HEADER HYDROLASE 09-JAN-20 6TVE TITLE UNLIGANDED HUMAN CD73 (5'-NUCLEOTIDASE) IN THE OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: P; COMPND 4 SYNONYM: 5'-NT,ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CONSTRUCT 2.71 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EN, E5NT, DIZINC, ECTO-NUCLEOTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SCALETTI,N.STRATER REVDAT 4 09-OCT-24 6TVE 1 REMARK REVDAT 3 24-JAN-24 6TVE 1 REMARK REVDAT 2 08-APR-20 6TVE 1 JRNL REVDAT 1 19-FEB-20 6TVE 0 JRNL AUTH S.BHATTARAI,J.PIPPEL,E.SCALETTI,R.IDRIS,M.FREUNDLIEB, JRNL AUTH 2 G.ROLSHOVEN,C.RENN,S.Y.LEE,A.ABDELRAHMAN,H.ZIMMERMANN, JRNL AUTH 3 A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL 2-SUBSTITUTED ALPHA , BETA-METHYLENE-ADP DERIVATIVES: POTENT JRNL TITL 2 COMPETITIVE ECTO-5'-NUCLEOTIDASE (CD73) INHIBITORS WITH JRNL TITL 3 VARIABLE BINDING MODES. JRNL REF J.MED.CHEM. V. 63 2941 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32045236 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01611 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 267195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.133 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 13442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8400 - 3.2700 1.00 9085 459 0.1432 0.1584 REMARK 3 2 3.2700 - 2.5900 1.00 8815 434 0.1260 0.1379 REMARK 3 3 2.5900 - 2.2600 1.00 8744 431 0.1153 0.1367 REMARK 3 4 2.2600 - 2.0600 1.00 8671 471 0.1050 0.1220 REMARK 3 5 2.0600 - 1.9100 1.00 8646 472 0.1030 0.1146 REMARK 3 6 1.9100 - 1.8000 1.00 8600 467 0.0995 0.1198 REMARK 3 7 1.8000 - 1.7100 1.00 8570 488 0.0979 0.1082 REMARK 3 8 1.7100 - 1.6300 1.00 8583 440 0.0928 0.1049 REMARK 3 9 1.6300 - 1.5700 0.99 8513 490 0.0890 0.1076 REMARK 3 10 1.5700 - 1.5200 0.99 8525 478 0.0877 0.0996 REMARK 3 11 1.5200 - 1.4700 0.99 8470 468 0.0881 0.1041 REMARK 3 12 1.4700 - 1.4300 0.99 8552 424 0.0911 0.1030 REMARK 3 13 1.4300 - 1.3900 0.99 8510 423 0.0927 0.1108 REMARK 3 14 1.3900 - 1.3600 0.99 8494 432 0.0968 0.1102 REMARK 3 15 1.3600 - 1.3200 0.99 8454 439 0.0987 0.1111 REMARK 3 16 1.3200 - 1.3000 0.98 8403 422 0.1003 0.1310 REMARK 3 17 1.3000 - 1.2700 0.98 8452 419 0.1052 0.1202 REMARK 3 18 1.2700 - 1.2500 0.98 8378 453 0.1094 0.1320 REMARK 3 19 1.2500 - 1.2200 0.98 8384 442 0.1153 0.1329 REMARK 3 20 1.2200 - 1.2000 0.98 8404 432 0.1187 0.1289 REMARK 3 21 1.2000 - 1.1800 0.98 8334 454 0.1216 0.1364 REMARK 3 22 1.1800 - 1.1700 0.98 8352 438 0.1244 0.1433 REMARK 3 23 1.1700 - 1.1500 0.98 8398 419 0.1294 0.1414 REMARK 3 24 1.1500 - 1.1300 0.98 8279 467 0.1396 0.1577 REMARK 3 25 1.1300 - 1.1200 0.97 8300 423 0.1447 0.1554 REMARK 3 26 1.1200 - 1.1000 0.97 8242 459 0.1539 0.1696 REMARK 3 27 1.1000 - 1.0900 0.97 8270 485 0.1698 0.1793 REMARK 3 28 1.0900 - 1.0800 0.97 8237 460 0.1902 0.1992 REMARK 3 29 1.0800 - 1.0600 0.97 8213 436 0.2193 0.2325 REMARK 3 30 1.0600 - 1.0500 0.93 7875 417 0.2388 0.2490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.076 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4411 REMARK 3 ANGLE : 0.998 6021 REMARK 3 CHIRALITY : 0.084 667 REMARK 3 PLANARITY : 0.007 797 REMARK 3 DIHEDRAL : 17.562 1617 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 267271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 32.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.93 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 2H2G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.8, PEG6000, 100 MM REMARK 280 GLY-PRO, 10 % DMSO. THE GLY-PRO DIPEPTIDE WAS ADDED AS PART OF REMARK 280 FRAGMENT SCREENING EXPERIMENT BUT DID NOT BIND TO THE PROTEIN., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.65800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.65800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.31600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET P 4 REMARK 465 ALA P 5 REMARK 465 HIS P 6 REMARK 465 HIS P 7 REMARK 465 HIS P 8 REMARK 465 HIS P 9 REMARK 465 HIS P 10 REMARK 465 HIS P 11 REMARK 465 VAL P 12 REMARK 465 GLY P 13 REMARK 465 THR P 14 REMARK 465 GLY P 15 REMARK 465 SER P 16 REMARK 465 ASN P 17 REMARK 465 ASP P 18 REMARK 465 ASP P 19 REMARK 465 ASP P 20 REMARK 465 ASP P 21 REMARK 465 LYS P 22 REMARK 465 SER P 23 REMARK 465 PRO P 24 REMARK 465 ASP P 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS P 50 CD CE NZ REMARK 470 VAL P 52 CG1 REMARK 470 ARG P 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS P 97 NZ REMARK 470 ARG P 109 CZ NH1 NH2 REMARK 470 GLU P 125 CG CD OE1 OE2 REMARK 470 ASP P 168 CG OD1 OD2 REMARK 470 LYS P 179 CE NZ REMARK 470 LYS P 232 NZ REMARK 470 LYS P 256 CG CD CE NZ REMARK 470 ASP P 271 CG OD1 OD2 REMARK 470 GLU P 296 CG CD OE1 OE2 REMARK 470 ARG P 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS P 326 CE NZ REMARK 470 LYS P 330 CE NZ REMARK 470 GLU P 378 CG CD OE1 OE2 REMARK 470 LYS P 464 CG CD CE NZ REMARK 470 LYS P 512 CE NZ REMARK 470 LYS P 536 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR P 30 OE1 GLU P 75 1.60 REMARK 500 OE2 GLU P 75 HH TYR P 289 1.60 REMARK 500 OE2 GLU P 75 OH TYR P 289 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN P 88 125.14 79.18 REMARK 500 SER P 185 -167.57 -176.64 REMARK 500 HIS P 243 -47.64 82.72 REMARK 500 SER P 255 -149.52 -143.87 REMARK 500 ALA P 280 53.70 -141.85 REMARK 500 TYR P 281 -123.73 60.50 REMARK 500 ASN P 306 148.96 -177.58 REMARK 500 ASN P 402 55.89 -92.54 REMARK 500 LYS P 536 -51.07 74.39 REMARK 500 TYR P 539 54.41 -154.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 36 OD1 REMARK 620 2 HIS P 38 NE2 115.9 REMARK 620 3 ASP P 85 OD2 92.8 93.0 REMARK 620 4 HOH P 733 O 99.0 143.8 75.1 REMARK 620 5 HOH P 741 O 98.0 89.8 166.4 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 85 OD2 REMARK 620 2 ASN P 117 OD1 96.1 REMARK 620 3 HIS P 220 NE2 89.2 95.8 REMARK 620 4 HIS P 243 ND1 168.3 92.4 98.0 REMARK 620 5 HOH P 733 O 75.8 133.7 128.9 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN P 213 O REMARK 620 2 ASP P 237 OD1 135.3 REMARK 620 3 ASP P 237 OD2 83.4 52.8 REMARK 620 4 GLY P 298 O 84.2 88.7 92.1 REMARK 620 5 HOH P 771 O 86.0 99.3 88.2 170.1 REMARK 620 6 HOH P 991 O 79.6 143.4 162.8 83.8 93.0 REMARK 620 7 HOH P1116 O 152.0 72.3 124.6 93.2 94.7 72.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA P 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN P 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN P 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL P 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL P 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL P 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS P 614 DBREF 6TVE P 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 6TVE MET P 4 UNP P21589 INITIATING METHIONINE SEQADV 6TVE ALA P 5 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 6 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 7 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 8 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 9 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 10 UNP P21589 EXPRESSION TAG SEQADV 6TVE HIS P 11 UNP P21589 EXPRESSION TAG SEQADV 6TVE VAL P 12 UNP P21589 EXPRESSION TAG SEQADV 6TVE GLY P 13 UNP P21589 EXPRESSION TAG SEQADV 6TVE THR P 14 UNP P21589 EXPRESSION TAG SEQADV 6TVE GLY P 15 UNP P21589 EXPRESSION TAG SEQADV 6TVE SER P 16 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASN P 17 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 18 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 19 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 20 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 21 UNP P21589 EXPRESSION TAG SEQADV 6TVE LYS P 22 UNP P21589 EXPRESSION TAG SEQADV 6TVE SER P 23 UNP P21589 EXPRESSION TAG SEQADV 6TVE PRO P 24 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 25 UNP P21589 EXPRESSION TAG SEQADV 6TVE PRO P 26 UNP P21589 EXPRESSION TAG SEQADV 6TVE ASP P 53 UNP P21589 ASN 53 CONFLICT SEQADV 6TVE SER P 145 UNP P21589 LYS 145 CONFLICT SEQADV 6TVE SER P 147 UNP P21589 LYS 147 CONFLICT SEQADV 6TVE ASP P 311 UNP P21589 ASN 311 CONFLICT SEQADV 6TVE ASP P 333 UNP P21589 ASN 333 CONFLICT SEQADV 6TVE ALA P 376 UNP P21589 THR 376 CONFLICT SEQADV 6TVE ASP P 403 UNP P21589 ASN 403 CONFLICT SEQADV 6TVE SER P 478 UNP P21589 LYS 478 CONFLICT SEQRES 1 P 546 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 P 546 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO TRP GLU LEU SEQRES 3 P 546 THR ILE LEU HIS THR ASN ASP VAL HIS SER ARG LEU GLU SEQRES 4 P 546 GLN THR SER GLU ASP SER SER LYS CYS VAL ASP ALA SER SEQRES 5 P 546 ARG CYS MET GLY GLY VAL ALA ARG LEU PHE THR LYS VAL SEQRES 6 P 546 GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL LEU LEU LEU SEQRES 7 P 546 ASP ALA GLY ASP GLN TYR GLN GLY THR ILE TRP PHE THR SEQRES 8 P 546 VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE MET ASN ALA SEQRES 9 P 546 LEU ARG TYR ASP ALA MET ALA LEU GLY ASN HIS GLU PHE SEQRES 10 P 546 ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO LEU LEU LYS SEQRES 11 P 546 GLU ALA LYS PHE PRO ILE LEU SER ALA ASN ILE SER ALA SEQRES 12 P 546 SER GLY PRO LEU ALA SER GLN ILE SER GLY LEU TYR LEU SEQRES 13 P 546 PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU VAL VAL GLY SEQRES 14 P 546 ILE VAL GLY TYR THR SER LYS GLU THR PRO PHE LEU SER SEQRES 15 P 546 ASN PRO GLY THR ASN LEU VAL PHE GLU ASP GLU ILE THR SEQRES 16 P 546 ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS THR LEU ASN SEQRES 17 P 546 VAL ASN LYS ILE ILE ALA LEU GLY HIS SER GLY PHE GLU SEQRES 18 P 546 MET ASP LYS LEU ILE ALA GLN LYS VAL ARG GLY VAL ASP SEQRES 19 P 546 VAL VAL VAL GLY GLY HIS SER ASN THR PHE LEU TYR THR SEQRES 20 P 546 GLY ASN PRO PRO SER LYS GLU VAL PRO ALA GLY LYS TYR SEQRES 21 P 546 PRO PHE ILE VAL THR SER ASP ASP GLY ARG LYS VAL PRO SEQRES 22 P 546 VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR LEU GLY TYR SEQRES 23 P 546 LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN VAL ILE SER SEQRES 24 P 546 SER HIS GLY ASN PRO ILE LEU LEU ASP SER SER ILE PRO SEQRES 25 P 546 GLU ASP PRO SER ILE LYS ALA ASP ILE ASN LYS TRP ARG SEQRES 26 P 546 ILE LYS LEU ASP ASP TYR SER THR GLN GLU LEU GLY LYS SEQRES 27 P 546 THR ILE VAL TYR LEU ASP GLY SER SER GLN SER CYS ARG SEQRES 28 P 546 PHE ARG GLU CYS ASN MET GLY ASN LEU ILE CYS ASP ALA SEQRES 29 P 546 MET ILE ASN ASN ASN LEU ARG HIS ALA ASP GLU MET PHE SEQRES 30 P 546 TRP ASN HIS VAL SER MET CYS ILE LEU ASN GLY GLY GLY SEQRES 31 P 546 ILE ARG SER PRO ILE ASP GLU ARG ASN ASP GLY THR ILE SEQRES 32 P 546 THR TRP GLU ASN LEU ALA ALA VAL LEU PRO PHE GLY GLY SEQRES 33 P 546 THR PHE ASP LEU VAL GLN LEU LYS GLY SER THR LEU LYS SEQRES 34 P 546 LYS ALA PHE GLU HIS SER VAL HIS ARG TYR GLY GLN SER SEQRES 35 P 546 THR GLY GLU PHE LEU GLN VAL GLY GLY ILE HIS VAL VAL SEQRES 36 P 546 TYR ASP LEU SER ARG LYS PRO GLY ASP ARG VAL VAL LYS SEQRES 37 P 546 LEU ASP VAL LEU CYS THR SER CYS ARG VAL PRO SER TYR SEQRES 38 P 546 ASP PRO LEU LYS MET ASP GLU VAL TYR LYS VAL ILE LEU SEQRES 39 P 546 PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY PHE GLN MET SEQRES 40 P 546 ILE LYS ASP GLU LEU LEU ARG HIS ASP SER GLY ASP GLN SEQRES 41 P 546 ASP ILE ASN VAL VAL SER THR TYR ILE SER LYS MET LYS SEQRES 42 P 546 VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE LYS PHE SER HET CA P 601 1 HET ZN P 602 1 HET ZN P 603 1 HET DMS P 604 10 HET GOL P 605 14 HET DMS P 606 10 HET DMS P 607 10 HET DMS P 608 10 HET DMS P 609 10 HET GOL P 610 13 HET DMS P 611 10 HET GOL P 612 14 HET DMS P 613 10 HET DMS P 614 10 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 DMS 8(C2 H6 O S) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 16 HOH *685(H2 O) HELIX 1 AA1 ASP P 53 CYS P 57 5 5 HELIX 2 AA2 GLY P 60 GLU P 75 1 16 HELIX 3 AA3 THR P 90 LYS P 97 1 8 HELIX 4 AA4 GLY P 98 ARG P 109 1 12 HELIX 5 AA5 GLY P 116 ASP P 121 5 6 HELIX 6 AA6 VAL P 124 GLU P 129 1 6 HELIX 7 AA7 PRO P 130 ALA P 135 1 6 HELIX 8 AA8 SER P 147 SER P 155 1 9 HELIX 9 AA9 GLU P 180 SER P 185 1 6 HELIX 10 AB1 ASP P 195 LEU P 210 1 16 HELIX 11 AB2 GLY P 222 VAL P 233 1 12 HELIX 12 AB3 ASP P 317 THR P 336 1 20 HELIX 13 AB4 SER P 349 ARG P 354 1 6 HELIX 14 AB5 CYS P 358 ASN P 372 1 15 HELIX 15 AB6 GLY P 392 ILE P 394 5 3 HELIX 16 AB7 TRP P 408 LEU P 415 1 8 HELIX 17 AB8 GLY P 428 VAL P 439 1 12 HELIX 18 AB9 ASN P 499 ASN P 503 1 5 HELIX 19 AC1 GLY P 504 GLY P 507 5 4 HELIX 20 AC2 PHE P 508 LEU P 515 1 8 HELIX 21 AC3 ASP P 524 LYS P 536 1 13 SHEET 1 AA1 6 ILE P 139 LEU P 140 0 SHEET 2 AA1 6 ALA P 112 ALA P 114 1 N MET P 113 O LEU P 140 SHEET 3 AA1 6 VAL P 78 ASP P 82 1 N ASP P 82 O ALA P 114 SHEET 4 AA1 6 TRP P 27 THR P 34 1 N LEU P 32 O LEU P 79 SHEET 5 AA1 6 TYR P 286 PHE P 294 -1 O LEU P 290 N ILE P 31 SHEET 6 AA1 6 VAL P 300 GLY P 305 -1 O ILE P 301 N GLU P 293 SHEET 1 AA2 6 ILE P 139 LEU P 140 0 SHEET 2 AA2 6 ALA P 112 ALA P 114 1 N MET P 113 O LEU P 140 SHEET 3 AA2 6 VAL P 78 ASP P 82 1 N ASP P 82 O ALA P 114 SHEET 4 AA2 6 TRP P 27 THR P 34 1 N LEU P 32 O LEU P 79 SHEET 5 AA2 6 TYR P 286 PHE P 294 -1 O LEU P 290 N ILE P 31 SHEET 6 AA2 6 ILE P 308 LEU P 309 -1 O ILE P 308 N LEU P 287 SHEET 1 AA3 2 ILE P 144 SER P 145 0 SHEET 2 AA3 2 VAL P 192 PHE P 193 -1 O VAL P 192 N SER P 145 SHEET 1 AA4 6 TYR P 161 VAL P 166 0 SHEET 2 AA4 6 GLU P 169 THR P 177 -1 O VAL P 171 N LEU P 164 SHEET 3 AA4 6 ILE P 215 HIS P 220 1 O ILE P 216 N GLY P 172 SHEET 4 AA4 6 VAL P 238 VAL P 240 1 O VAL P 240 N ALA P 217 SHEET 5 AA4 6 LYS P 274 VAL P 278 1 O VAL P 278 N VAL P 239 SHEET 6 AA4 6 PHE P 265 THR P 268 -1 N VAL P 267 O VAL P 275 SHEET 1 AA5 3 THR P 405 THR P 407 0 SHEET 2 AA5 3 GLU P 338 THR P 342 -1 N LEU P 339 O ILE P 406 SHEET 3 AA5 3 VAL P 537 ILE P 538 1 O ILE P 538 N LYS P 341 SHEET 1 AA6 2 CYS P 387 ASN P 390 0 SHEET 2 AA6 2 LEU P 450 GLY P 453 -1 O GLN P 451 N LEU P 389 SHEET 1 AA7 3 VAL P 492 PRO P 498 0 SHEET 2 AA7 3 THR P 420 LYS P 427 -1 N LEU P 426 O TYR P 493 SHEET 3 AA7 3 ARG P 517 GLN P 523 -1 O ASP P 519 N LEU P 423 SHEET 1 AA8 4 TYR P 484 PRO P 486 0 SHEET 2 AA8 4 VAL P 469 LEU P 475 -1 N VAL P 474 O ASP P 485 SHEET 3 AA8 4 ILE P 455 TYR P 459 -1 N HIS P 456 O ASP P 473 SHEET 4 AA8 4 ILE P 546 PHE P 548 1 O LYS P 547 N TYR P 459 SSBOND 1 CYS P 51 CYS P 57 1555 1555 2.03 SSBOND 2 CYS P 353 CYS P 358 1555 1555 2.07 SSBOND 3 CYS P 365 CYS P 387 1555 1555 2.04 SSBOND 4 CYS P 476 CYS P 479 1555 1555 2.05 LINK OD1 ASP P 36 ZN ZN P 603 1555 1555 1.99 LINK NE2 HIS P 38 ZN ZN P 603 1555 1555 2.05 LINK OD2 ASP P 85 ZN ZN P 602 1555 1555 2.21 LINK OD2 ASP P 85 ZN ZN P 603 1555 1555 2.25 LINK OD1 ASN P 117 ZN ZN P 602 1555 1555 2.07 LINK O ASN P 213 CA CA P 601 1555 1555 2.35 LINK NE2 HIS P 220 ZN ZN P 602 1555 1555 2.04 LINK OD1 ASP P 237 CA CA P 601 1555 1555 2.45 LINK OD2 ASP P 237 CA CA P 601 1555 1555 2.49 LINK ND1 HIS P 243 ZN ZN P 602 1555 1555 2.12 LINK O GLY P 298 CA CA P 601 1555 1555 2.34 LINK CA CA P 601 O HOH P 771 1555 1555 2.32 LINK CA CA P 601 O HOH P 991 1555 1555 2.40 LINK CA CA P 601 O HOH P1116 1555 1555 2.50 LINK ZN ZN P 602 O HOH P 733 1555 1555 1.99 LINK ZN ZN P 603 O HOH P 733 1555 1555 1.98 LINK ZN ZN P 603 O HOH P 741 1555 1555 2.12 CISPEP 1 GLU P 129 PRO P 130 0 9.18 CISPEP 2 TYR P 263 PRO P 264 0 -10.07 SITE 1 AC1 6 ASN P 213 ASP P 237 GLY P 298 HOH P 771 SITE 2 AC1 6 HOH P 991 HOH P1116 SITE 1 AC2 7 ASP P 36 ASP P 85 ASN P 117 HIS P 220 SITE 2 AC2 7 HIS P 243 ZN P 603 HOH P 733 SITE 1 AC3 7 ASP P 36 HIS P 38 ASP P 85 SER P 520 SITE 2 AC3 7 ZN P 602 HOH P 733 HOH P 741 SITE 1 AC4 6 PHE P 65 ARG P 72 ALA P 107 LEU P 108 SITE 2 AC4 6 ARG P 109 HOH P 959 SITE 1 AC5 10 GLN P 88 ASP P 121 ASN P 122 ASN P 371 SITE 2 AC5 10 ASP P 522 ASN P 526 THR P 530 HOH P 954 SITE 3 AC5 10 HOH P 957 HOH P1169 SITE 1 AC6 6 ARG P 72 ARG P 73 ALA P 74 PRO P 76 SITE 2 AC6 6 PRO P 149 GLN P 153 SITE 1 AC7 5 TYR P 334 GLN P 337 GLU P 338 LEU P 339 SITE 2 AC7 5 HOH P 721 SITE 1 AC8 5 TYR P 281 ASN P 499 ASN P 503 HOH P 772 SITE 2 AC8 5 HOH P1202 SITE 1 AC9 7 ARG P 40 ASP P 47 PHE P 417 ASN P 499 SITE 2 AC9 7 PHE P 500 HOH P 881 HOH P1200 SITE 1 AD1 3 TYR P 96 TRP P 327 HOH P 701 SITE 1 AD2 6 MET P 535 ILE P 538 TYR P 539 PRO P 540 SITE 2 AD2 6 HOH P 962 HOH P1117 SITE 1 AD3 8 VAL P 78 LEU P 79 ASP P 111 PRO P 165 SITE 2 AD3 8 VAL P 166 GLY P 167 HOH P 893 HOH P 934 SITE 1 AD4 4 SER P 155 GLY P 156 TYR P 158 HOH P1006 SITE 1 AD5 5 HIS P 456 GLU P 543 GLY P 544 LYS P 547 SITE 2 AD5 5 HOH P1151 CRYST1 67.316 131.380 66.195 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015107 0.00000