HEADER TRANSCRIPTION 10-JAN-20 6TVM TITLE LEDGF/P75 DIMER (RESIDUES 345-467) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA COMPND 5 PROTEIN,DFS 70,LENS EPITHELIUM-DERIVED GROWTH FACTOR,TRANSCRIPTIONAL COMPND 6 COACTIVATOR P75/P52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSIP1, DFS70, LEDGF, PSIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIGENETIC READER, INTEGRASE-BINDING DOMAIN, DOMAIN-SWAPPED DIMER, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR V.LUX,V.VEVERKA REVDAT 5 19-JUN-24 6TVM 1 REMARK REVDAT 4 14-JUN-23 6TVM 1 REMARK REVDAT 3 09-DEC-20 6TVM 1 JRNL REVDAT 2 30-SEP-20 6TVM 1 JRNL REVDAT 1 09-SEP-20 6TVM 0 JRNL AUTH V.LUX,T.BROUNS,K.CERMAKOVA,P.SRB,M.FABRY,M.MADLIKOVA, JRNL AUTH 2 M.HOREJSI,Z.KUKACKA,P.NOVAK,M.KUGLER,J.BRYNDA,J.DERIJCK, JRNL AUTH 3 F.CHRIST,Z.DEBYSER,V.VEVERKA JRNL TITL MOLECULAR MECHANISM OF LEDGF/P75 DIMERIZATION. JRNL REF STRUCTURE V. 28 1288 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32946742 JRNL DOI 10.1016/J.STR.2020.08.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106150. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] LEDGF, 20 REMARK 210 MM HEPES, 100 MM SODIUM CHLORIDE, REMARK 210 1 MM TCEP, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 342 -169.74 179.68 REMARK 500 1 ALA A 343 49.93 -172.48 REMARK 500 1 GLU A 345 -61.84 -143.58 REMARK 500 1 LEU A 368 107.44 -56.65 REMARK 500 1 GLN A 384 56.24 -92.64 REMARK 500 1 HIS A 393 35.55 -97.96 REMARK 500 1 LYS A 407 135.75 -176.17 REMARK 500 1 VAL A 429 85.96 59.55 REMARK 500 1 GLU A 431 134.49 -178.05 REMARK 500 1 VAL A 435 117.28 67.10 REMARK 500 1 LEU A 440 162.19 63.20 REMARK 500 1 ASN A 441 95.32 57.80 REMARK 500 1 LYS A 457 -173.99 -60.12 REMARK 500 1 ASP A 458 90.82 63.29 REMARK 500 1 ASN A 465 94.75 61.01 REMARK 500 1 ASN B 341 -170.07 -179.33 REMARK 500 1 ALA B 342 175.87 66.74 REMARK 500 1 ALA B 343 66.76 -169.04 REMARK 500 1 SER B 344 -169.90 -62.35 REMARK 500 1 GLU B 345 -63.11 -135.57 REMARK 500 1 LEU B 368 107.78 -56.55 REMARK 500 1 GLN B 384 56.48 -93.93 REMARK 500 1 HIS B 393 35.55 -98.18 REMARK 500 1 LYS B 407 134.37 -176.70 REMARK 500 1 VAL B 429 86.72 59.66 REMARK 500 1 GLU B 431 130.27 -179.35 REMARK 500 1 SER B 434 35.17 -143.52 REMARK 500 1 VAL B 435 90.05 -169.64 REMARK 500 1 LEU B 440 162.23 63.08 REMARK 500 1 ASN B 441 95.76 58.06 REMARK 500 1 LYS B 457 -174.00 -59.89 REMARK 500 1 ASP B 458 91.12 63.25 REMARK 500 1 ASN B 465 94.80 61.38 REMARK 500 2 SER A 344 166.39 63.50 REMARK 500 2 GLU A 345 -175.03 67.75 REMARK 500 2 LEU A 368 107.79 -53.52 REMARK 500 2 HIS A 393 35.62 -95.27 REMARK 500 2 LYS A 407 134.00 -175.40 REMARK 500 2 VAL A 429 88.61 55.76 REMARK 500 2 VAL A 439 50.63 -116.03 REMARK 500 2 LYS A 457 147.41 -173.73 REMARK 500 2 GLN A 459 -64.56 -135.06 REMARK 500 2 ASN A 465 70.51 63.67 REMARK 500 2 LYS A 466 169.62 65.95 REMARK 500 2 SER B 344 77.64 51.95 REMARK 500 2 GLU B 345 163.14 177.66 REMARK 500 2 LEU B 368 107.71 -53.68 REMARK 500 2 HIS B 393 35.52 -95.23 REMARK 500 2 LYS B 407 134.03 -175.67 REMARK 500 2 VAL B 429 89.27 55.49 REMARK 500 REMARK 500 THIS ENTRY HAS 862 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34475 RELATED DB: BMRB REMARK 900 LEDGF/P75 DIMER (RESIDUES 345-467) DBREF 6TVM A 345 467 UNP O75475 PSIP1_HUMAN 345 467 DBREF 6TVM B 345 467 UNP O75475 PSIP1_HUMAN 345 467 SEQADV 6TVM SER A 340 UNP O75475 EXPRESSION TAG SEQADV 6TVM ASN A 341 UNP O75475 EXPRESSION TAG SEQADV 6TVM ALA A 342 UNP O75475 EXPRESSION TAG SEQADV 6TVM ALA A 343 UNP O75475 EXPRESSION TAG SEQADV 6TVM SER A 344 UNP O75475 EXPRESSION TAG SEQADV 6TVM SER B 340 UNP O75475 EXPRESSION TAG SEQADV 6TVM ASN B 341 UNP O75475 EXPRESSION TAG SEQADV 6TVM ALA B 342 UNP O75475 EXPRESSION TAG SEQADV 6TVM ALA B 343 UNP O75475 EXPRESSION TAG SEQADV 6TVM SER B 344 UNP O75475 EXPRESSION TAG SEQRES 1 A 128 SER ASN ALA ALA SER GLU THR SER MET ASP SER ARG LEU SEQRES 2 A 128 GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS ILE SEQRES 3 A 128 ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU ASP SEQRES 4 A 128 GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA GLN SEQRES 5 A 128 LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE ARG SEQRES 6 A 128 ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER THR SEQRES 7 A 128 MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL GLY SEQRES 8 A 128 GLU GLY ASP SER VAL ILE THR GLN VAL LEU ASN LYS SER SEQRES 9 A 128 LEU ALA GLU GLN ARG GLN HIS GLU GLU ALA ASN LYS THR SEQRES 10 A 128 LYS ASP GLN GLY LYS LYS GLY PRO ASN LYS LYS SEQRES 1 B 128 SER ASN ALA ALA SER GLU THR SER MET ASP SER ARG LEU SEQRES 2 B 128 GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS ILE SEQRES 3 B 128 ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU ASP SEQRES 4 B 128 GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA GLN SEQRES 5 B 128 LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE ARG SEQRES 6 B 128 ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER THR SEQRES 7 B 128 MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL GLY SEQRES 8 B 128 GLU GLY ASP SER VAL ILE THR GLN VAL LEU ASN LYS SER SEQRES 9 B 128 LEU ALA GLU GLN ARG GLN HIS GLU GLU ALA ASN LYS THR SEQRES 10 B 128 LYS ASP GLN GLY LYS LYS GLY PRO ASN LYS LYS HELIX 1 AA1 THR A 346 LEU A 363 1 18 HELIX 2 AA2 ASP A 369 LEU A 383 1 15 HELIX 3 AA3 THR A 386 HIS A 393 1 8 HELIX 4 AA4 HIS A 393 ILE A 403 1 11 HELIX 5 AA5 SER A 409 VAL A 429 1 21 HELIX 6 AA6 ASN A 441 ALA A 453 1 13 HELIX 7 AA7 THR B 346 LEU B 363 1 18 HELIX 8 AA8 ASP B 369 LEU B 383 1 15 HELIX 9 AA9 THR B 386 HIS B 393 1 8 HELIX 10 AB1 HIS B 393 ILE B 403 1 11 HELIX 11 AB2 SER B 409 VAL B 429 1 21 HELIX 12 AB3 ASN B 441 ALA B 453 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1