HEADER TRANSCRIPTION 08-AUG-19 6TYD TITLE STRUCTURE OF HUMAN LDB1 IN COMPLEX WITH SSBP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN-BINDING PROTEIN 1; COMPND 3 CHAIN: V; COMPND 4 SYNONYM: LDB-1,CARBOXYL-TERMINAL LIM DOMAIN-BINDING PROTEIN 2,CLIM-2, COMPND 5 LIM DOMAIN-BINDING FACTOR CLIM2,HLDB1,NUCLEAR LIM INTERACTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN 2; COMPND 9 CHAIN: A, B; COMPND 10 SYNONYM: SEQUENCE-SPECIFIC SINGLE-STRANDED-DNA-BINDING PROTEIN 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LDB1, CLIM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SSBP2, SSDP2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LDB1, SSBP2, CHILS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,Z.WANG,W.XU REVDAT 3 29-JAN-20 6TYD 1 JRNL REVDAT 2 15-JAN-20 6TYD 1 JRNL REVDAT 1 01-JAN-20 6TYD 0 JRNL AUTH H.WANG,J.KIM,Z.WANG,X.X.YAN,A.DEAN,W.XU JRNL TITL CRYSTAL STRUCTURE OF HUMAN LDB1 IN COMPLEX WITH SSBP2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 1042 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31892537 JRNL DOI 10.1073/PNAS.1914181117 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.770 REMARK 3 FREE R VALUE TEST SET COUNT : 3633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8030 - 8.2867 0.99 1294 142 0.2179 0.2580 REMARK 3 2 8.2867 - 6.5846 1.00 1290 136 0.2294 0.2474 REMARK 3 3 6.5846 - 5.7543 0.99 1293 138 0.2537 0.2870 REMARK 3 4 5.7543 - 5.2292 1.00 1284 144 0.2232 0.2604 REMARK 3 5 5.2292 - 4.8549 1.00 1304 139 0.2111 0.2696 REMARK 3 6 4.8549 - 4.5689 1.00 1305 138 0.1901 0.2130 REMARK 3 7 4.5689 - 4.3403 1.00 1282 139 0.1876 0.2439 REMARK 3 8 4.3403 - 4.1516 1.00 1297 138 0.2164 0.2712 REMARK 3 9 4.1516 - 3.9918 1.00 1292 140 0.2299 0.2917 REMARK 3 10 3.9918 - 3.8542 0.99 1289 136 0.2490 0.2375 REMARK 3 11 3.8542 - 3.7337 1.00 1292 138 0.2377 0.2997 REMARK 3 12 3.7337 - 3.6271 1.00 1306 143 0.2484 0.2745 REMARK 3 13 3.6271 - 3.5316 1.00 1308 137 0.2708 0.3087 REMARK 3 14 3.5316 - 3.4455 1.00 1300 138 0.2676 0.3180 REMARK 3 15 3.4455 - 3.3672 1.00 1266 140 0.2797 0.3740 REMARK 3 16 3.3672 - 3.2956 1.00 1321 145 0.2684 0.3077 REMARK 3 17 3.2956 - 3.2297 1.00 1278 142 0.2947 0.3278 REMARK 3 18 3.2297 - 3.1687 1.00 1310 142 0.3077 0.3345 REMARK 3 19 3.1687 - 3.1122 1.00 1299 142 0.3202 0.3774 REMARK 3 20 3.1122 - 3.0594 1.00 1287 139 0.3131 0.3685 REMARK 3 21 3.0594 - 3.0101 1.00 1296 143 0.3273 0.3481 REMARK 3 22 3.0101 - 2.9638 1.00 1309 140 0.3584 0.3955 REMARK 3 23 2.9638 - 2.9202 1.00 1304 142 0.3538 0.4974 REMARK 3 24 2.9202 - 2.8791 1.00 1293 140 0.3403 0.3860 REMARK 3 25 2.8791 - 2.8402 0.99 1281 140 0.3306 0.3693 REMARK 3 26 2.8402 - 2.8033 0.92 1189 132 0.3600 0.3716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'V' AND RESID 64 THROUGH 282) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0379 40.5939 106.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.8153 T22: 0.7211 REMARK 3 T33: 0.7820 T12: 0.3438 REMARK 3 T13: 0.3477 T23: 0.1820 REMARK 3 L TENSOR REMARK 3 L11: 2.7013 L22: 4.8836 REMARK 3 L33: 3.8838 L12: -2.4845 REMARK 3 L13: 1.0256 L23: 0.6185 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: 0.0770 S13: -0.3888 REMARK 3 S21: 0.6440 S22: 0.3860 S23: 0.7593 REMARK 3 S31: -0.5933 S32: -0.7883 S33: -0.2321 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 10 THROUGH 94) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0122 55.2953 121.6992 REMARK 3 T TENSOR REMARK 3 T11: 1.2170 T22: 0.9344 REMARK 3 T33: 0.7385 T12: 0.3953 REMARK 3 T13: 0.3024 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 5.1880 L22: 4.9550 REMARK 3 L33: 1.8655 L12: 1.1588 REMARK 3 L13: -1.9520 L23: -0.6298 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.1555 S13: -0.2209 REMARK 3 S21: -0.7503 S22: -0.5644 S23: 0.0517 REMARK 3 S31: 1.1198 S32: 0.4626 S33: 0.4484 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 11 THROUGH 77) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8667 48.5870 122.6744 REMARK 3 T TENSOR REMARK 3 T11: 1.4383 T22: 1.1775 REMARK 3 T33: 1.1724 T12: 0.2518 REMARK 3 T13: 0.3251 T23: -0.1275 REMARK 3 L TENSOR REMARK 3 L11: 2.7502 L22: 3.0538 REMARK 3 L33: 3.6234 L12: -0.8031 REMARK 3 L13: -0.5275 L23: 0.4690 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: -0.3379 S13: -0.6422 REMARK 3 S21: 0.0400 S22: -0.4680 S23: 0.7612 REMARK 3 S31: 1.0873 S32: -0.5028 S33: 0.5367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM LITHIUM SULFATE MONOHYDRATE, REMARK 280 100 MM SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, 1% V/V PEG400, REMARK 280 10MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.94600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.47300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.20950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.73650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 208.68250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.94600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.47300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.73650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.20950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 208.68250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY V 55 REMARK 465 GLY V 56 REMARK 465 ILE V 57 REMARK 465 GLY V 58 REMARK 465 ARG V 59 REMARK 465 HIS V 60 REMARK 465 THR V 61 REMARK 465 PRO V 62 REMARK 465 TYR V 63 REMARK 465 ALA V 283 REMARK 465 PRO V 284 REMARK 465 PRO V 285 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 SER A 9 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 ASN B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 ARG B 78 REMARK 465 ARG B 79 REMARK 465 GLU B 80 REMARK 465 THR B 81 REMARK 465 CYS B 82 REMARK 465 GLU B 83 REMARK 465 HIS B 84 REMARK 465 SER B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 ALA B 88 REMARK 465 LYS B 89 REMARK 465 ALA B 90 REMARK 465 PHE B 91 REMARK 465 HIS B 92 REMARK 465 ASP B 93 REMARK 465 TYR B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP V 86 -154.42 -108.86 REMARK 500 LEU V 110 -132.46 59.82 REMARK 500 GLN V 161 72.42 -100.62 REMARK 500 MSE V 172 72.69 53.94 REMARK 500 MSE V 192 75.90 -68.20 REMARK 500 ARG V 202 -85.31 -102.23 REMARK 500 GLN V 203 -169.32 -105.76 REMARK 500 HIS V 216 37.15 -91.01 REMARK 500 LYS V 228 -159.72 -88.80 REMARK 500 THR V 261 -83.81 -100.80 REMARK 500 ALA A 11 -144.45 46.97 REMARK 500 GLU A 77 -122.32 62.26 REMARK 500 ARG A 79 -125.41 50.40 REMARK 500 ALA B 35 76.65 -109.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 6TYD V 56 285 UNP Q86U70 LDB1_HUMAN 20 249 DBREF 6TYD A 1 94 UNP P81877 SSBP2_HUMAN 1 94 DBREF 6TYD B 1 94 UNP P81877 SSBP2_HUMAN 1 94 SEQADV 6TYD GLY V 55 UNP Q86U70 EXPRESSION TAG SEQADV 6TYD GLY A 0 UNP P81877 EXPRESSION TAG SEQADV 6TYD GLY B 0 UNP P81877 EXPRESSION TAG SEQRES 1 V 231 GLY GLY ILE GLY ARG HIS THR PRO TYR GLY ASN GLN THR SEQRES 2 V 231 ASP TYR ARG ILE PHE GLU LEU ASN LYS ARG LEU GLN ASN SEQRES 3 V 231 TRP THR GLU GLU CYS ASP ASN LEU TRP TRP ASP ALA PHE SEQRES 4 V 231 THR THR GLU PHE PHE GLU ASP ASP ALA MSE LEU THR ILE SEQRES 5 V 231 THR PHE CYS LEU GLU ASP GLY PRO LYS ARG TYR THR ILE SEQRES 6 V 231 GLY ARG THR LEU ILE PRO ARG TYR PHE ARG SER ILE PHE SEQRES 7 V 231 GLU GLY GLY ALA THR GLU LEU TYR TYR VAL LEU LYS HIS SEQRES 8 V 231 PRO LYS GLU ALA PHE HIS SER ASN PHE VAL SER LEU ASP SEQRES 9 V 231 CYS ASP GLN GLY SER MSE VAL THR GLN HIS GLY LYS PRO SEQRES 10 V 231 MSE PHE THR GLN VAL CYS VAL GLU GLY ARG LEU TYR LEU SEQRES 11 V 231 GLU PHE MSE PHE ASP ASP MSE MSE ARG ILE LYS THR TRP SEQRES 12 V 231 HIS PHE SER ILE ARG GLN HIS ARG GLU LEU ILE PRO ARG SEQRES 13 V 231 SER ILE LEU ALA MSE HIS ALA GLN ASP PRO GLN MSE LEU SEQRES 14 V 231 ASP GLN LEU SER LYS ASN ILE THR ARG CYS GLY LEU SER SEQRES 15 V 231 ASN SER THR LEU ASN TYR LEU ARG LEU CYS VAL ILE LEU SEQRES 16 V 231 GLU PRO MSE GLN GLU LEU MSE SER ARG HIS LYS THR TYR SEQRES 17 V 231 SER LEU SER PRO ARG ASP CYS LEU LYS THR CYS LEU PHE SEQRES 18 V 231 GLN LYS TRP GLN ARG MSE VAL ALA PRO PRO SEQRES 1 A 95 GLY MET TYR GLY LYS GLY LYS SER ASN SER SER ALA VAL SEQRES 2 A 95 PRO SER ASP SER GLN ALA ARG GLU LYS LEU ALA LEU TYR SEQRES 3 A 95 VAL TYR GLU TYR LEU LEU HIS VAL GLY ALA GLN LYS SER SEQRES 4 A 95 ALA GLN THR PHE LEU SER GLU ILE ARG TRP GLU LYS ASN SEQRES 5 A 95 ILE THR LEU GLY GLU PRO PRO GLY PHE LEU HIS SER TRP SEQRES 6 A 95 TRP CYS VAL PHE TRP ASP LEU TYR CYS ALA ALA PRO GLU SEQRES 7 A 95 ARG ARG GLU THR CYS GLU HIS SER SER GLU ALA LYS ALA SEQRES 8 A 95 PHE HIS ASP TYR SEQRES 1 B 95 GLY MET TYR GLY LYS GLY LYS SER ASN SER SER ALA VAL SEQRES 2 B 95 PRO SER ASP SER GLN ALA ARG GLU LYS LEU ALA LEU TYR SEQRES 3 B 95 VAL TYR GLU TYR LEU LEU HIS VAL GLY ALA GLN LYS SER SEQRES 4 B 95 ALA GLN THR PHE LEU SER GLU ILE ARG TRP GLU LYS ASN SEQRES 5 B 95 ILE THR LEU GLY GLU PRO PRO GLY PHE LEU HIS SER TRP SEQRES 6 B 95 TRP CYS VAL PHE TRP ASP LEU TYR CYS ALA ALA PRO GLU SEQRES 7 B 95 ARG ARG GLU THR CYS GLU HIS SER SER GLU ALA LYS ALA SEQRES 8 B 95 PHE HIS ASP TYR MODRES 6TYD MSE V 103 MET MODIFIED RESIDUE MODRES 6TYD MSE V 164 MET MODIFIED RESIDUE MODRES 6TYD MSE V 172 MET MODIFIED RESIDUE MODRES 6TYD MSE V 187 MET MODIFIED RESIDUE MODRES 6TYD MSE V 191 MET MODIFIED RESIDUE MODRES 6TYD MSE V 192 MET MODIFIED RESIDUE MODRES 6TYD MSE V 215 MET MODIFIED RESIDUE MODRES 6TYD MSE V 222 MET MODIFIED RESIDUE MODRES 6TYD MSE V 252 MET MODIFIED RESIDUE MODRES 6TYD MSE V 256 MET MODIFIED RESIDUE MODRES 6TYD MSE V 281 MET MODIFIED RESIDUE HET MSE V 103 8 HET MSE V 164 8 HET MSE V 172 8 HET MSE V 187 8 HET MSE V 191 8 HET MSE V 192 8 HET MSE V 215 8 HET MSE V 222 8 HET MSE V 252 8 HET MSE V 256 8 HET MSE V 281 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) HELIX 1 AA1 THR V 67 GLN V 79 1 13 HELIX 2 AA2 ASP V 86 PHE V 97 1 12 HELIX 3 AA3 GLY V 120 THR V 122 5 3 HELIX 4 AA4 LEU V 123 GLY V 134 1 12 HELIX 5 AA5 PRO V 209 HIS V 216 1 8 HELIX 6 AA6 ASP V 219 ASP V 224 1 6 HELIX 7 AA7 GLN V 225 LYS V 228 5 4 HELIX 8 AA8 SER V 236 TYR V 262 1 27 HELIX 9 AA9 SER V 265 VAL V 282 1 18 HELIX 10 AB1 SER A 14 GLY A 34 1 21 HELIX 11 AB2 ALA A 35 ILE A 46 1 12 HELIX 12 AB3 GLY A 59 CYS A 73 1 15 HELIX 13 AB4 SER A 86 TYR A 94 1 9 HELIX 14 AB5 SER B 14 GLY B 34 1 21 HELIX 15 AB6 ALA B 35 ARG B 47 1 13 HELIX 16 AB7 GLY B 59 ALA B 75 1 17 SHEET 1 AA1 6 LYS V 115 ILE V 119 0 SHEET 2 AA1 6 PHE V 98 PHE V 108 -1 N PHE V 108 O LYS V 115 SHEET 3 AA1 6 ILE V 194 LEU V 207 1 O ILE V 201 N THR V 107 SHEET 4 AA1 6 GLN V 175 MSE V 187 -1 N GLU V 185 O LYS V 195 SHEET 5 AA1 6 PHE V 154 HIS V 168 -1 N MSE V 164 O VAL V 178 SHEET 6 AA1 6 ALA V 136 LYS V 144 -1 N THR V 137 O GLN V 167 SHEET 1 AA2 6 LYS V 115 ILE V 119 0 SHEET 2 AA2 6 PHE V 98 PHE V 108 -1 N PHE V 108 O LYS V 115 SHEET 3 AA2 6 ILE V 194 LEU V 207 1 O ILE V 201 N THR V 107 SHEET 4 AA2 6 GLN V 175 MSE V 187 -1 N GLU V 185 O LYS V 195 SHEET 5 AA2 6 PHE V 154 HIS V 168 -1 N MSE V 164 O VAL V 178 SHEET 6 AA2 6 LYS V 147 PHE V 150 -1 N ALA V 149 O SER V 156 LINK C ALA V 102 N MSE V 103 1555 1555 1.33 LINK C MSE V 103 N LEU V 104 1555 1555 1.33 LINK C SER V 163 N MSE V 164 1555 1555 1.33 LINK C MSE V 164 N VAL V 165 1555 1555 1.33 LINK C PRO V 171 N MSE V 172 1555 1555 1.33 LINK C MSE V 172 N PHE V 173 1555 1555 1.33 LINK C PHE V 186 N MSE V 187 1555 1555 1.33 LINK C MSE V 187 N PHE V 188 1555 1555 1.33 LINK C ASP V 190 N MSE V 191 1555 1555 1.33 LINK C MSE V 191 N MSE V 192 1555 1555 1.33 LINK C MSE V 192 N ARG V 193 1555 1555 1.33 LINK C ALA V 214 N MSE V 215 1555 1555 1.32 LINK C MSE V 215 N HIS V 216 1555 1555 1.34 LINK C GLN V 221 N MSE V 222 1555 1555 1.32 LINK C MSE V 222 N LEU V 223 1555 1555 1.34 LINK C PRO V 251 N MSE V 252 1555 1555 1.33 LINK C MSE V 252 N GLN V 253 1555 1555 1.33 LINK C LEU V 255 N MSE V 256 1555 1555 1.33 LINK C MSE V 256 N SER V 257 1555 1555 1.34 LINK C ARG V 280 N MSE V 281 1555 1555 1.33 LINK C MSE V 281 N VAL V 282 1555 1555 1.34 CISPEP 1 LYS V 170 PRO V 171 0 -5.24 CISPEP 2 PRO A 57 PRO A 58 0 4.66 CISPEP 3 PRO B 57 PRO B 58 0 -2.36 CRYST1 104.322 104.322 250.419 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009586 0.005534 0.000000 0.00000 SCALE2 0.000000 0.011069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003993 0.00000