HEADER OXIDOREDUCTASE 08-JAN-20 6TUY TITLE HUMAN LSD1/COREST BOUND TO THE QUINAZOLINE INHIBITOR MC4106 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRAF35-HDAC COMPLEX PROTEIN BHC110,FLAVIN-CONTAINING AMINE COMPND 5 OXIDASE DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REST COREPRESSOR 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PROTEIN COREST; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM1A, AOF2, KDM1, KIAA0601, LSD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RCOR1, KIAA0071, RCOR; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS EPIGENETICS, HISTONE DEMETHYLASE, EPIGENETIC INHIBITOR, DUAL KEYWDS 2 INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MATTEVI,B.MARROCCO REVDAT 3 24-JAN-24 6TUY 1 REMARK REVDAT 2 03-AUG-22 6TUY 1 JRNL REVDAT 1 21-JUL-21 6TUY 0 JRNL AUTH M.MENNA,F.FIORENTINO,B.MARROCCO,A.LUCIDI,S.TOMASSI,D.CILLI, JRNL AUTH 2 M.ROMANENGHI,M.CASSANDRI,S.POMELLA,M.PEZZELLA,D.DEL BUFALO, JRNL AUTH 3 M.S.ZEYA ANSARI,N.TOMASEVIC,M.MLADENOVIC,M.VIVIANO, JRNL AUTH 4 G.SBARDELLA,R.ROTA,D.TRISCIUOGLIO,S.MINUCCI,A.MATTEVI, JRNL AUTH 5 D.ROTILI,A.MAI JRNL TITL NOVEL NON-COVALENT LSD1 INHIBITORS ENDOWED WITH ANTICANCER JRNL TITL 2 EFFECTS IN LEUKEMIA AND SOLID TUMOR CELLULAR MODELS. JRNL REF EUR.J.MED.CHEM. V. 237 14410 2022 JRNL REFN ISSN 0223-5234 JRNL PMID 35525212 JRNL DOI 10.1016/J.EJMECH.2022.114410 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 75601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3960 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.66000 REMARK 3 B22 (A**2) : -3.52000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6639 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6231 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9002 ; 2.410 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14465 ; 1.336 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 798 ; 8.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;36.988 ;24.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1131 ;18.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 991 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7239 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1311 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 150.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 3.06500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2V1D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 DEGREES C IN 100 MM N-(2- REMARK 280 ACETAMIDO)IMINODIACETIC ACID (PH 6.5) AND 1.2 M NA-K TARTRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.78900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.43100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 116.74750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.78900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.43100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 116.74750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.78900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.43100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 116.74750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.78900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.43100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.74750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 GLU A 36 REMARK 465 VAL A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 GLN A 40 REMARK 465 PRO A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 LEU A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 PRO A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 VAL A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 ALA A 54 REMARK 465 VAL A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 ARG A 58 REMARK 465 THR A 59 REMARK 465 PRO A 60 REMARK 465 ARG A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 GLU A 64 REMARK 465 PRO A 65 REMARK 465 PRO A 66 REMARK 465 ARG A 67 REMARK 465 ALA A 68 REMARK 465 SER A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 LEU A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 PRO A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 SER A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLN A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 PRO A 87 REMARK 465 THR A 88 REMARK 465 VAL A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 ALA A 94 REMARK 465 THR A 95 REMARK 465 PRO A 96 REMARK 465 MET A 97 REMARK 465 GLU A 98 REMARK 465 THR A 99 REMARK 465 GLY A 100 REMARK 465 ILE A 101 REMARK 465 ALA A 102 REMARK 465 GLU A 103 REMARK 465 THR A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 465 GLY A 107 REMARK 465 ARG A 108 REMARK 465 ARG A 109 REMARK 465 THR A 110 REMARK 465 SER A 111 REMARK 465 ARG A 112 REMARK 465 ARG A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 LYS A 117 REMARK 465 VAL A 118 REMARK 465 GLU A 119 REMARK 465 TYR A 120 REMARK 465 ARG A 121 REMARK 465 GLU A 122 REMARK 465 MET A 123 REMARK 465 ASP A 124 REMARK 465 GLU A 125 REMARK 465 SER A 126 REMARK 465 LEU A 127 REMARK 465 ALA A 128 REMARK 465 ASN A 129 REMARK 465 LEU A 130 REMARK 465 SER A 131 REMARK 465 GLU A 132 REMARK 465 ASP A 133 REMARK 465 GLU A 134 REMARK 465 TYR A 135 REMARK 465 TYR A 136 REMARK 465 SER A 137 REMARK 465 GLU A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 ARG A 141 REMARK 465 ASN A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 GLU A 146 REMARK 465 LYS A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 LYS A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 PRO A 153 REMARK 465 PRO A 154 REMARK 465 PRO A 155 REMARK 465 PRO A 156 REMARK 465 GLN A 157 REMARK 465 ALA A 158 REMARK 465 PRO A 159 REMARK 465 PRO A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 GLU A 163 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 PRO A 168 REMARK 465 GLU A 169 REMARK 465 GLU A 170 REMARK 465 ARG A 854 REMARK 465 GLN A 855 REMARK 465 ALA A 856 REMARK 465 THR A 857 REMARK 465 PRO A 858 REMARK 465 GLY A 859 REMARK 465 VAL A 860 REMARK 465 PRO A 861 REMARK 465 ALA A 862 REMARK 465 GLN A 863 REMARK 465 GLN A 864 REMARK 465 SER A 865 REMARK 465 PRO A 866 REMARK 465 SER A 867 REMARK 465 MET A 868 REMARK 465 PRO A 869 REMARK 465 MET B -2 REMARK 465 PRO B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 VAL B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 ASN B 16 REMARK 465 ASN B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 ALA B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 SER B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 CYS B 35 REMARK 465 ALA B 36 REMARK 465 SER B 37 REMARK 465 PRO B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 THR B 41 REMARK 465 ALA B 42 REMARK 465 ALA B 43 REMARK 465 SER B 44 REMARK 465 GLY B 45 REMARK 465 ALA B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 48 REMARK 465 SER B 49 REMARK 465 SER B 50 REMARK 465 ALA B 51 REMARK 465 SER B 52 REMARK 465 ALA B 53 REMARK 465 ALA B 54 REMARK 465 ALA B 55 REMARK 465 ALA B 56 REMARK 465 SER B 57 REMARK 465 ALA B 58 REMARK 465 ALA B 59 REMARK 465 ALA B 60 REMARK 465 ALA B 61 REMARK 465 PRO B 62 REMARK 465 ASN B 63 REMARK 465 ASN B 64 REMARK 465 GLY B 65 REMARK 465 GLN B 66 REMARK 465 ASN B 67 REMARK 465 LYS B 68 REMARK 465 SER B 69 REMARK 465 LEU B 70 REMARK 465 ALA B 71 REMARK 465 ALA B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 PRO B 75 REMARK 465 ASN B 76 REMARK 465 GLY B 77 REMARK 465 ASN B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 SER B 81 REMARK 465 ASN B 82 REMARK 465 SER B 83 REMARK 465 TRP B 84 REMARK 465 GLU B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 87 REMARK 465 SER B 88 REMARK 465 SER B 89 REMARK 465 GLY B 90 REMARK 465 SER B 91 REMARK 465 SER B 92 REMARK 465 SER B 93 REMARK 465 ASP B 94 REMARK 465 GLU B 95 REMARK 465 GLU B 96 REMARK 465 HIS B 97 REMARK 465 GLY B 98 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 GLY B 101 REMARK 465 MET B 102 REMARK 465 ARG B 103 REMARK 465 VAL B 104 REMARK 465 GLY B 105 REMARK 465 PRO B 106 REMARK 465 GLN B 107 REMARK 465 TYR B 108 REMARK 465 GLN B 109 REMARK 465 ALA B 110 REMARK 465 VAL B 111 REMARK 465 VAL B 112 REMARK 465 PRO B 113 REMARK 465 ASP B 114 REMARK 465 PHE B 115 REMARK 465 ASP B 116 REMARK 465 PRO B 117 REMARK 465 ALA B 118 REMARK 465 LYS B 119 REMARK 465 LEU B 120 REMARK 465 ALA B 121 REMARK 465 ARG B 122 REMARK 465 ARG B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 GLU B 126 REMARK 465 ARG B 127 REMARK 465 ASP B 128 REMARK 465 ASN B 129 REMARK 465 LEU B 130 REMARK 465 GLY B 131 REMARK 465 MET B 132 REMARK 465 LEU B 133 REMARK 465 VAL B 134 REMARK 465 TRP B 135 REMARK 465 SER B 136 REMARK 465 PRO B 137 REMARK 465 ASN B 138 REMARK 465 GLN B 139 REMARK 465 ASN B 140 REMARK 465 LEU B 141 REMARK 465 SER B 142 REMARK 465 GLU B 143 REMARK 465 ALA B 144 REMARK 465 LYS B 145 REMARK 465 LEU B 146 REMARK 465 ASP B 147 REMARK 465 GLU B 148 REMARK 465 TYR B 149 REMARK 465 ILE B 150 REMARK 465 ALA B 151 REMARK 465 ILE B 152 REMARK 465 ALA B 153 REMARK 465 LYS B 154 REMARK 465 GLU B 155 REMARK 465 LYS B 156 REMARK 465 HIS B 157 REMARK 465 GLY B 158 REMARK 465 TYR B 159 REMARK 465 ASN B 160 REMARK 465 MET B 161 REMARK 465 GLU B 162 REMARK 465 GLN B 163 REMARK 465 ALA B 164 REMARK 465 LEU B 165 REMARK 465 GLY B 166 REMARK 465 MET B 167 REMARK 465 LEU B 168 REMARK 465 PHE B 169 REMARK 465 TRP B 170 REMARK 465 HIS B 171 REMARK 465 LYS B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 ILE B 175 REMARK 465 GLU B 176 REMARK 465 LYS B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 ALA B 180 REMARK 465 ASP B 181 REMARK 465 LEU B 182 REMARK 465 PRO B 183 REMARK 465 ASN B 184 REMARK 465 PHE B 185 REMARK 465 THR B 186 REMARK 465 PRO B 187 REMARK 465 PHE B 188 REMARK 465 PRO B 189 REMARK 465 ASP B 190 REMARK 465 GLU B 191 REMARK 465 TRP B 192 REMARK 465 THR B 193 REMARK 465 VAL B 194 REMARK 465 GLU B 195 REMARK 465 ASP B 196 REMARK 465 LYS B 197 REMARK 465 VAL B 198 REMARK 465 LEU B 199 REMARK 465 PHE B 200 REMARK 465 GLU B 201 REMARK 465 GLN B 202 REMARK 465 ALA B 203 REMARK 465 PHE B 204 REMARK 465 SER B 205 REMARK 465 PHE B 206 REMARK 465 HIS B 207 REMARK 465 GLY B 208 REMARK 465 LYS B 209 REMARK 465 THR B 210 REMARK 465 PHE B 211 REMARK 465 HIS B 212 REMARK 465 ARG B 213 REMARK 465 ILE B 214 REMARK 465 GLN B 215 REMARK 465 GLN B 216 REMARK 465 MET B 217 REMARK 465 LEU B 218 REMARK 465 PRO B 219 REMARK 465 ASP B 220 REMARK 465 LYS B 221 REMARK 465 SER B 222 REMARK 465 ILE B 223 REMARK 465 ALA B 224 REMARK 465 SER B 225 REMARK 465 LEU B 226 REMARK 465 VAL B 227 REMARK 465 LYS B 228 REMARK 465 PHE B 229 REMARK 465 TYR B 230 REMARK 465 TYR B 231 REMARK 465 SER B 232 REMARK 465 TRP B 233 REMARK 465 LYS B 234 REMARK 465 LYS B 235 REMARK 465 THR B 236 REMARK 465 ARG B 237 REMARK 465 THR B 238 REMARK 465 LYS B 239 REMARK 465 THR B 240 REMARK 465 SER B 241 REMARK 465 VAL B 242 REMARK 465 MET B 243 REMARK 465 ASP B 244 REMARK 465 ARG B 245 REMARK 465 HIS B 246 REMARK 465 ALA B 247 REMARK 465 ARG B 248 REMARK 465 LYS B 249 REMARK 465 GLN B 250 REMARK 465 LYS B 251 REMARK 465 ARG B 252 REMARK 465 GLU B 253 REMARK 465 ARG B 254 REMARK 465 GLU B 255 REMARK 465 GLU B 256 REMARK 465 SER B 257 REMARK 465 GLU B 258 REMARK 465 ASP B 259 REMARK 465 GLU B 260 REMARK 465 LEU B 261 REMARK 465 GLU B 262 REMARK 465 GLU B 263 REMARK 465 ALA B 264 REMARK 465 ASN B 265 REMARK 465 GLY B 266 REMARK 465 ASN B 267 REMARK 465 ASN B 268 REMARK 465 PRO B 269 REMARK 465 ILE B 270 REMARK 465 ASP B 271 REMARK 465 ILE B 272 REMARK 465 GLU B 273 REMARK 465 VAL B 274 REMARK 465 ASP B 275 REMARK 465 GLN B 276 REMARK 465 ASN B 277 REMARK 465 LYS B 278 REMARK 465 GLU B 279 REMARK 465 SER B 280 REMARK 465 LYS B 281 REMARK 465 LYS B 282 REMARK 465 GLU B 283 REMARK 465 VAL B 284 REMARK 465 PRO B 285 REMARK 465 PRO B 286 REMARK 465 THR B 287 REMARK 465 GLU B 288 REMARK 465 THR B 289 REMARK 465 VAL B 290 REMARK 465 PRO B 291 REMARK 465 GLN B 292 REMARK 465 VAL B 293 REMARK 465 LYS B 294 REMARK 465 LYS B 295 REMARK 465 GLU B 296 REMARK 465 LYS B 297 REMARK 465 HIS B 298 REMARK 465 SER B 299 REMARK 465 THR B 300 REMARK 465 GLN B 301 REMARK 465 ALA B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 ARG B 305 REMARK 465 ALA B 306 REMARK 465 LYS B 307 REMARK 465 GLY B 442 REMARK 465 LYS B 443 REMARK 465 GLU B 444 REMARK 465 GLU B 445 REMARK 465 THR B 446 REMARK 465 ASN B 447 REMARK 465 GLY B 448 REMARK 465 PRO B 449 REMARK 465 SER B 450 REMARK 465 ASN B 451 REMARK 465 GLN B 452 REMARK 465 LYS B 453 REMARK 465 PRO B 454 REMARK 465 VAL B 455 REMARK 465 LYS B 456 REMARK 465 SER B 457 REMARK 465 PRO B 458 REMARK 465 ASP B 459 REMARK 465 ASN B 460 REMARK 465 SER B 461 REMARK 465 ILE B 462 REMARK 465 LYS B 463 REMARK 465 MET B 464 REMARK 465 PRO B 465 REMARK 465 GLU B 466 REMARK 465 GLU B 467 REMARK 465 GLU B 468 REMARK 465 ASP B 469 REMARK 465 GLU B 470 REMARK 465 ALA B 471 REMARK 465 PRO B 472 REMARK 465 VAL B 473 REMARK 465 LEU B 474 REMARK 465 ASP B 475 REMARK 465 VAL B 476 REMARK 465 ARG B 477 REMARK 465 TYR B 478 REMARK 465 ALA B 479 REMARK 465 SER B 480 REMARK 465 ALA B 481 REMARK 465 SER B 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 413 CD GLU A 413 OE2 0.105 REMARK 500 GLU A 559 CD GLU A 559 OE1 0.074 REMARK 500 SER A 598 CB SER A 598 OG 0.088 REMARK 500 GLU A 645 CG GLU A 645 CD 0.093 REMARK 500 GLU A 690 CD GLU A 690 OE1 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 303 CB - CG - OD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 303 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 PRO A 361 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 MET A 377 CG - SD - CE ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 425 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 485 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 557 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 688 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 PRO A 792 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 795 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 795 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 805 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 805 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 820 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 196 50.30 -144.39 REMARK 500 ALA A 233 -33.69 -37.03 REMARK 500 ASN A 263 58.25 39.27 REMARK 500 ILE A 270 -77.14 -94.05 REMARK 500 SER A 299 -38.05 -37.31 REMARK 500 MET A 332 -32.73 -133.88 REMARK 500 THR A 335 45.58 -84.36 REMARK 500 ALA A 369 126.12 -29.90 REMARK 500 ASN A 402 -139.94 61.36 REMARK 500 ASP A 425 -44.32 -29.73 REMARK 500 ILE A 428 -75.91 -47.79 REMARK 500 LYS A 507 -38.23 -30.11 REMARK 500 ASN A 514 65.13 -105.90 REMARK 500 ALA A 541 43.21 32.86 REMARK 500 HIS A 564 135.58 -39.50 REMARK 500 THR A 610 34.77 -80.99 REMARK 500 LEU A 659 130.13 -178.29 REMARK 500 PRO A 701 39.60 -77.30 REMARK 500 ALA A 757 -59.21 -148.55 REMARK 500 ILE A 793 144.71 -14.04 REMARK 500 TYR A 807 48.30 -144.86 REMARK 500 TYR A 834 0.12 -53.96 REMARK 500 ALA B 326 27.24 -60.67 REMARK 500 THR B 333 -70.57 -43.11 REMARK 500 GLU B 341 -37.50 -39.12 REMARK 500 PRO B 369 -7.92 -46.05 REMARK 500 VAL B 375 88.13 -65.35 REMARK 500 CYS B 379 170.03 -47.84 REMARK 500 ASP B 401 82.57 -55.47 REMARK 500 PHE B 428 31.95 -89.52 REMARK 500 ASN B 429 65.35 9.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 792 ILE A 793 126.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY8 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY8 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NY8 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 912 DBREF 6TUY A 1 868 UNP O60341 KDM1A_HUMAN 1 852 DBREF 6TUY B -2 482 UNP Q9UKL0 RCOR1_HUMAN 1 485 SEQADV 6TUY PRO A 869 UNP O60341 EXPRESSION TAG SEQRES 1 A 853 MET LEU SER GLY LYS LYS ALA ALA ALA ALA ALA ALA ALA SEQRES 2 A 853 ALA ALA ALA ALA ALA THR GLY THR GLU ALA GLY PRO GLY SEQRES 3 A 853 THR ALA GLY GLY SER GLU ASN GLY SER GLU VAL ALA ALA SEQRES 4 A 853 GLN PRO ALA GLY LEU SER GLY PRO ALA GLU VAL GLY PRO SEQRES 5 A 853 GLY ALA VAL GLY GLU ARG THR PRO ARG LYS LYS GLU PRO SEQRES 6 A 853 PRO ARG ALA SER PRO PRO GLY GLY LEU ALA GLU PRO PRO SEQRES 7 A 853 GLY SER ALA GLY PRO GLN ALA GLY PRO THR VAL VAL PRO SEQRES 8 A 853 GLY SER ALA THR PRO MET GLU THR GLY ILE ALA GLU THR SEQRES 9 A 853 PRO GLU GLY ARG ARG THR SER ARG ARG LYS ARG ALA LYS SEQRES 10 A 853 VAL GLU TYR ARG GLU MET ASP GLU SER LEU ALA ASN LEU SEQRES 11 A 853 SER GLU ASP GLU TYR TYR SER GLU GLU GLU ARG ASN ALA SEQRES 12 A 853 LYS ALA GLU LYS GLU LYS LYS LEU PRO PRO PRO PRO PRO SEQRES 13 A 853 GLN ALA PRO PRO GLU GLU GLU ASN GLU SER GLU PRO GLU SEQRES 14 A 853 GLU PRO SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG SEQRES 15 A 853 LEU PRO HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS SEQRES 16 A 853 PHE PRO ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS SEQRES 17 A 853 VAL PHE LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP SEQRES 18 A 853 LEU ASP ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR SEQRES 19 A 853 LEU GLN GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL SEQRES 20 A 853 LEU VAL HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY SEQRES 21 A 853 LEU ILE ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU SEQRES 22 A 853 PRO THR LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER SEQRES 23 A 853 GLY VAL SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER SEQRES 24 A 853 PHE GLY MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG SEQRES 25 A 853 VAL GLY GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR SEQRES 26 A 853 VAL ALA ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY SEQRES 27 A 853 GLY ASN PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET SEQRES 28 A 853 GLU LEU ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU SEQRES 29 A 853 ALA ASN GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET SEQRES 30 A 853 VAL GLU GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER SEQRES 31 A 853 TYR LEU SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN SEQRES 32 A 853 LYS PRO VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE SEQRES 33 A 853 GLN LEU GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU SEQRES 34 A 853 HIS TRP LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS SEQRES 35 A 853 GLU LEU LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE SEQRES 36 A 853 LYS GLU LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL SEQRES 37 A 853 LYS PRO PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SEQRES 38 A 853 SER LYS HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR SEQRES 39 A 853 ASP GLU LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS SEQRES 40 A 853 LEU GLN GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR SEQRES 41 A 853 LEU SER SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE SEQRES 42 A 853 ALA ASN LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR SEQRES 43 A 853 LEU SER LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU SEQRES 44 A 853 PHE THR GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER SEQRES 45 A 853 CYS VAL PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS SEQRES 46 A 853 LEU ASN THR ALA VAL ARG GLN VAL ARG TYR THR ALA SER SEQRES 47 A 853 GLY CYS GLU VAL ILE ALA VAL ASN THR ARG SER THR SER SEQRES 48 A 853 GLN THR PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR SEQRES 49 A 853 LEU PRO LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL SEQRES 50 A 853 GLN PHE VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA SEQRES 51 A 853 VAL GLN ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL SEQRES 52 A 853 LEU CYS PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN SEQRES 53 A 853 LEU PHE GLY HIS VAL GLY SER THR THR ALA SER ARG GLY SEQRES 54 A 853 GLU LEU PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE SEQRES 55 A 853 LEU LEU ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET SEQRES 56 A 853 GLU ASN ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU SEQRES 57 A 853 ALA ILE LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO SEQRES 58 A 853 GLN PRO LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP SEQRES 59 A 853 PRO TRP ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SEQRES 60 A 853 SER SER GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE SEQRES 61 A 853 THR PRO GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE SEQRES 62 A 853 PRO ARG LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN SEQRES 63 A 853 TYR PRO ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU SEQRES 64 A 853 ARG GLU ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA SEQRES 65 A 853 MET TYR THR LEU PRO ARG GLN ALA THR PRO GLY VAL PRO SEQRES 66 A 853 ALA GLN GLN SER PRO SER MET PRO SEQRES 1 B 485 MET PRO ALA MET VAL GLU LYS GLY PRO GLU VAL SER GLY SEQRES 2 B 485 LYS ARG ARG GLY ARG ASN ASN ALA ALA ALA SER ALA SER SEQRES 3 B 485 ALA ALA ALA ALA SER ALA ALA ALA SER ALA ALA CYS ALA SEQRES 4 B 485 SER PRO ALA ALA THR ALA ALA SER GLY ALA ALA ALA SER SEQRES 5 B 485 SER ALA SER ALA ALA ALA ALA SER ALA ALA ALA ALA PRO SEQRES 6 B 485 ASN ASN GLY GLN ASN LYS SER LEU ALA ALA ALA ALA PRO SEQRES 7 B 485 ASN GLY ASN SER SER SER ASN SER TRP GLU GLU GLY SER SEQRES 8 B 485 SER GLY SER SER SER ASP GLU GLU HIS GLY GLY GLY GLY SEQRES 9 B 485 MET ARG VAL GLY PRO GLN TYR GLN ALA VAL VAL PRO ASP SEQRES 10 B 485 PHE ASP PRO ALA LYS LEU ALA ARG ARG SER GLN GLU ARG SEQRES 11 B 485 ASP ASN LEU GLY MET LEU VAL TRP SER PRO ASN GLN ASN SEQRES 12 B 485 LEU SER GLU ALA LYS LEU ASP GLU TYR ILE ALA ILE ALA SEQRES 13 B 485 LYS GLU LYS HIS GLY TYR ASN MET GLU GLN ALA LEU GLY SEQRES 14 B 485 MET LEU PHE TRP HIS LYS HIS ASN ILE GLU LYS SER LEU SEQRES 15 B 485 ALA ASP LEU PRO ASN PHE THR PRO PHE PRO ASP GLU TRP SEQRES 16 B 485 THR VAL GLU ASP LYS VAL LEU PHE GLU GLN ALA PHE SER SEQRES 17 B 485 PHE HIS GLY LYS THR PHE HIS ARG ILE GLN GLN MET LEU SEQRES 18 B 485 PRO ASP LYS SER ILE ALA SER LEU VAL LYS PHE TYR TYR SEQRES 19 B 485 SER TRP LYS LYS THR ARG THR LYS THR SER VAL MET ASP SEQRES 20 B 485 ARG HIS ALA ARG LYS GLN LYS ARG GLU ARG GLU GLU SER SEQRES 21 B 485 GLU ASP GLU LEU GLU GLU ALA ASN GLY ASN ASN PRO ILE SEQRES 22 B 485 ASP ILE GLU VAL ASP GLN ASN LYS GLU SER LYS LYS GLU SEQRES 23 B 485 VAL PRO PRO THR GLU THR VAL PRO GLN VAL LYS LYS GLU SEQRES 24 B 485 LYS HIS SER THR GLN ALA LYS ASN ARG ALA LYS ARG LYS SEQRES 25 B 485 PRO PRO LYS GLY MET PHE LEU SER GLN GLU ASP VAL GLU SEQRES 26 B 485 ALA VAL SER ALA ASN ALA THR ALA ALA THR THR VAL LEU SEQRES 27 B 485 ARG GLN LEU ASP MET GLU LEU VAL SER VAL LYS ARG GLN SEQRES 28 B 485 ILE GLN ASN ILE LYS GLN THR ASN SER ALA LEU LYS GLU SEQRES 29 B 485 LYS LEU ASP GLY GLY ILE GLU PRO TYR ARG LEU PRO GLU SEQRES 30 B 485 VAL ILE GLN LYS CYS ASN ALA ARG TRP THR THR GLU GLU SEQRES 31 B 485 GLN LEU LEU ALA VAL GLN ALA ILE ARG LYS TYR GLY ARG SEQRES 32 B 485 ASP PHE GLN ALA ILE SER ASP VAL ILE GLY ASN LYS SER SEQRES 33 B 485 VAL VAL GLN VAL LYS ASN PHE PHE VAL ASN TYR ARG ARG SEQRES 34 B 485 ARG PHE ASN ILE ASP GLU VAL LEU GLN GLU TRP GLU ALA SEQRES 35 B 485 GLU HIS GLY LYS GLU GLU THR ASN GLY PRO SER ASN GLN SEQRES 36 B 485 LYS PRO VAL LYS SER PRO ASP ASN SER ILE LYS MET PRO SEQRES 37 B 485 GLU GLU GLU ASP GLU ALA PRO VAL LEU ASP VAL ARG TYR SEQRES 38 B 485 ALA SER ALA SER HET FAD A 901 53 HET NY8 A 902 39 HET NY8 A 903 39 HET NY8 A 904 39 HET PO4 A 905 5 HET CL A 906 1 HET CL A 907 1 HET CL A 908 1 HET CL A 909 1 HET CL A 910 1 HET GOL A 911 6 HET DMS A 912 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NY8 ~{N}2-[3-(DIMETHYLAMINO)PROPYL]-6,7-DIMETHOXY-~{N}4-[1- HETNAM 2 NY8 (NAPHTHALEN-2-YLMETHYL)PIPERIDIN-4-YL]QUINAZOLINE-2,4- HETNAM 3 NY8 DIAMINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NY8 3(C31 H40 N6 O2) FORMUL 7 PO4 O4 P 3- FORMUL 8 CL 5(CL 1-) FORMUL 13 GOL C3 H8 O3 FORMUL 14 DMS C2 H6 O S FORMUL 15 HOH *36(H2 O) HELIX 1 AA1 GLY A 173 SER A 181 1 9 HELIX 2 AA2 THR A 189 PHE A 196 1 8 HELIX 3 AA3 PHE A 196 SER A 201 1 6 HELIX 4 AA4 PRO A 203 ASN A 224 1 22 HELIX 5 AA5 THR A 230 LEU A 238 1 9 HELIX 6 AA6 ASP A 245 HIS A 259 1 15 HELIX 7 AA7 GLY A 287 PHE A 300 1 14 HELIX 8 AA8 ASN A 340 VAL A 349 1 10 HELIX 9 AA9 PRO A 371 GLN A 395 1 25 HELIX 10 AB1 SER A 407 VAL A 468 1 62 HELIX 11 AB2 ASP A 473 ASN A 514 1 42 HELIX 12 AB3 SER A 522 ASN A 540 1 19 HELIX 13 AB4 ASP A 555 GLU A 559 5 5 HELIX 14 AB5 SER A 572 ALA A 579 1 8 HELIX 15 AB6 PRO A 626 GLN A 632 1 7 HELIX 16 AB7 PRO A 644 MET A 654 1 11 HELIX 17 AB8 ALA A 708 ASN A 717 1 10 HELIX 18 AB9 SER A 719 GLY A 736 1 18 HELIX 19 AC1 SER A 737 VAL A 740 5 4 HELIX 20 AC2 GLY A 770 GLN A 778 1 9 HELIX 21 AC3 GLY A 800 ILE A 804 5 5 HELIX 22 AC4 THR A 810 GLY A 831 1 22 HELIX 23 AC5 ALA A 832 LEU A 836 5 5 HELIX 24 AC6 SER B 317 ALA B 326 1 10 HELIX 25 AC7 THR B 329 LEU B 363 1 35 HELIX 26 AC8 ILE B 367 ARG B 371 5 5 HELIX 27 AC9 THR B 384 GLY B 399 1 16 HELIX 28 AD1 ASP B 401 GLY B 410 1 10 HELIX 29 AD2 SER B 413 TYR B 424 1 12 HELIX 30 AD3 ASN B 429 HIS B 441 1 13 SHEET 1 AA1 5 ILE A 584 LYS A 585 0 SHEET 2 AA1 5 ASP A 303 LEU A 307 1 N LEU A 306 O LYS A 585 SHEET 3 AA1 5 LYS A 280 ILE A 284 1 N ILE A 283 O THR A 305 SHEET 4 AA1 5 ALA A 620 CYS A 623 1 O LEU A 622 N ILE A 282 SHEET 5 AA1 5 LEU A 796 PHE A 798 1 O PHE A 797 N CYS A 623 SHEET 1 AA2 2 THR A 319 LYS A 322 0 SHEET 2 AA2 2 TYR A 325 ASP A 328 -1 O ALA A 327 N PHE A 320 SHEET 1 AA3 3 VAL A 333 VAL A 334 0 SHEET 2 AA3 3 LEU A 565 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 AA3 3 LEU A 353 LYS A 355 -1 N ALA A 354 O THR A 566 SHEET 1 AA4 2 VAL A 400 LEU A 401 0 SHEET 2 AA4 2 LYS A 404 PRO A 405 -1 O LYS A 404 N LEU A 401 SHEET 1 AA5 4 THR A 613 CYS A 618 0 SHEET 2 AA5 4 GLY A 599 ASN A 606 -1 N VAL A 602 O TYR A 616 SHEET 3 AA5 4 THR A 588 THR A 596 -1 N ARG A 594 O GLU A 601 SHEET 4 AA5 4 GLN A 638 VAL A 640 1 O VAL A 640 N VAL A 593 SHEET 1 AA6 2 GLY A 655 PHE A 656 0 SHEET 2 AA6 2 SER A 762 TYR A 763 -1 O TYR A 763 N GLY A 655 SHEET 1 AA7 5 LEU A 677 GLY A 679 0 SHEET 2 AA7 5 LEU A 693 ASN A 696 -1 O PHE A 694 N PHE A 678 SHEET 3 AA7 5 ILE A 702 VAL A 707 -1 O LEU A 704 N TRP A 695 SHEET 4 AA7 5 ASN A 660 CYS A 665 -1 N LEU A 664 O LEU A 703 SHEET 5 AA7 5 GLU A 745 VAL A 748 -1 O VAL A 747 N VAL A 663 CISPEP 1 ALA A 240 PRO A 241 0 -8.85 CISPEP 2 PRO A 470 PRO A 471 0 -16.75 CISPEP 3 GLN A 633 PRO A 634 0 -10.41 CISPEP 4 VAL A 640 PRO A 641 0 -7.10 SITE 1 AC1 35 GLY A 285 GLY A 287 VAL A 288 SER A 289 SITE 2 AC1 35 LEU A 307 GLU A 308 ALA A 309 ARG A 310 SITE 3 AC1 35 GLY A 314 GLY A 315 ARG A 316 LEU A 329 SITE 4 AC1 35 GLY A 330 ALA A 331 MET A 332 VAL A 333 SITE 5 AC1 35 THR A 588 ALA A 589 VAL A 590 THR A 624 SITE 6 AC1 35 LEU A 625 PRO A 626 TRP A 756 SER A 760 SITE 7 AC1 35 TYR A 761 GLY A 800 GLU A 801 ALA A 809 SITE 8 AC1 35 THR A 810 VAL A 811 ALA A 814 NY8 A 902 SITE 9 AC1 35 HOH A1001 HOH A1004 HOH A1005 SITE 1 AC2 12 ASN A 383 LEU A 386 ASN A 535 LEU A 536 SITE 2 AC2 12 PHE A 538 ALA A 539 ASN A 540 TRP A 552 SITE 3 AC2 12 ASP A 555 ASP A 556 FAD A 901 NY8 A 903 SITE 1 AC3 6 GLN A 358 ALA A 539 ASP A 556 GLU A 559 SITE 2 AC3 6 NY8 A 902 NY8 A 904 SITE 1 AC4 4 ASP A 557 PHE A 558 GLU A 559 NY8 A 903 SITE 1 AC5 7 LYS A 469 PRO A 471 LYS A 631 GLN A 652 SITE 2 AC5 7 ARG A 653 MET A 654 ALA A 765 SITE 1 AC6 1 ARG A 472 SITE 1 AC7 3 GLU A 413 ARG A 526 ARG A 688 SITE 1 AC8 3 ARG A 310 ARG A 312 GOL A 911 SITE 1 AC9 3 ARG A 310 TRP A 756 CL A 910 SITE 1 AD1 4 ARG A 750 TRP A 751 ASP A 754 HOH A1007 CRYST1 121.578 176.862 233.495 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004283 0.00000