HEADER STRUCTURAL PROTEIN/APOPTOSIS 12-AUG-19 6TZC TITLE CRYSTAL STRUCTURE OF AFRICAN SWINE FEVER VIRUS A179L WITH THE TITLE 2 AUTOPHAGY REGULATOR BECLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MMBP,MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN, COMPND 5 MBP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: APOPTOSIS REGULATOR BCL-2 HOMOLOG; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: BECLIN-1; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: BH3 MOTIF, RESIDUES 103-128; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS (STRAIN BADAJOZ 1971 SOURCE 10 VERO-ADAPTED); SOURCE 11 ORGANISM_COMMON: BA71V; SOURCE 12 ORGANISM_TAXID: 10498; SOURCE 13 STRAIN: BADAJOZ 1971 VERO-ADAPTED; SOURCE 14 GENE: BA71V-041, A179L; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 20 ORGANISM_COMMON: PIG; SOURCE 21 ORGANISM_TAXID: 9823 KEYWDS APOPTOSIS, AUTOPHAGY, BCL-2 VIRUS, STRUCTURAL PROTEIN, STRUCTURAL KEYWDS 2 PROTEIN-APOPTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BANJARA,M.KVANSAKUL,M.G.HINDS REVDAT 4 11-OCT-23 6TZC 1 JRNL HETSYN REVDAT 3 29-JUL-20 6TZC 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 01-JAN-20 6TZC 1 REMARK REVDAT 1 20-NOV-19 6TZC 0 JRNL AUTH S.BANJARA,G.L.SHIMMON,L.K.DIXON,C.L.NETHERTON,M.G.HINDS, JRNL AUTH 2 M.KVANSAKUL JRNL TITL CRYSTAL STRUCTURE OF AFRICAN SWINE FEVER VIRUS A179L WITH JRNL TITL 2 THE AUTOPHAGY REGULATOR BECLIN. JRNL REF VIRUSES V. 11 2019 JRNL REFN ESSN 1999-4915 JRNL PMID 31461953 JRNL DOI 10.3390/V11090789 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 24021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.5800 - 4.8200 0.98 2958 145 0.1911 0.2280 REMARK 3 2 4.8100 - 3.8200 0.99 2862 153 0.1663 0.1877 REMARK 3 3 3.8200 - 3.3400 1.00 2857 146 0.1928 0.2519 REMARK 3 4 3.3400 - 3.0300 1.00 2851 164 0.2379 0.2630 REMARK 3 5 3.0300 - 2.8200 0.99 2807 176 0.2471 0.2992 REMARK 3 6 2.8200 - 2.6500 0.99 2858 124 0.2626 0.3061 REMARK 3 7 2.6500 - 2.5200 0.99 2817 142 0.2785 0.3604 REMARK 3 8 2.5200 - 2.4100 0.98 2829 132 0.3012 0.3298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.348 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4297 REMARK 3 ANGLE : 0.590 5849 REMARK 3 CHIRALITY : 0.044 655 REMARK 3 PLANARITY : 0.003 749 REMARK 3 DIHEDRAL : 19.320 1550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4476 -6.1030 -27.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.2907 REMARK 3 T33: 0.3601 T12: 0.0070 REMARK 3 T13: -0.0123 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 3.3328 L22: 1.4270 REMARK 3 L33: 2.2880 L12: -0.7389 REMARK 3 L13: -0.6170 L23: -0.5048 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: 0.2727 S13: 0.5183 REMARK 3 S21: 0.0328 S22: 0.1321 S23: 0.0241 REMARK 3 S31: -0.3893 S32: -0.1948 S33: -0.2046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5899 -22.0837 -30.1412 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.3667 REMARK 3 T33: 0.5428 T12: 0.0578 REMARK 3 T13: 0.0599 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.8044 L22: 0.9276 REMARK 3 L33: 1.8231 L12: -0.3539 REMARK 3 L13: -0.0273 L23: 0.5846 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.1898 S13: -0.6229 REMARK 3 S21: 0.2451 S22: 0.0596 S23: -0.4393 REMARK 3 S31: 0.6748 S32: 0.3130 S33: -0.0989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3162 -3.2880 -54.7844 REMARK 3 T TENSOR REMARK 3 T11: 0.5348 T22: 0.8240 REMARK 3 T33: 0.3571 T12: -0.0232 REMARK 3 T13: 0.0114 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.1176 L22: 1.9196 REMARK 3 L33: 1.3047 L12: 0.6457 REMARK 3 L13: -0.9098 L23: -1.3464 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.7272 S13: 0.1037 REMARK 3 S21: -0.4885 S22: 0.1648 S23: 0.0600 REMARK 3 S31: 0.1428 S32: -0.1090 S33: -0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8958 -4.0047 -49.0512 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.9766 REMARK 3 T33: 0.4363 T12: 0.0945 REMARK 3 T13: 0.0766 T23: 0.1247 REMARK 3 L TENSOR REMARK 3 L11: 1.3045 L22: 2.0788 REMARK 3 L33: 0.7865 L12: 0.4630 REMARK 3 L13: -0.1073 L23: -0.0864 REMARK 3 S TENSOR REMARK 3 S11: -0.2711 S12: 0.3333 S13: -0.3769 REMARK 3 S21: 0.1388 S22: 0.0407 S23: 0.0034 REMARK 3 S31: -0.0612 S32: 0.5660 S33: 0.2015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9085 -8.9798 -44.9257 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.5301 REMARK 3 T33: 0.2964 T12: 0.0076 REMARK 3 T13: -0.0197 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.7828 L22: 1.1017 REMARK 3 L33: 1.9485 L12: 0.3767 REMARK 3 L13: -0.9012 L23: -0.8572 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.6740 S13: 0.0036 REMARK 3 S21: -0.2974 S22: 0.1334 S23: 0.1144 REMARK 3 S31: 0.0123 S32: -0.2801 S33: -0.0289 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1673 1.7031 -41.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.5038 T22: 0.7277 REMARK 3 T33: 0.5807 T12: -0.0520 REMARK 3 T13: -0.0266 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.2029 L22: 2.6658 REMARK 3 L33: 1.9811 L12: 0.4700 REMARK 3 L13: 0.3283 L23: -1.1277 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.0519 S13: 0.4065 REMARK 3 S21: 0.3742 S22: -0.0488 S23: -0.1336 REMARK 3 S31: -0.7227 S32: 0.7995 S33: -0.0360 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2013 -13.2462 -3.7517 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.2773 REMARK 3 T33: 0.3663 T12: -0.0133 REMARK 3 T13: -0.0281 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.6523 L22: 3.6001 REMARK 3 L33: 3.1174 L12: -1.0475 REMARK 3 L13: 1.0754 L23: -0.3478 REMARK 3 S TENSOR REMARK 3 S11: -0.1501 S12: -0.1359 S13: 0.5312 REMARK 3 S21: 0.0124 S22: 0.0890 S23: 0.0902 REMARK 3 S31: -0.0314 S32: 0.0958 S33: 0.1747 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9504 -20.5835 -11.2344 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.0728 REMARK 3 T33: 0.2439 T12: 0.0026 REMARK 3 T13: -0.0155 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.2717 L22: 1.4948 REMARK 3 L33: 1.7250 L12: -0.5057 REMARK 3 L13: -0.0309 L23: -0.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: 0.1669 S13: -0.1349 REMARK 3 S21: 0.0225 S22: 0.0097 S23: 0.0010 REMARK 3 S31: 0.1446 S32: 0.0026 S33: 0.0376 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 106 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6488 -30.4077 -5.8516 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.2198 REMARK 3 T33: 0.6366 T12: -0.0128 REMARK 3 T13: -0.0259 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 8.0685 L22: 3.9365 REMARK 3 L33: 5.6754 L12: -4.3548 REMARK 3 L13: -2.4458 L23: 1.5851 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: 0.0595 S13: -0.9784 REMARK 3 S21: -0.1477 S22: -0.0067 S23: -0.4213 REMARK 3 S31: 0.4319 S32: -0.0585 S33: -0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 51.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UA5 REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.17350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 LYS A 27 REMARK 465 SER A 395 REMARK 465 SER A 396 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 TYR B 147 REMARK 465 SER B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 ASP C 103 REMARK 465 GLY C 104 REMARK 465 GLY C 105 REMARK 465 GLY C 126 REMARK 465 GLN C 127 REMARK 465 THR C 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 GLN A 351 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 92 O HOH A 510 1.52 REMARK 500 HG SER B 110 O HOH B 203 1.59 REMARK 500 O ALA A 103 O HOH A 501 1.83 REMARK 500 O ILE B 56 O HOH B 201 1.86 REMARK 500 OE2 GLU A 104 O HOH A 502 1.93 REMARK 500 NH1 ARG C 113 O HOH C 201 1.94 REMARK 500 O HOH A 533 O HOH A 552 1.96 REMARK 500 O HOH B 219 O HOH B 247 1.98 REMARK 500 O HOH A 536 O HOH A 550 1.99 REMARK 500 OE2 GLU A 336 O HOH A 503 1.99 REMARK 500 O HOH A 568 O HOH A 575 2.00 REMARK 500 OD2 ASP A 91 O2 GLC D 1 2.00 REMARK 500 OE2 GLU A 137 O6 GLC D 2 2.03 REMARK 500 O HOH B 219 O HOH B 246 2.03 REMARK 500 O HOH A 539 O HOH A 574 2.08 REMARK 500 O VAL A 61 O HOH A 504 2.08 REMARK 500 O HOH A 529 O HOH A 567 2.11 REMARK 500 O HOH B 239 O HOH B 248 2.11 REMARK 500 OE2 GLU B 48 O HOH B 202 2.12 REMARK 500 OE2 GLU A 64 O HOH A 505 2.12 REMARK 500 SD MET B 128 O HOH B 249 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 -161.07 -108.67 REMARK 500 ALA A 194 -72.22 -90.55 REMARK 500 GLU A 198 -82.67 -120.20 REMARK 500 ASP A 235 -162.69 -119.79 REMARK 500 LYS A 282 79.15 -113.70 REMARK 500 LEU A 311 48.89 -83.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 6TZC A 27 392 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 6TZC B 1 148 UNP P42485 ARBH_ASFB7 1 148 DBREF 6TZC C 103 128 UNP Q4A1L5 BECN1_PIG 103 128 SEQADV 6TZC GLY A 26 UNP P0AEX9 EXPRESSION TAG SEQADV 6TZC ASN A 393 UNP P0AEX9 EXPRESSION TAG SEQADV 6TZC SER A 394 UNP P0AEX9 EXPRESSION TAG SEQADV 6TZC SER A 395 UNP P0AEX9 EXPRESSION TAG SEQADV 6TZC SER A 396 UNP P0AEX9 EXPRESSION TAG SEQADV 6TZC HIS B 149 UNP P42485 EXPRESSION TAG SEQADV 6TZC HIS B 150 UNP P42485 EXPRESSION TAG SEQADV 6TZC HIS B 151 UNP P42485 EXPRESSION TAG SEQADV 6TZC HIS B 152 UNP P42485 EXPRESSION TAG SEQADV 6TZC HIS B 153 UNP P42485 EXPRESSION TAG SEQADV 6TZC HIS B 154 UNP P42485 EXPRESSION TAG SEQRES 1 A 371 GLY LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 371 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 371 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 371 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 371 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 371 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 371 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 371 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 371 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 371 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 371 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 371 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 371 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 371 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 371 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 371 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 371 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 371 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 371 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 371 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 371 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 371 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 371 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 371 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 371 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 371 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 371 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 371 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP SEQRES 29 A 371 ALA GLN THR ASN SER SER SER SEQRES 1 B 154 MET GLU GLY GLU GLU LEU ILE TYR HIS ASN ILE ILE ASN SEQRES 2 B 154 GLU ILE LEU VAL GLY TYR ILE LYS TYR TYR ILE ASN ASP SEQRES 3 B 154 ILE SER GLU HIS GLU LEU SER PRO TYR GLN GLN GLN ILE SEQRES 4 B 154 LYS LYS ILE LEU THR TYR TYR ASP GLU CYS LEU ASN LYS SEQRES 5 B 154 GLN VAL THR ILE THR PHE SER LEU THR SER VAL GLN GLU SEQRES 6 B 154 ILE LYS THR GLN PHE THR GLY VAL VAL THR GLU LEU PHE SEQRES 7 B 154 LYS ASP LEU ILE ASN TRP GLY ARG ILE CYS GLY PHE ILE SEQRES 8 B 154 VAL PHE SER ALA LYS MET ALA LYS TYR CYS LYS ASP ALA SEQRES 9 B 154 ASN ASN HIS LEU GLU SER THR VAL ILE THR THR ALA TYR SEQRES 10 B 154 ASN PHE MET LYS HIS ASN LEU LEU PRO TRP MET ILE SER SEQRES 11 B 154 HIS GLY GLY GLN GLU GLU PHE LEU ALA PHE SER LEU HIS SEQRES 12 B 154 SER ASP MET TYR SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 26 ASP GLY GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 C 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR HET GLC D 1 23 HET GLC D 2 22 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 4 GLC 2(C6 H12 O6) FORMUL 5 HOH *126(H2 O) HELIX 1 AA1 GLY A 42 GLY A 58 1 17 HELIX 2 AA2 LYS A 68 THR A 79 1 12 HELIX 3 AA3 ARG A 92 SER A 99 1 8 HELIX 4 AA4 ASP A 108 ASP A 113 1 6 HELIX 5 AA5 TYR A 116 VAL A 123 1 8 HELIX 6 AA6 THR A 154 GLU A 156 5 3 HELIX 7 AA7 GLU A 157 GLY A 169 1 13 HELIX 8 AA8 GLU A 179 PHE A 182 5 4 HELIX 9 AA9 THR A 183 ASP A 190 1 8 HELIX 10 AB1 ASN A 211 ASN A 227 1 17 HELIX 11 AB2 ASP A 235 LYS A 245 1 11 HELIX 12 AB3 GLY A 254 TRP A 256 5 3 HELIX 13 AB4 ALA A 257 LYS A 265 1 9 HELIX 14 AB5 ASN A 298 TYR A 309 1 12 HELIX 15 AB6 THR A 312 LYS A 323 1 12 HELIX 16 AB7 LEU A 330 ALA A 338 1 9 HELIX 17 AB8 ASP A 340 LYS A 352 1 13 HELIX 18 AB9 GLN A 361 SER A 378 1 18 HELIX 19 AC1 THR A 382 SER A 394 1 13 HELIX 20 AC2 GLU B 4 LEU B 16 1 13 HELIX 21 AC3 LEU B 16 ILE B 24 1 9 HELIX 22 AC4 SER B 28 LEU B 32 5 5 HELIX 23 AC5 SER B 33 VAL B 54 1 22 HELIX 24 AC6 SER B 62 ASP B 80 1 19 HELIX 25 AC7 ASN B 83 ASN B 105 1 23 HELIX 26 AC8 LEU B 108 LEU B 124 1 17 HELIX 27 AC9 LEU B 124 HIS B 131 1 8 HELIX 28 AD1 GLY B 132 ASP B 145 1 14 HELIX 29 AD2 MET C 107 MET C 124 1 18 SHEET 1 AA1 6 LYS A 60 GLU A 64 0 SHEET 2 AA1 6 LYS A 32 TRP A 36 1 N ILE A 35 O GLU A 64 SHEET 3 AA1 6 ILE A 85 ALA A 89 1 O ILE A 85 N TRP A 36 SHEET 4 AA1 6 PHE A 284 ASN A 293 -1 O GLY A 291 N ILE A 86 SHEET 5 AA1 6 TYR A 132 GLU A 137 -1 N GLU A 137 O GLY A 286 SHEET 6 AA1 6 ALA A 327 VAL A 328 -1 O ALA A 327 N VAL A 136 SHEET 1 AA2 3 LEU A 102 ALA A 103 0 SHEET 2 AA2 3 PHE A 284 ASN A 293 -1 O ILE A 292 N ALA A 103 SHEET 3 AA2 3 GLU A 354 ILE A 355 1 O GLU A 354 N VAL A 285 SHEET 1 AA3 2 ARG A 124 TYR A 125 0 SHEET 2 AA3 2 LYS A 128 LEU A 129 -1 O LYS A 128 N TYR A 125 SHEET 1 AA4 4 SER A 171 LEU A 173 0 SHEET 2 AA4 4 THR A 248 ASN A 253 1 O ALA A 249 N SER A 171 SHEET 3 AA4 4 SER A 140 ASN A 144 -1 N ILE A 142 O THR A 251 SHEET 4 AA4 4 TYR A 268 THR A 271 -1 O THR A 271 N LEU A 141 SHEET 1 AA5 2 TYR A 193 TYR A 197 0 SHEET 2 AA5 2 TYR A 202 GLY A 208 -1 O ASP A 203 N LYS A 196 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.42 CRYST1 54.565 44.347 129.022 90.00 94.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018327 0.000000 0.001453 0.00000 SCALE2 0.000000 0.022549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007775 0.00000