HEADER DNA BINDING PROTEIN 09-AUG-19 6TYZ TITLE STRUCTURE OF KU80 VON WILLEBRAND DOMAIN COMPLEXED WITH APLF KU BINDING TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KU80 VON WILLEBRAND DOMAIN; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLU-ARG-LYS-ARG-ILE-LEU-PRO-THR-TRP-MET-LEU-ALA; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: APLF KU BINDING MOTIF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XRCC5, XRCC5-A-PROV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS KU80 VON WILLEBRAND FACTOR A DOMAIN, FLUORINE-19 NMR, KU BINDING KEYWDS 2 MOTIF, CONDITIONAL BINDING SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,L.C.PEDERSEN REVDAT 2 11-OCT-23 6TYZ 1 REMARK REVDAT 1 27-NOV-19 6TYZ 0 JRNL AUTH K.KIM,J.MIN,T.W.KIRBY,S.A.GABEL,L.C.PEDERSEN,R.E.LONDON JRNL TITL LIGAND BINDING CHARACTERISTICS OF THE KU80 VON WILLEBRAND JRNL TITL 2 DOMAIN. JRNL REF DNA REPAIR (AMST.) V. 85 02739 2019 JRNL REFN ISSN 1568-7856 JRNL PMID 31733588 JRNL DOI 10.1016/J.DNAREP.2019.102739 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.476 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4430 - 3.6390 1.00 2867 152 0.1647 0.1797 REMARK 3 2 3.6390 - 2.8892 1.00 2766 144 0.1748 0.1919 REMARK 3 3 2.8892 - 2.5242 1.00 2723 144 0.1766 0.1935 REMARK 3 4 2.5242 - 2.2935 1.00 2701 145 0.1714 0.2269 REMARK 3 5 2.2935 - 2.1292 1.00 2710 139 0.1640 0.1939 REMARK 3 6 2.1292 - 2.0037 1.00 2673 142 0.1647 0.1886 REMARK 3 7 2.0037 - 1.9034 1.00 2654 139 0.1778 0.2064 REMARK 3 8 1.9034 - 1.8205 1.00 2648 138 0.2061 0.2524 REMARK 3 9 1.8205 - 1.7504 1.00 2662 147 0.2045 0.2195 REMARK 3 10 1.7504 - 1.6900 1.00 2650 138 0.2046 0.2587 REMARK 3 11 1.6900 - 1.6372 1.00 2654 140 0.2104 0.2369 REMARK 3 12 1.6372 - 1.5904 1.00 2657 138 0.2201 0.2560 REMARK 3 13 1.5904 - 1.5485 1.00 2641 136 0.2414 0.2935 REMARK 3 14 1.5485 - 1.5108 0.98 2611 138 0.2702 0.2873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1748 REMARK 3 ANGLE : 0.832 2365 REMARK 3 CHIRALITY : 0.051 282 REMARK 3 PLANARITY : 0.005 302 REMARK 3 DIHEDRAL : 13.386 635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3144 6.7495 13.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.1563 REMARK 3 T33: 0.1588 T12: 0.0128 REMARK 3 T13: 0.0279 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5911 L22: 0.0820 REMARK 3 L33: 1.0126 L12: 0.1991 REMARK 3 L13: -0.2928 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0932 S12: 0.0174 S13: 0.0359 REMARK 3 S21: -0.2645 S22: 0.0631 S23: -0.0124 REMARK 3 S31: -0.0936 S32: -0.0526 S33: -0.0472 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0740 1.9752 5.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.2001 REMARK 3 T33: 0.1953 T12: -0.0022 REMARK 3 T13: 0.0789 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.8728 L22: 1.5314 REMARK 3 L33: 1.6509 L12: 0.4921 REMARK 3 L13: -0.3400 L23: 0.8104 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: 0.2095 S13: -0.0476 REMARK 3 S21: -0.4546 S22: -0.0638 S23: 0.0371 REMARK 3 S31: 0.0145 S32: -0.1758 S33: -0.3059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3503 -5.5132 17.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.1146 REMARK 3 T33: 0.1369 T12: -0.0041 REMARK 3 T13: 0.0128 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1321 L22: 2.4571 REMARK 3 L33: 1.1355 L12: 0.8919 REMARK 3 L13: 0.3987 L23: -1.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.1208 S12: 0.0941 S13: -0.1028 REMARK 3 S21: -0.3746 S22: -0.0177 S23: 0.1816 REMARK 3 S31: 0.2918 S32: -0.1625 S33: 0.0358 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9763 -7.3536 5.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.4359 T22: 0.4198 REMARK 3 T33: 0.2303 T12: -0.1289 REMARK 3 T13: 0.0161 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.7618 L22: 4.6185 REMARK 3 L33: 1.6551 L12: 0.4068 REMARK 3 L13: -0.3940 L23: -2.7535 REMARK 3 S TENSOR REMARK 3 S11: -0.3206 S12: 0.7330 S13: -0.0780 REMARK 3 S21: -1.1643 S22: 0.3446 S23: 0.3978 REMARK 3 S31: 0.9926 S32: -0.6684 S33: -0.3211 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5256 -5.4193 20.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.1508 REMARK 3 T33: 0.1637 T12: 0.0076 REMARK 3 T13: 0.0268 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.3842 L22: 2.1181 REMARK 3 L33: 1.6643 L12: 0.9386 REMARK 3 L13: -0.4964 L23: -0.8997 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: -0.0543 S13: -0.0295 REMARK 3 S21: -0.1685 S22: -0.0070 S23: -0.2609 REMARK 3 S31: 0.1942 S32: 0.0315 S33: -0.0468 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0151 1.3361 27.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1945 REMARK 3 T33: 0.2287 T12: 0.0163 REMARK 3 T13: -0.0378 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.2184 L22: 1.3108 REMARK 3 L33: 1.7671 L12: 0.3219 REMARK 3 L13: 0.2540 L23: 0.2754 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0161 S13: 0.0349 REMARK 3 S21: 0.1680 S22: 0.0125 S23: -0.4128 REMARK 3 S31: 0.1035 S32: 0.1652 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8256 19.6683 20.0221 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.2852 REMARK 3 T33: 0.3737 T12: 0.0135 REMARK 3 T13: -0.0306 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5769 L22: 4.9089 REMARK 3 L33: 2.7590 L12: -0.4274 REMARK 3 L13: 0.4954 L23: 2.9065 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: 0.3050 S13: -0.0002 REMARK 3 S21: -0.1323 S22: 0.3518 S23: -1.1313 REMARK 3 S31: -0.0947 S32: 0.6408 S33: 0.3277 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6883 8.3751 23.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2860 REMARK 3 T33: 0.3500 T12: -0.0129 REMARK 3 T13: -0.0567 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.3684 L22: 2.7424 REMARK 3 L33: 1.5553 L12: 0.8935 REMARK 3 L13: 0.9968 L23: -0.6907 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: 0.1595 S13: -0.1794 REMARK 3 S21: 0.0803 S22: -0.0500 S23: -0.6024 REMARK 3 S31: -0.1702 S32: 0.3595 S33: 0.0063 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2550 -2.2630 34.7806 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2177 REMARK 3 T33: 0.2020 T12: -0.0303 REMARK 3 T13: 0.0432 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.5725 L22: 0.3429 REMARK 3 L33: 0.6649 L12: 0.2763 REMARK 3 L13: -0.1658 L23: -0.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.2672 S12: -0.1379 S13: 0.2404 REMARK 3 S21: 0.1363 S22: -0.0549 S23: 0.0513 REMARK 3 S31: -0.2341 S32: -0.2004 S33: 0.0248 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9197 -12.5128 33.8453 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.1989 REMARK 3 T33: 0.2038 T12: -0.0186 REMARK 3 T13: -0.0495 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.1062 L22: 0.2352 REMARK 3 L33: 0.1450 L12: -0.0524 REMARK 3 L13: -0.0687 L23: 0.0491 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.2771 S13: -0.1990 REMARK 3 S21: 0.8006 S22: -0.0284 S23: -0.4803 REMARK 3 S31: 0.3782 S32: 0.1129 S33: 0.0029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20% (W/V) PEG4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.90350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.76350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.59450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.76350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.90350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.59450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 PHE A 236 REMARK 465 LYS A 237 REMARK 465 LYS A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 LEU B 179 REMARK 465 ALA B 180 REMARK 465 GLU B 193 REMARK 465 HIS B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 50 CE NZ REMARK 470 ARG A 69 CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ASN A 95 CG OD1 ND2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 128 CD NE CZ NH1 NH2 REMARK 470 LYS A 194 CD CE NZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 SER A 221 OG REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 227 NE CZ NH1 NH2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 183 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 11.54 -141.27 REMARK 500 ASP A 64 87.47 -156.15 REMARK 500 GLU A 70 111.05 -39.87 REMARK 500 PRO A 165 32.11 -84.52 REMARK 500 SER A 234 2.10 -69.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TYU RELATED DB: PDB REMARK 900 6TYU CONTAINS THE SAME PROTEIN COMPLEXED WITH MRI REMARK 900 RELATED ID: 6TYV RELATED DB: PDB REMARK 900 6TYV CONTAINS THE SAME PROTEIN COMPLEXED WITH WRN REMARK 900 RELATED ID: 6TYT RELATED DB: PDB REMARK 900 6TYT CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF AND XLF REMARK 900 RELATED ID: 6TYW RELATED DB: PDB REMARK 900 6TYW CONTAINS THE MUTANT PROTEIN COMPLEXED WITH APLF REMARK 900 RELATED ID: 6TYX RELATED DB: PDB REMARK 900 6TYX CONTAINS THE MUTANT PROTEIN COMPLEXED WITH XLF DBREF1 6TYZ A 1 242 UNP A0A1L8EVE5_XENLA DBREF2 6TYZ A A0A1L8EVE5 1 242 DBREF 6TYZ B 179 194 PDB 6TYZ 6TYZ 179 194 SEQADV 6TYZ MET A -6 UNP A0A1L8EVE INITIATING METHIONINE SEQADV 6TYZ HIS A -5 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ HIS A -4 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ HIS A -3 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ HIS A -2 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ HIS A -1 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ HIS A 0 UNP A0A1L8EVE EXPRESSION TAG SEQADV 6TYZ A UNP A0A1L8EVE GLU 171 DELETION SEQADV 6TYZ A UNP A0A1L8EVE GLU 172 DELETION SEQADV 6TYZ A UNP A0A1L8EVE PHE 173 DELETION SEQADV 6TYZ A UNP A0A1L8EVE GLY 174 DELETION SEQADV 6TYZ A UNP A0A1L8EVE GLY 175 DELETION SEQADV 6TYZ A UNP A0A1L8EVE SER 176 DELETION SEQADV 6TYZ A UNP A0A1L8EVE SER 177 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ASN 178 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ASN 179 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ARG 180 DELETION SEQADV 6TYZ A UNP A0A1L8EVE GLY 181 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ASN 182 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ALA 183 DELETION SEQADV 6TYZ A UNP A0A1L8EVE GLY 184 DELETION SEQADV 6TYZ A UNP A0A1L8EVE SER 185 DELETION SEQADV 6TYZ A UNP A0A1L8EVE SER 186 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ASP 187 DELETION SEQADV 6TYZ A UNP A0A1L8EVE ARG 188 DELETION SEQADV 6TYZ SER A 190 UNP A0A1L8EVE CYS 190 ENGINEERED MUTATION SEQRES 1 A 231 MET HIS HIS HIS HIS HIS HIS MET ALA ARG ALA ALA LYS SEQRES 2 A 231 SER ALA VAL VAL LEU CYS MET ASP VAL GLY LEU ALA MET SEQRES 3 A 231 SER HIS SER ASN GLN GLY LYS GLU SER PRO PHE GLU GLN SEQRES 4 A 231 ALA LYS LYS VAL MET MET LEU PHE LEU GLN ARG GLN VAL SEQRES 5 A 231 PHE ALA GLU SER LYS ASP GLU ILE ALA VAL VAL LEU TYR SEQRES 6 A 231 GLY THR ASP THR THR ASP ASN ALA LEU ALA ARG GLU ASP SEQRES 7 A 231 GLN TYR GLU ASN ILE SER VAL HIS ARG HIS LEU MET LEU SEQRES 8 A 231 PRO ASP PHE ASP LEU LEU GLU GLN ILE GLU ASN VAL VAL SEQRES 9 A 231 GLU PRO GLY SER VAL GLN ALA ASP PHE LEU ASP ALA LEU SEQRES 10 A 231 ILE VAL SER MET ASP LEU LEU GLN LYS GLU THR LEU GLY SEQRES 11 A 231 LYS LYS TYR THR ARG LEU HIS ILE ALA VAL PHE SER ASP SEQRES 12 A 231 LEU SER SER PRO PHE SER VAL ASP GLN LEU GLU VAL ILE SEQRES 13 A 231 ILE ALA ASN LEU LYS LYS ALA GLU ILE THR LEU GLN PHE SEQRES 14 A 231 PHE LEU PRO PHE SER VAL ASP GLU GLY SER GLY PRO GLY SEQRES 15 A 231 LYS GLY LEU SER ASP GLN GLN LYS GLU GLY ILE GLU MET SEQRES 16 A 231 VAL ARG LYS ILE MET PHE SER LEU ASP GLY GLU GLU GLY SEQRES 17 A 231 LEU SER GLU VAL PHE THR PHE ARG ASP SER LEU GLU ARG SEQRES 18 A 231 LEU SER ILE PHE LYS LYS ILE GLU ARG ARG SEQRES 1 B 16 LEU ALA GLU ARG LYS ARG ILE LEU PRO THR TRP MET LEU SEQRES 2 B 16 ALA GLU HIS HET EDO A 301 10 HET EDO A 302 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *172(H2 O) HELIX 1 AA1 GLY A 16 HIS A 21 5 6 HELIX 2 AA2 SER A 28 ALA A 47 1 20 HELIX 3 AA3 ASP A 86 VAL A 97 1 12 HELIX 4 AA4 ASP A 105 THR A 121 1 17 HELIX 5 AA5 GLN A 145 ALA A 156 1 12 HELIX 6 AA6 SER A 197 SER A 221 1 25 HELIX 7 AA7 PHE A 226 SER A 234 1 9 HELIX 8 AA8 PRO B 187 ALA B 192 1 6 SHEET 1 AA1 6 ILE A 76 MET A 83 0 SHEET 2 AA1 6 GLU A 52 TYR A 58 -1 N LEU A 57 O SER A 77 SHEET 3 AA1 6 ALA A 8 ASP A 14 1 N VAL A 9 O ALA A 54 SHEET 4 AA1 6 LEU A 129 PHE A 134 1 O ALA A 132 N CYS A 12 SHEET 5 AA1 6 ILE A 158 LEU A 164 1 O PHE A 163 N VAL A 133 SHEET 6 AA1 6 VAL A 223 THR A 225 1 O PHE A 224 N PHE A 162 SITE 1 AC1 9 ASN A 23 ALA A 66 ASP A 115 LEU A 116 SITE 2 AC1 9 LYS A 119 GLU A 120 GLY A 195 HOH A 456 SITE 3 AC1 9 HOH A 459 SITE 1 AC2 4 GLN A 118 LEU A 129 ALA A 156 HOH A 438 CRYST1 43.807 71.189 79.527 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012574 0.00000