HEADER LYASE 12-AUG-19 6TZP TITLE W96F OXALATE DECARBOXYLASE (B. SUBTILIS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXALATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CUPIN DOMAIN-CONTAINING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_3145, ETL41_08750; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXALATE DECARBOXYLASE, ELECTRON TRANSFER, BACILLUS SUBTILIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.PASTORE,M.J.BURG,U.T.TWAHIR,S.D.BRUNER,A.ANGERHOFER REVDAT 4 11-OCT-23 6TZP 1 REMARK REVDAT 3 14-JUL-21 6TZP 1 JRNL REVDAT 2 30-JUN-21 6TZP 1 JRNL REVDAT 1 17-FEB-21 6TZP 0 JRNL AUTH A.J.PASTORE,R.D.TEO,A.MONTOYA,M.J.BURG,U.T.TWAHIR, JRNL AUTH 2 S.D.BRUNER,D.N.BERATAN,A.ANGERHOFER JRNL TITL OXALATE DECARBOXYLASE USES ELECTRON HOLE HOPPING FOR JRNL TITL 2 CATALYSIS. JRNL REF J.BIOL.CHEM. V. 297 00857 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34097877 JRNL DOI 10.1016/J.JBC.2021.100857 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SUN,C.M.AZUMAYA,E.TSE,D.P.BULKLEY,M.B.HARRINGTON, REMARK 1 AUTH 2 G.GILBERT,A.FROST,D.SOUTHWORTH,K.A.VERBA,Y.CHENG,D.A.AGARD REMARK 1 TITL PRACTICAL CONSIDERATIONS FOR USING K3 CAMERAS IN CDS MODE REMARK 1 TITL 2 FOR HIGH-RESOLUTION AND HIGH-THROUGHPUT SINGLE PARTICLE REMARK 1 TITL 3 CRYO-EM. REMARK 1 REF J.STRUCT.BIOL. V. 213 07745 2021 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 33984504 REMARK 1 DOI 10.1016/J.JSB.2021.107745 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 60461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8650 - 4.7284 1.00 2863 143 0.1606 0.1787 REMARK 3 2 4.7284 - 3.7550 1.00 2800 133 0.1327 0.1318 REMARK 3 3 3.7550 - 3.2809 1.00 2745 151 0.1512 0.1628 REMARK 3 4 3.2809 - 2.9812 1.00 2748 150 0.1578 0.1767 REMARK 3 5 2.9812 - 2.7676 1.00 2755 151 0.1669 0.1784 REMARK 3 6 2.7676 - 2.6045 1.00 2739 144 0.1679 0.2052 REMARK 3 7 2.6045 - 2.4741 1.00 2732 146 0.1666 0.1873 REMARK 3 8 2.4741 - 2.3665 1.00 2741 151 0.1601 0.1811 REMARK 3 9 2.3665 - 2.2754 1.00 2710 150 0.1587 0.1819 REMARK 3 10 2.2754 - 2.1969 1.00 2730 143 0.1461 0.1733 REMARK 3 11 2.1969 - 2.1282 1.00 2704 152 0.1480 0.1817 REMARK 3 12 2.1282 - 2.0674 1.00 2771 128 0.1510 0.1648 REMARK 3 13 2.0674 - 2.0130 1.00 2701 155 0.1496 0.1807 REMARK 3 14 2.0130 - 1.9639 1.00 2716 148 0.1621 0.2167 REMARK 3 15 1.9639 - 1.9192 1.00 2737 135 0.1717 0.1804 REMARK 3 16 1.9192 - 1.8784 1.00 2730 145 0.1694 0.2046 REMARK 3 17 1.8784 - 1.8408 1.00 2700 142 0.1692 0.2033 REMARK 3 18 1.8408 - 1.8061 1.00 2748 134 0.1795 0.2191 REMARK 3 19 1.8061 - 1.7738 1.00 2744 138 0.2008 0.2355 REMARK 3 20 1.7738 - 1.7438 1.00 2702 137 0.2338 0.2553 REMARK 3 21 1.7438 - 1.7200 0.97 2646 123 0.2826 0.3050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.9327 3.1967 16.6832 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0912 REMARK 3 T33: 0.0850 T12: -0.0044 REMARK 3 T13: -0.0094 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0798 L22: 0.0737 REMARK 3 L33: 0.0584 L12: 0.0298 REMARK 3 L13: 0.0324 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0255 S13: 0.0041 REMARK 3 S21: 0.0154 S22: 0.0073 S23: -0.0298 REMARK 3 S31: 0.0067 S32: 0.0182 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.716 REMARK 200 RESOLUTION RANGE LOW (A) : 36.247 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12210 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 1.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5VG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS, 80 MM SODIUM CHLORIDE, 10 REMARK 280 MM ARGININE, 10 MM GLUTAMATE, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 77.53650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.76572 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.02633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 77.53650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.76572 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.02633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 77.53650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.76572 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.02633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 77.53650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.76572 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.02633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 77.53650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.76572 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.02633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 77.53650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.76572 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.02633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.53144 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 82.05267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 89.53144 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 82.05267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 89.53144 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 82.05267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 89.53144 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.05267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 89.53144 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 82.05267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 89.53144 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 82.05267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -347.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 CYS A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LYS A 380 CD CE NZ REMARK 470 LYS A 382 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 94 123.96 -39.24 REMARK 500 LEU A 145 -155.28 -93.49 REMARK 500 ASP A 156 40.90 -88.08 REMARK 500 SER A 164 84.78 -166.64 REMARK 500 TYR A 200 -69.90 73.20 REMARK 500 SER A 296 165.45 80.43 REMARK 500 PHE A 315 115.89 -30.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 NE2 REMARK 620 2 HIS A 97 NE2 101.8 REMARK 620 3 GLU A 101 OE1 171.9 86.0 REMARK 620 4 HIS A 140 NE2 85.1 92.1 92.4 REMARK 620 5 HOH A 566 O 88.5 169.2 83.9 92.1 REMARK 620 6 HOH A 588 O 87.5 84.9 95.5 171.4 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 273 NE2 REMARK 620 2 HIS A 275 NE2 93.7 REMARK 620 3 GLU A 280 OE1 173.4 80.0 REMARK 620 4 HIS A 319 NE2 84.7 107.3 95.5 REMARK 620 5 HOH A 531 O 95.6 151.7 90.8 100.2 REMARK 620 N 1 2 3 4 DBREF1 6TZP A 1 385 UNP A0A162QMS4_BACIU DBREF2 6TZP A A0A162QMS4 1 385 SEQADV 6TZP PHE A 96 UNP A0A162QMS TRP 96 ENGINEERED MUTATION SEQRES 1 A 385 MET LYS LYS GLN ASN ASP ILE PRO GLN PRO ILE ARG GLY SEQRES 2 A 385 ASP LYS GLY ALA THR VAL LYS ILE PRO ARG ASN ILE GLU SEQRES 3 A 385 ARG ASP ARG GLN ASN PRO ASP MET LEU VAL PRO PRO GLU SEQRES 4 A 385 THR ASP HIS GLY THR VAL SER ASN MET LYS PHE SER PHE SEQRES 5 A 385 SER ASP THR HIS ASN ARG LEU GLU LYS GLY GLY TYR ALA SEQRES 6 A 385 ARG GLU VAL THR VAL ARG GLU LEU PRO ILE SER GLU ASN SEQRES 7 A 385 LEU ALA SER VAL ASN MET ARG LEU LYS PRO GLY ALA ILE SEQRES 8 A 385 ARG GLU LEU HIS PHE HIS LYS GLU ALA GLU TRP ALA TYR SEQRES 9 A 385 MET ILE TYR GLY SER ALA ARG VAL THR ILE VAL ASP GLU SEQRES 10 A 385 LYS GLY ARG SER PHE ILE ASP ASP VAL GLY GLU GLY ASP SEQRES 11 A 385 LEU TRP TYR PHE PRO SER GLY LEU PRO HIS SER ILE GLN SEQRES 12 A 385 ALA LEU GLU GLU GLY ALA GLU PHE LEU LEU VAL PHE ASP SEQRES 13 A 385 ASP GLY SER PHE SER GLU ASN SER THR PHE GLN LEU THR SEQRES 14 A 385 ASP TRP LEU ALA HIS THR PRO LYS GLU VAL ILE ALA ALA SEQRES 15 A 385 ASN PHE GLY VAL THR LYS GLU GLU ILE SER ASN LEU PRO SEQRES 16 A 385 GLY LYS GLU LYS TYR ILE PHE GLU ASN GLN LEU PRO GLY SEQRES 17 A 385 SER LEU LYS ASP ASP ILE VAL GLU GLY PRO ASN GLY GLU SEQRES 18 A 385 VAL PRO TYR PRO PHE THR TYR ARG LEU LEU GLU GLN GLU SEQRES 19 A 385 PRO ILE GLU SER GLU GLY GLY LYS VAL TYR ILE ALA ASP SEQRES 20 A 385 SER THR ASN PHE LYS VAL SER LYS THR ILE ALA SER ALA SEQRES 21 A 385 LEU VAL THR VAL GLU PRO GLY ALA MET ARG GLU LEU HIS SEQRES 22 A 385 TRP HIS PRO ASN THR HIS GLU TRP GLN TYR TYR ILE SER SEQRES 23 A 385 GLY LYS ALA ARG MET THR VAL PHE ALA SER ASP GLY HIS SEQRES 24 A 385 ALA ARG THR PHE ASN TYR GLN ALA GLY ASP VAL GLY TYR SEQRES 25 A 385 VAL PRO PHE ALA MET GLY HIS TYR VAL GLU ASN ILE GLY SEQRES 26 A 385 ASP GLU PRO LEU VAL PHE LEU GLU ILE PHE LYS ASP ASP SEQRES 27 A 385 HIS TYR ALA ASP VAL SER LEU ASN GLN TRP LEU ALA MET SEQRES 28 A 385 LEU PRO GLU THR PHE VAL GLN ALA HIS LEU ASP LEU GLY SEQRES 29 A 385 LYS ASP PHE THR ASP VAL LEU SER LYS GLU LYS HIS PRO SEQRES 30 A 385 VAL VAL LYS LYS LYS CYS SER LYS HET MN A 401 1 HET MN A 402 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 2(MN 2+) FORMUL 4 HOH *253(H2 O) HELIX 1 AA1 ASN A 24 ASN A 31 1 8 HELIX 2 AA2 ASN A 31 VAL A 36 1 6 HELIX 3 AA3 SER A 53 THR A 55 5 3 HELIX 4 AA4 SER A 161 THR A 165 5 5 HELIX 5 AA5 LEU A 168 HIS A 174 1 7 HELIX 6 AA6 PRO A 176 GLY A 185 1 10 HELIX 7 AA7 LYS A 188 SER A 192 5 5 HELIX 8 AA8 SER A 209 ILE A 214 1 6 HELIX 9 AA9 LEU A 231 GLN A 233 5 3 HELIX 10 AB1 LEU A 345 MET A 351 1 7 HELIX 11 AB2 PRO A 353 ASP A 362 1 10 HELIX 12 AB3 GLY A 364 ASP A 369 1 6 SHEET 1 AA1 2 ILE A 11 ARG A 12 0 SHEET 2 AA1 2 LYS A 15 GLY A 16 -1 O LYS A 15 N ARG A 12 SHEET 1 AA2 7 LYS A 49 SER A 51 0 SHEET 2 AA2 7 ASP A 309 VAL A 313 -1 O VAL A 310 N PHE A 50 SHEET 3 AA2 7 GLU A 280 SER A 286 -1 N GLU A 280 O VAL A 313 SHEET 4 AA2 7 LEU A 329 PHE A 335 -1 O ILE A 334 N TRP A 281 SHEET 5 AA2 7 ALA A 258 VAL A 264 -1 N VAL A 262 O PHE A 331 SHEET 6 AA2 7 GLY A 241 ALA A 246 -1 N TYR A 244 O LEU A 261 SHEET 7 AA2 7 ILE A 236 SER A 238 -1 N ILE A 236 O VAL A 243 SHEET 1 AA3 7 ARG A 58 GLU A 60 0 SHEET 2 AA3 7 GLY A 63 VAL A 68 -1 O ALA A 65 N ARG A 58 SHEET 3 AA3 7 ALA A 80 LEU A 86 -1 O ASN A 83 N ARG A 66 SHEET 4 AA3 7 HIS A 140 PHE A 155 -1 O LEU A 153 N VAL A 82 SHEET 5 AA3 7 GLU A 101 VAL A 115 -1 N ARG A 111 O GLN A 143 SHEET 6 AA3 7 ASP A 130 PHE A 134 -1 O PHE A 134 N GLU A 101 SHEET 7 AA3 7 THR A 227 ARG A 229 -1 O TYR A 228 N LEU A 131 SHEET 1 AA4 4 THR A 227 ARG A 229 0 SHEET 2 AA4 4 ASP A 130 PHE A 134 -1 N LEU A 131 O TYR A 228 SHEET 3 AA4 4 GLU A 101 VAL A 115 -1 N GLU A 101 O PHE A 134 SHEET 4 AA4 4 SER A 121 VAL A 126 -1 O VAL A 126 N ALA A 110 SHEET 1 AA5 5 SER A 121 VAL A 126 0 SHEET 2 AA5 5 GLU A 101 VAL A 115 -1 N ALA A 110 O VAL A 126 SHEET 3 AA5 5 HIS A 140 PHE A 155 -1 O GLN A 143 N ARG A 111 SHEET 4 AA5 5 ILE A 91 PHE A 96 -1 N ARG A 92 O ILE A 142 SHEET 5 AA5 5 ILE A 201 PHE A 202 -1 O PHE A 202 N ILE A 91 SHEET 1 AA6 3 ILE A 201 PHE A 202 0 SHEET 2 AA6 3 ILE A 91 PHE A 96 -1 N ILE A 91 O PHE A 202 SHEET 3 AA6 3 PHE A 166 GLN A 167 -1 O PHE A 166 N PHE A 96 SHEET 1 AA7 6 PHE A 166 GLN A 167 0 SHEET 2 AA7 6 ILE A 91 PHE A 96 -1 N PHE A 96 O PHE A 166 SHEET 3 AA7 6 HIS A 140 PHE A 155 -1 O ILE A 142 N ARG A 92 SHEET 4 AA7 6 ALA A 80 LEU A 86 -1 N VAL A 82 O LEU A 153 SHEET 5 AA7 6 GLY A 63 VAL A 68 -1 N ARG A 66 O ASN A 83 SHEET 6 AA7 6 ARG A 58 GLU A 60 -1 N ARG A 58 O ALA A 65 SHEET 1 AA8 5 HIS A 299 GLN A 306 0 SHEET 2 AA8 5 LYS A 288 SER A 296 -1 N ALA A 289 O TYR A 305 SHEET 3 AA8 5 HIS A 319 ASN A 323 -1 O GLU A 322 N ARG A 290 SHEET 4 AA8 5 ALA A 268 TRP A 274 -1 N ARG A 270 O VAL A 321 SHEET 5 AA8 5 VAL A 343 SER A 344 -1 O VAL A 343 N TRP A 274 SHEET 1 AA9 5 HIS A 299 GLN A 306 0 SHEET 2 AA9 5 LYS A 288 SER A 296 -1 N ALA A 289 O TYR A 305 SHEET 3 AA9 5 HIS A 319 ASN A 323 -1 O GLU A 322 N ARG A 290 SHEET 4 AA9 5 ALA A 268 TRP A 274 -1 N ARG A 270 O VAL A 321 SHEET 5 AA9 5 VAL A 378 LYS A 380 -1 O VAL A 379 N MET A 269 LINK NE2 HIS A 95 MN MN A 401 1555 1555 2.23 LINK NE2 HIS A 97 MN MN A 401 1555 1555 2.37 LINK OE1 GLU A 101 MN MN A 401 1555 1555 2.15 LINK NE2 HIS A 140 MN MN A 401 1555 1555 2.25 LINK NE2 HIS A 273 MN MN A 402 1555 1555 2.22 LINK NE2 HIS A 275 MN MN A 402 1555 1555 2.17 LINK OE1 GLU A 280 MN MN A 402 1555 1555 2.03 LINK NE2 HIS A 319 MN MN A 402 1555 1555 2.22 LINK MN MN A 401 O HOH A 566 1555 1555 2.29 LINK MN MN A 401 O HOH A 588 1555 1555 2.33 LINK MN MN A 402 O HOH A 531 1555 1555 2.18 CRYST1 155.073 155.073 123.079 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006449 0.003723 0.000000 0.00000 SCALE2 0.000000 0.007446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008125 0.00000