHAIN REMARK 500 4 A B 19 0.07 SIDE CHAIN REMARK 500 4 U B 20 0.08 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 149 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ALA A 17 -11.04 REMARK 500 3 VAL A 8 10.03 REMARK 500 5 THR A 37 -10.69 REMARK 500 9 ALA A 17 -10.14 REMARK 500 9 LEU A 87 -11.79 REMARK 500 10 GLU A 18 -10.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34465 RELATED DB: BMRB REMARK 900 STRUCTURE OF A PROTEIN-RNA COMPLEX BY SSNMR DBREF 6TPH A 2 124 UNP Q8U160 RL7A_PYRFU 1 123 DBREF 6TPH B 1 26 PDB 6TPH 6TPH 1 26 SEQRES 1 A 123 MET ALA LYS PRO SER TYR VAL LYS PHE GLU VAL PRO LYS SEQRES 2 A 123 GLU LEU ALA GLU LYS ALA LEU GLN ALA VAL GLU ILE ALA SEQRES 3 A 123 ARG ASP THR GLY LYS ILE ARG LYS GLY THR ASN GLU THR SEQRES 4 A 123 THR LYS ALA VAL GLU ARG GLY GLN ALA LYS LEU VAL ILE SEQRES 5 A 123 ILE ALA GLU ASP VAL ASP PRO GLU GLU ILE VAL ALA HIS SEQRES 6 A 123 LEU PRO PRO LEU CYS GLU GLU LYS GLU ILE PRO TYR ILE SEQRES 7 A 123 TYR VAL PRO SER LYS LYS GLU LEU GLY ALA ALA ALA GLY SEQRES 8 A 123 ILE GLU VAL ALA ALA ALA SER VAL ALA ILE ILE GLU PRO SEQRES 9 A 123 GLY LYS ALA ARG ASP LEU VAL GLU GLU ILE ALA MET LYS SEQRES 10 A 123 VAL LYS GLU LEU MET LYS SEQRES 1 B 26 G C U G A G C U C G A A A SEQRES 2 B 26 G A G C A A U G A U G U C HELIX 1 AA1 LEU A 16 GLY A 31 1 16 HELIX 2 AA2 GLY A 36 ARG A 46 1 11 HELIX 3 AA3 PRO A 60 VAL A 64 5 5 HELIX 4 AA4 HIS A 66 LYS A 74 1 9 HELIX 5 AA5 SER A 83 GLY A 92 1 10 HELIX 6 AA6 PRO A 105 LYS A 107 5 3 HELIX 7 AA7 ALA A 108 MET A 123 1 16 SHEET 1 AA1 4 LYS A 32 LYS A 35 0 SHEET 2 AA1 4 SER A 99 GLU A 104 -1 O ILE A 103 N LYS A 32 SHEET 3 AA1 4 LEU A 51 ALA A 55 -1 N ILE A 53 O VAL A 100 SHEET 4 AA1 4 TYR A 78 VAL A 81 1 O VAL A 81 N ILE A 54 CISPEP 1 ASP A 59 PRO A 60 1 14.34 CISPEP 2 ASP A 59 PRO A 60 2 0.76 CISPEP 3 ASP A 59 PRO A 60 3 -18.06 CISPEP 4 ASP A 59 PRO A 60 4 -10.95 CISPEP 5 ASP A 59 PRO A 60 5 -3.31 CISPEP 6 ASP A 59 PRO A 60 6 -3.16 CISPEP 7 ASP A 59 PRO A 60 7 -0.06 CISPEP 8 ASP A 59 PRO A 60 8 -6.39 CISPEP 9 ASP A 59 PRO A 60 9 1.80 CISPEP 10 ASP A 59 PRO A 60 10 3.39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1