HEADER HYDROLASE 17-DEC-19 6TR3 TITLE RUMINOCOCCUS GNAVUS GH29 FUCOSIDASE E1_10125 IN COMPLEX WITH FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F5/8 TYPE C DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [RUMINOCOCCUS] GNAVUS E1; SOURCE 3 ORGANISM_TAXID: 935582 KEYWDS FUCOSIDASE, FUCOSE, RUMINOCOCCUS GNAVUS, GH29, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.OWEN,H.WU,E.CROST,A.COLVILE,N.JUGE,M.A.WALSH REVDAT 3 24-JAN-24 6TR3 1 REMARK REVDAT 2 17-FEB-21 6TR3 1 JRNL REVDAT 1 28-OCT-20 6TR3 0 JRNL AUTH H.WU,O.REBELLO,E.H.CROST,C.D.OWEN,S.WALPOLE, JRNL AUTH 2 C.BENNATI-GRANIER,D.NDEH,S.MONACO,T.HICKS,A.COLVILE, JRNL AUTH 3 P.A.URBANOWICZ,M.A.WALSH,J.ANGULO,D.I.R.SPENCER,N.JUGE JRNL TITL FUCOSIDASES FROM THE HUMAN GUT SYMBIONT RUMINOCOCCUS GNAVUS. JRNL REF CELL.MOL.LIFE SCI. V. 78 675 2021 JRNL REFN ESSN 1420-9071 JRNL PMID 32333083 JRNL DOI 10.1007/S00018-020-03514-X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 52597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3844 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4105 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3609 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5625 ; 1.215 ; 1.871 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8460 ; 1.062 ; 2.932 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 5.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;37.989 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;12.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.634 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4660 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 802 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6710 4.6740 18.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0636 REMARK 3 T33: 0.0632 T12: -0.0041 REMARK 3 T13: -0.0186 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.3294 L22: 0.4923 REMARK 3 L33: 0.5527 L12: 0.1147 REMARK 3 L13: 0.0396 L23: 0.1842 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.0879 S13: 0.0917 REMARK 3 S21: 0.0901 S22: -0.0408 S23: 0.0535 REMARK 3 S31: 0.0449 S32: -0.0734 S33: 0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6TR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OUE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 25% PEG REMARK 280 3350, 0.1 M BIS-TRIS PH 5.5 20MG/ML PROTEIN, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.10950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.32150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.10950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.32150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 MET A 19 REMARK 465 GLU A 20 REMARK 465 THR A 21 REMARK 465 THR A 22 REMARK 465 PRO A 528 REMARK 465 ASN A 529 REMARK 465 PRO A 530 REMARK 465 ILE A 531 REMARK 465 PRO A 532 REMARK 465 LYS A 533 REMARK 465 GLY A 534 REMARK 465 MET A 535 REMARK 465 GLU A 536 REMARK 465 VAL A 537 REMARK 465 ILE A 538 REMARK 465 ASP A 539 REMARK 465 VAL A 540 REMARK 465 GLU A 541 REMARK 465 ASP A 542 REMARK 465 LYS A 543 REMARK 465 ASP A 544 REMARK 465 VAL A 545 REMARK 465 ALA A 546 REMARK 465 ASP A 547 REMARK 465 GLY A 548 REMARK 465 LYS A 549 REMARK 465 GLY A 550 REMARK 465 PHE A 551 REMARK 465 THR A 552 REMARK 465 PHE A 553 REMARK 465 LYS A 554 REMARK 465 GLY A 555 REMARK 465 LYS A 556 REMARK 465 TRP A 557 REMARK 465 ASN A 558 REMARK 465 PRO A 559 REMARK 465 GLU A 560 REMARK 465 ASN A 561 REMARK 465 GLN A 562 REMARK 465 PRO A 563 REMARK 465 GLN A 564 REMARK 465 TYR A 565 REMARK 465 ILE A 566 REMARK 465 ASN A 567 REMARK 465 GLY A 568 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 55 -43.06 72.43 REMARK 500 ASP A 143 98.88 -163.97 REMARK 500 GLN A 231 116.00 -161.36 REMARK 500 GLU A 262 -126.50 51.92 REMARK 500 SER A 283 35.51 -84.41 REMARK 500 ASN A 297 71.33 61.14 REMARK 500 LYS A 331 55.42 -148.14 REMARK 500 SER A 347 -75.88 -116.42 REMARK 500 THR A 365 -159.05 -123.13 REMARK 500 GLU A 401 139.83 -171.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD1 REMARK 620 2 PHE A 91 O 91.7 REMARK 620 3 GLU A 147 OE1 92.3 92.3 REMARK 620 4 HOH A 857 O 87.0 85.4 177.6 REMARK 620 5 HOH A 860 O 85.9 177.5 87.4 94.9 REMARK 620 6 HOH A 866 O 177.9 86.3 88.4 92.3 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 123 O REMARK 620 2 THR A 126 O 87.3 REMARK 620 3 ASP A 129 OD2 91.5 90.4 REMARK 620 4 HOH A 762 O 176.6 95.8 87.1 REMARK 620 5 HOH A 765 O 91.2 176.5 92.8 85.8 REMARK 620 6 HOH A 883 O 90.2 87.0 176.8 91.4 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 172 O REMARK 620 2 GLY A 174 O 87.3 REMARK 620 3 ASP A 188 OD1 159.2 86.6 REMARK 620 4 ASP A 188 OD2 150.4 103.6 50.3 REMARK 620 5 LYS A 190 O 91.9 171.2 91.1 81.3 REMARK 620 6 HOH A 768 O 81.7 93.0 118.5 70.5 95.6 REMARK 620 7 HOH A 822 O 78.2 70.1 81.0 131.4 101.1 154.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 204 O REMARK 620 2 GLY A 213 O 175.1 REMARK 620 3 GLU A 246 OE2 87.3 94.1 REMARK 620 4 HOH A 827 O 89.7 95.0 86.5 REMARK 620 5 HOH A 849 O 89.6 85.7 94.5 178.7 REMARK 620 6 HOH A 865 O 90.7 88.0 177.3 91.6 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 413 O REMARK 620 2 ASP A 416 OD1 79.9 REMARK 620 3 ASN A 418 O 174.9 96.1 REMARK 620 4 THR A 421 O 94.1 143.7 87.3 REMARK 620 5 THR A 421 OG1 91.5 74.0 84.3 70.4 REMARK 620 6 SER A 514 O 77.6 129.1 107.5 83.2 150.6 REMARK 620 7 GLU A 515 OE2 103.5 72.2 78.0 143.1 139.7 69.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 752 O REMARK 620 2 HOH A 757 O 88.1 REMARK 620 3 HOH A 813 O 91.3 90.0 REMARK 620 4 HOH A 947 O 178.8 90.9 88.1 REMARK 620 5 HOH A 949 O 93.6 177.2 92.2 87.4 REMARK 620 6 HOH A 960 O 89.4 89.1 178.9 91.3 88.7 REMARK 620 N 1 2 3 4 5 DBREF1 6TR3 A 17 568 UNP A0A2N5PIE7_RUMGN DBREF2 6TR3 A A0A2N5PIE7 39 590 SEQADV 6TR3 GLY A 17 UNP A0A2N5PIE ARG 39 CONFLICT SEQADV 6TR3 PRO A 18 UNP A0A2N5PIE ALA 40 CONFLICT SEQADV 6TR3 MET A 19 UNP A0A2N5PIE ALA 41 CONFLICT SEQADV 6TR3 ASN A 137 UNP A0A2N5PIE ASP 159 CONFLICT SEQADV 6TR3 GLU A 393 UNP A0A2N5PIE ALA 415 CONFLICT SEQADV 6TR3 ILE A 516 UNP A0A2N5PIE VAL 538 CONFLICT SEQRES 1 A 552 GLY PRO MET GLU THR THR ASN TRP ILE GLY ASP GLU ASN SEQRES 2 A 552 LEU THR GLY ASN ALA GLU ALA PRO ALA LYS ASP ASP VAL SEQRES 3 A 552 VAL PRO ASP LYS ASN GLN PHE ARG TYR GLN LYS GLU GLU SEQRES 4 A 552 LEU ALA ALA PHE CYS HIS PHE GLY PRO ASN THR PHE ASN SEQRES 5 A 552 GLU ILE GLU TRP GLY GLU HIS TYR GLY ASN GLN LYS PRO SEQRES 6 A 552 SER GLU ILE PHE THR LEU LYS ASN ASP PHE ASP ALA GLU SEQRES 7 A 552 THR LEU VAL LYS THR LEU LYS ASP ALA GLY PHE LYS LYS SEQRES 8 A 552 LEU ILE VAL THR ALA LYS HIS HIS ASP GLY PHE CYS ILE SEQRES 9 A 552 TRP ASP SER GLU HIS THR GLU TYR ASP VAL LYS ALA SER SEQRES 10 A 552 GLY TYR LYS ASN LYS ASN GLY GLU SER ASP ILE LEU ALA SEQRES 11 A 552 GLU ILE SER LYS ALA CYS THR ASP GLN ASN MET ASP MET SEQRES 12 A 552 GLY LEU TYR LEU SER PRO TRP ASP ILE HIS GLU PRO SER SEQRES 13 A 552 TYR GLY TYR LYS ASP GLU HIS GLY ASN PRO THR THR PRO SEQRES 14 A 552 ASP LYS ASP ALA LYS ASP TYR ASN GLU PHE TYR ASN ASN SEQRES 15 A 552 GLN LEU GLU GLU ILE LEU GLY ASN PRO LYS TYR GLY ASN SEQRES 16 A 552 ASP GLY HIS PHE VAL GLU VAL TRP MET ASP GLY ALA LYS SEQRES 17 A 552 GLY SER GLY ALA ASN ALA GLN GLU TYR ASP PHE LYS LYS SEQRES 18 A 552 TRP PHE LYS THR ILE GLN ASP ASN GLU GLY LYS ALA ALA SEQRES 19 A 552 GLY TYR ASP ALA ASP CYS MET LEU PHE GLY ALA GLU ALA SEQRES 20 A 552 TYR THR THR VAL ARG TRP ILE GLY ASN GLU LEU GLY ILE SEQRES 21 A 552 ALA GLY LYS ASP THR TRP SER LYS SER LYS VAL ASP LYS SEQRES 22 A 552 ASP LYS ASN THR ILE ASN SER ASN LYS GLN GLY ASN ALA SEQRES 23 A 552 THR VAL GLY PHE GLU ASP GLY ASP GLN TRP THR VAL PRO SEQRES 24 A 552 GLU ALA ASP ALA ARG ILE THR SER GLY TRP PHE TRP GLY SEQRES 25 A 552 THR LYS LYS ASN THR PRO LYS THR MET GLU GLU LEU SER SEQRES 26 A 552 ASP MET TYR PHE ASN SER VAL GLY HIS ASN ALA THR LEU SEQRES 27 A 552 LEU LEU ASN VAL PRO PRO ASN ASN GLN GLY THR VAL ASP SEQRES 28 A 552 LYS ALA ILE LEU ASP ARG VAL THR GLU PHE GLY ASN ASN SEQRES 29 A 552 ILE LYS ALA THR PHE LYS THR ASN LEU ALA LYS ALA GLU SEQRES 30 A 552 GLY ALA SER VAL LYS VAL SER GLU VAL ARG GLY GLY ALA SEQRES 31 A 552 LYS GLU TYR LYS PRO GLY ASN MET ILE ASP ASP ASN ASP SEQRES 32 A 552 GLU THR TYR TRP ALA THR SER ASP GLY LYS LYS SER GLY SEQRES 33 A 552 GLU ILE LEU ILE ASP LEU GLY LYS GLU THR LYS PHE ASP SEQRES 34 A 552 VAL VAL SER ILE GLU GLU ALA ILE GLN ASN GLY GLN ARG SEQRES 35 A 552 ILE ASN ASN TYR LYS VAL GLU TYR ARG ASN GLY ASP SER SEQRES 36 A 552 GLY THR TRP THR LEU LEU GLU GLU GLY LYS THR ILE GLY SEQRES 37 A 552 ALA LYS ARG LEU CYS ARG THR SER GLU THR THR ALA ARG SEQRES 38 A 552 GLN ILE LYS ILE THR VAL GLY THR CYS ASP GLY LYS VAL SEQRES 39 A 552 PRO MET ILE SER GLU ILE GLY VAL TYR LYS SER THR GLU SEQRES 40 A 552 ASP MET GLU LYS PRO ASN PRO ILE PRO LYS GLY MET GLU SEQRES 41 A 552 VAL ILE ASP VAL GLU ASP LYS ASP VAL ALA ASP GLY LYS SEQRES 42 A 552 GLY PHE THR PHE LYS GLY LYS TRP ASN PRO GLU ASN GLN SEQRES 43 A 552 PRO GLN TYR ILE ASN GLY HET FUL A 601 11 HET MG A 602 1 HET MG A 603 1 HET MG A 604 1 HET MG A 605 1 HET CA A 606 1 HET CA A 607 1 HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 FUL C6 H12 O5 FORMUL 3 MG 4(MG 2+) FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *270(H2 O) HELIX 1 AA1 ASP A 45 GLU A 55 1 11 HELIX 2 AA2 GLY A 63 ASN A 68 5 6 HELIX 3 AA3 LYS A 80 PHE A 85 1 6 HELIX 4 AA4 ASP A 92 ALA A 103 1 12 HELIX 5 AA5 ASP A 129 GLY A 134 1 6 HELIX 6 AA6 ASP A 143 GLN A 155 1 13 HELIX 7 AA7 THR A 184 ASP A 188 5 5 HELIX 8 AA8 ASP A 191 GLY A 205 1 15 HELIX 9 AA9 GLY A 210 HIS A 214 5 5 HELIX 10 AB1 ASP A 234 GLY A 247 1 14 HELIX 11 AB2 LYS A 248 GLY A 251 5 4 HELIX 12 AB3 ALA A 261 THR A 265 5 5 HELIX 13 AB4 THR A 336 SER A 347 1 12 HELIX 14 AB5 VAL A 348 ASN A 351 5 4 HELIX 15 AB6 ASP A 367 PHE A 385 1 19 HELIX 16 AB7 ASN A 388 ALA A 392 5 5 HELIX 17 AB8 VAL A 402 ILE A 415 5 14 HELIX 18 AB9 ILE A 453 GLY A 456 5 4 HELIX 19 AC1 THR A 522 GLU A 526 5 5 SHEET 1 AA1 8 MET A 257 PHE A 259 0 SHEET 2 AA1 8 GLU A 217 TRP A 219 1 N VAL A 218 O PHE A 259 SHEET 3 AA1 8 ASP A 158 LEU A 163 1 N LEU A 161 O TRP A 219 SHEET 4 AA1 8 LYS A 107 LYS A 113 1 N VAL A 110 O TYR A 162 SHEET 5 AA1 8 LEU A 56 CYS A 60 1 N ALA A 58 O LYS A 107 SHEET 6 AA1 8 THR A 353 ASN A 357 1 O LEU A 354 N ALA A 57 SHEET 7 AA1 8 VAL A 314 ARG A 320 1 N ALA A 319 O ASN A 357 SHEET 8 AA1 8 VAL A 267 TRP A 269 1 N ARG A 268 O GLU A 316 SHEET 1 AA2 3 THR A 293 ASN A 295 0 SHEET 2 AA2 3 LYS A 284 ASP A 288 -1 N LYS A 286 O ASN A 295 SHEET 3 AA2 3 GLN A 311 TRP A 312 -1 O GLN A 311 N SER A 285 SHEET 1 AA3 2 LYS A 298 GLN A 299 0 SHEET 2 AA3 2 ALA A 302 THR A 303 -1 O ALA A 302 N GLN A 299 SHEET 1 AA4 4 SER A 396 VAL A 399 0 SHEET 2 AA4 4 SER A 431 GLU A 451 -1 O LEU A 435 N LYS A 398 SHEET 3 AA4 4 MET A 512 TYR A 519 -1 O GLY A 517 N SER A 448 SHEET 4 AA4 4 TRP A 423 ALA A 424 -1 N TRP A 423 O ILE A 513 SHEET 1 AA5 5 SER A 396 VAL A 399 0 SHEET 2 AA5 5 SER A 431 GLU A 451 -1 O LEU A 435 N LYS A 398 SHEET 3 AA5 5 ARG A 487 GLY A 504 -1 O ARG A 497 N LEU A 438 SHEET 4 AA5 5 ASN A 461 ARG A 467 -1 N LYS A 463 O THR A 502 SHEET 5 AA5 5 THR A 475 GLY A 480 -1 O THR A 475 N TYR A 466 LINK OD1 ASP A 90 MG MG A 605 1555 1555 2.07 LINK O PHE A 91 MG MG A 605 1555 1555 2.05 LINK O SER A 123 MG MG A 603 1555 1555 2.06 LINK O THR A 126 MG MG A 603 1555 1555 2.09 LINK OD2 ASP A 129 MG MG A 603 1555 1555 2.15 LINK OE1 GLU A 147 MG MG A 605 1555 1555 2.11 LINK O SER A 172 CA CA A 607 1555 1555 2.27 LINK O GLY A 174 CA CA A 607 1555 1555 2.26 LINK OD1 ASP A 188 CA CA A 607 1555 1555 2.53 LINK OD2 ASP A 188 CA CA A 607 1555 1555 2.62 LINK O LYS A 190 CA CA A 607 1555 1555 2.34 LINK O LEU A 204 MG MG A 604 1555 1555 2.09 LINK O GLY A 213 MG MG A 604 1555 1555 2.02 LINK OE2 GLU A 246 MG MG A 604 1555 1555 2.08 LINK O ASN A 413 CA CA A 606 1555 1555 2.20 LINK OD1 ASP A 416 CA CA A 606 1555 1555 2.40 LINK O ASN A 418 CA CA A 606 1555 1555 2.35 LINK O THR A 421 CA CA A 606 1555 1555 2.48 LINK OG1 THR A 421 CA CA A 606 1555 1555 2.36 LINK O SER A 514 CA CA A 606 1555 1555 2.44 LINK OE2 GLU A 515 CA CA A 606 1555 1555 2.44 LINK MG MG A 602 O HOH A 752 1555 1555 2.01 LINK MG MG A 602 O HOH A 757 1555 1555 2.05 LINK MG MG A 602 O HOH A 813 1555 1555 2.01 LINK MG MG A 602 O HOH A 947 1555 1555 2.01 LINK MG MG A 602 O HOH A 949 1555 1555 2.01 LINK MG MG A 602 O HOH A 960 1555 1555 2.04 LINK MG MG A 603 O HOH A 762 1555 1555 2.12 LINK MG MG A 603 O HOH A 765 1555 1555 2.09 LINK MG MG A 603 O HOH A 883 1555 1555 2.10 LINK MG MG A 604 O HOH A 827 1555 1555 2.04 LINK MG MG A 604 O HOH A 849 1555 1555 2.10 LINK MG MG A 604 O HOH A 865 1555 1555 2.06 LINK MG MG A 605 O HOH A 857 1555 1555 2.10 LINK MG MG A 605 O HOH A 860 1555 1555 2.08 LINK MG MG A 605 O HOH A 866 1555 1555 2.09 LINK CA CA A 607 O HOH A 768 1555 1555 2.35 LINK CA CA A 607 O HOH A 822 1555 1555 2.51 CRYST1 144.219 48.643 80.287 90.00 115.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006934 0.000000 0.003236 0.00000 SCALE2 0.000000 0.020558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013745 0.00000