HEADER TRANSFERASE 13-AUG-19 6TZX TITLE CRYSTAL STRUCTURE OF FUNGAL RNA KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: LIG1, RLG1, TRL1, CAALFM_C702060WA, CAJ7.0238, CAO19.13864, SOURCE 8 CAO19.6511; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA LIGASE, RNA REPAIR, POLYNUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 5 11-OCT-23 6TZX 1 REMARK REVDAT 4 01-JAN-20 6TZX 1 REMARK REVDAT 3 25-DEC-19 6TZX 1 JRNL REVDAT 2 27-NOV-19 6TZX 1 JRNL REVDAT 1 06-NOV-19 6TZX 0 JRNL AUTH A.BANERJEE,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL ATOMIC STRUCTURES OF THE RNA END-HEALING 5'-OH KINASE AND JRNL TITL 2 2',3'-CYCLIC PHOSPHODIESTERASE DOMAINS OF FUNGAL TRNA JRNL TITL 3 LIGASE: CONFORMATIONAL SWITCHES IN THE KINASE UPON BINDING JRNL TITL 4 OF THE GTP PHOSPHATE DONOR. JRNL REF NUCLEIC ACIDS RES. V. 47 11826 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31722405 JRNL DOI 10.1093/NAR/GKZ1049 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 36010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.570 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4100 - 3.6842 0.98 2615 155 0.1559 0.1902 REMARK 3 2 3.6842 - 2.9244 1.00 2529 149 0.1605 0.2080 REMARK 3 3 2.9244 - 2.5548 0.99 2496 147 0.1762 0.2164 REMARK 3 4 2.5548 - 2.3212 1.00 2492 143 0.1767 0.1899 REMARK 3 5 2.3212 - 2.1549 1.00 2488 145 0.1724 0.2215 REMARK 3 6 2.1549 - 2.0278 0.99 2452 147 0.1741 0.2034 REMARK 3 7 2.0278 - 1.9262 1.00 2477 147 0.1781 0.1717 REMARK 3 8 1.9262 - 1.8424 1.00 2462 138 0.1781 0.2392 REMARK 3 9 1.8424 - 1.7715 0.99 2428 140 0.1949 0.2313 REMARK 3 10 1.7715 - 1.7103 0.99 2446 147 0.1985 0.2251 REMARK 3 11 1.7103 - 1.6569 0.99 2427 143 0.2048 0.2281 REMARK 3 12 1.6569 - 1.6095 0.99 2414 144 0.2080 0.2499 REMARK 3 13 1.6095 - 1.5671 0.96 2353 144 0.2263 0.2627 REMARK 3 14 1.5671 - 1.5290 0.79 1926 116 0.2411 0.2413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1834 -2.7354 -8.9995 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1121 REMARK 3 T33: 0.1151 T12: 0.0018 REMARK 3 T13: -0.0038 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2082 L22: 0.7231 REMARK 3 L33: 0.5798 L12: 0.2895 REMARK 3 L13: -0.1039 L23: -0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.0554 S13: -0.0433 REMARK 3 S21: -0.0821 S22: 0.0219 S23: 0.0016 REMARK 3 S31: 0.0066 S32: -0.0004 S33: -0.0611 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8292 -12.5396 -7.3423 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1164 REMARK 3 T33: 0.1114 T12: -0.0068 REMARK 3 T13: 0.0061 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.3833 L22: 2.1907 REMARK 3 L33: 1.7801 L12: -0.2624 REMARK 3 L13: -0.3676 L23: 0.9475 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: 0.1549 S13: -0.2141 REMARK 3 S21: 0.0163 S22: 0.0558 S23: 0.1340 REMARK 3 S31: 0.1681 S32: -0.0878 S33: 0.0696 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7330 -13.9443 3.8365 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.1978 REMARK 3 T33: 0.1279 T12: -0.0107 REMARK 3 T13: -0.0029 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 7.1106 L22: 5.6783 REMARK 3 L33: 4.2686 L12: -4.8115 REMARK 3 L13: -2.9359 L23: 2.5029 REMARK 3 S TENSOR REMARK 3 S11: -0.3127 S12: -0.4556 S13: -0.3941 REMARK 3 S21: 0.5297 S22: 0.1893 S23: 0.2252 REMARK 3 S31: 0.3803 S32: 0.3594 S33: 0.0884 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2425 -3.4046 0.3382 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1845 REMARK 3 T33: 0.1116 T12: -0.0025 REMARK 3 T13: -0.0079 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 5.5688 L22: 6.8174 REMARK 3 L33: 0.9270 L12: -5.1414 REMARK 3 L13: -0.6834 L23: 1.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.2628 S12: -0.2386 S13: 0.2786 REMARK 3 S21: 0.5873 S22: 0.2424 S23: -0.2647 REMARK 3 S31: 0.0771 S32: 0.0798 S33: -0.0260 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 532 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5583 9.8634 -2.2597 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.2252 REMARK 3 T33: 0.3040 T12: 0.0777 REMARK 3 T13: 0.0482 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.6362 L22: 4.8237 REMARK 3 L33: 5.5846 L12: 1.3055 REMARK 3 L13: 0.5455 L23: 3.3942 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.2144 S13: 0.4416 REMARK 3 S21: 0.0026 S22: 0.0762 S23: 0.6075 REMARK 3 S31: -0.5142 S32: -0.6459 S33: 0.1061 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 533 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0090 -2.2122 -9.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.4491 T22: 0.6414 REMARK 3 T33: 0.4870 T12: -0.0430 REMARK 3 T13: 0.0111 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.4336 L22: 3.8935 REMARK 3 L33: 7.9302 L12: 3.6037 REMARK 3 L13: -0.7048 L23: -1.5724 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: 0.7118 S13: 0.0395 REMARK 3 S21: -0.6176 S22: -0.1309 S23: 0.7699 REMARK 3 S31: 0.4239 S32: -1.1700 S33: 0.1328 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 545 THROUGH 558 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0053 0.0702 1.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.2803 REMARK 3 T33: 0.2786 T12: -0.0190 REMARK 3 T13: 0.0648 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 6.6490 L22: 6.0969 REMARK 3 L33: 7.3004 L12: 0.2877 REMARK 3 L13: 1.6343 L23: 1.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.2492 S13: 0.3622 REMARK 3 S21: -0.1236 S22: 0.2502 S23: 0.8228 REMARK 3 S31: -0.0168 S32: -1.3249 S33: -0.0670 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 559 THROUGH 577 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6607 -0.6673 8.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2339 REMARK 3 T33: 0.1269 T12: -0.0356 REMARK 3 T13: -0.0292 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.8350 L22: 2.0160 REMARK 3 L33: 1.1309 L12: -0.7268 REMARK 3 L13: 1.0639 L23: 0.2866 REMARK 3 S TENSOR REMARK 3 S11: 0.1859 S12: -0.6133 S13: -0.1704 REMARK 3 S21: 0.5777 S22: -0.0934 S23: -0.0253 REMARK 3 S31: -0.0756 S32: 0.0557 S33: -0.0926 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 578 THROUGH 588 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1001 16.4542 -6.5159 REMARK 3 T TENSOR REMARK 3 T11: 0.3547 T22: 0.1379 REMARK 3 T33: 0.2805 T12: 0.0435 REMARK 3 T13: 0.0563 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 3.2778 L22: 6.3102 REMARK 3 L33: 4.6433 L12: 1.0444 REMARK 3 L13: 0.7936 L23: -2.0961 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.2932 S13: 1.0125 REMARK 3 S21: -0.3380 S22: 0.1868 S23: 0.2214 REMARK 3 S31: -0.9728 S32: -0.1531 S33: -0.0341 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 589 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8801 9.5131 -7.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1171 REMARK 3 T33: 0.1430 T12: -0.0441 REMARK 3 T13: 0.0074 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 7.5774 L22: 3.3323 REMARK 3 L33: 3.8736 L12: -1.0560 REMARK 3 L13: 2.8536 L23: -0.4650 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: -0.0351 S13: 0.1874 REMARK 3 S21: 0.0752 S22: 0.2179 S23: -0.3015 REMARK 3 S31: -0.3122 S32: 0.1856 S33: 0.0131 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 630 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1617 6.4535 -16.2844 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.1199 REMARK 3 T33: 0.1351 T12: -0.0151 REMARK 3 T13: 0.0004 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.2714 L22: 4.2033 REMARK 3 L33: 5.5954 L12: -1.6809 REMARK 3 L13: 1.6430 L23: -2.2708 REMARK 3 S TENSOR REMARK 3 S11: 0.1920 S12: 0.3413 S13: -0.0906 REMARK 3 S21: -0.1929 S22: -0.1120 S23: -0.0486 REMARK 3 S31: 0.1278 S32: 0.1797 S33: 0.0016 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.529 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5U32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M NAH2PO4, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.16050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.17250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.16050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.17250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 401 REMARK 465 ASN A 402 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 LEU A 407 REMARK 465 THR A 631 REMARK 465 PHE A 632 REMARK 465 VAL A 633 REMARK 465 LYS A 634 REMARK 465 ASN A 635 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 449 O HOH A 801 1.71 REMARK 500 O HOH A 851 O HOH A 1037 2.09 REMARK 500 O HOH A 995 O HOH A 1030 2.11 REMARK 500 O HOH A 1007 O HOH A 1057 2.16 REMARK 500 O4 PO4 A 702 O HOH A 802 2.16 REMARK 500 OD2 ASP A 515 O HOH A 803 2.17 REMARK 500 O HOH A 1027 O HOH A 1055 2.18 REMARK 500 O HOH A 1018 O HOH A 1048 2.19 REMARK 500 OE2 GLU A 514 O HOH A 804 2.19 REMARK 500 O HOH A 1027 O HOH A 1044 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 483 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 585 -136.49 57.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1059 DISTANCE = 6.65 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IDP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 702 DBREF 6TZX A 401 635 UNP P43075 TRNL_CANAL 401 635 SEQADV 6TZX ASN A 445 UNP P43075 ASP 445 ENGINEERED MUTATION SEQADV 6TZX LEU A 543 UNP P43075 SER 543 CONFLICT SEQADV 6TZX LEU A 587 UNP P43075 SER 587 CONFLICT SEQRES 1 A 235 ALA ASN GLY ASN GLU GLY LEU SER THR THR THR LYS TYR SEQRES 2 A 235 ILE PHE VAL PRO ILE ALA THR ILE GLY CYS GLY LYS THR SEQRES 3 A 235 THR VAL PHE ASN THR LEU ASN ASN LEU PHE PRO GLN TRP SEQRES 4 A 235 THR HIS ILE GLN ASN ASN ASN ILE SER LYS LYS ALA LYS SEQRES 5 A 235 LEU LYS ILE CYS ASP LEU THR LEU LEU ALA LEU GLU ASP SEQRES 6 A 235 ASP ASP GLN SER VAL VAL LEU PHE ASP ARG ASN ASN SER SEQRES 7 A 235 ALA SER ARG GLU ARG ARG GLN ILE PHE THR THR ILE ASP SEQRES 8 A 235 GLN LYS ARG ASP GLU HIS LEU ASP ASP THR VAL ASP LEU SEQRES 9 A 235 LYS TYR ILE ALA ILE ASN PHE ILE PRO GLU ASP LEU SER SEQRES 10 A 235 GLU GLU GLU LEU TRP ASP ILE THR TYR ASN ARG VAL ILE SEQRES 11 A 235 GLN ARG GLY ASP ASN HIS GLN SER ILE LYS SER GLN LEU SEQRES 12 A 235 ASP GLU ASN LEU VAL GLU SER VAL MET LYS GLY PHE ILE SEQRES 13 A 235 GLN ARG TYR GLN PRO ILE ASN THR SER ARG SER PRO ASP SEQRES 14 A 235 ASP GLN PHE ASP HIS VAL ILE HIS LEU LYS LEU SER LYS SEQRES 15 A 235 ASP GLU ASN SER LEU LYS SER SER LEU GLU ASN VAL ARG SEQRES 16 A 235 ILE ILE ILE ASP ASP LEU VAL GLN ASN PHE PRO ASP LEU SEQRES 17 A 235 ILE LYS GLU LYS PRO ALA ASP GLU LEU ILE ASN GLU CYS SEQRES 18 A 235 PHE GLN LYS ALA LEU ASP TYR LYS PRO THR PHE VAL LYS SEQRES 19 A 235 ASN HET IDP A 701 27 HET PO4 A 702 5 HETNAM IDP INOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 IDP C10 H14 N4 O11 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *259(H2 O) HELIX 1 AA1 GLY A 424 PHE A 436 1 13 HELIX 2 AA2 ASN A 445 ILE A 447 5 3 HELIX 3 AA3 LYS A 454 ASP A 465 1 12 HELIX 4 AA4 ALA A 479 ARG A 494 1 16 HELIX 5 AA5 ASP A 495 HIS A 497 5 3 HELIX 6 AA6 SER A 517 GLY A 533 1 17 HELIX 7 AA7 HIS A 536 LYS A 540 5 5 HELIX 8 AA8 ASP A 544 TYR A 559 1 16 HELIX 9 AA9 PRO A 568 PHE A 572 5 5 HELIX 10 AB1 LYS A 588 PHE A 605 1 18 HELIX 11 AB2 ALA A 614 TYR A 628 1 15 SHEET 1 AA1 5 THR A 440 GLN A 443 0 SHEET 2 AA1 5 VAL A 470 ASP A 474 1 O LEU A 472 N THR A 440 SHEET 3 AA1 5 THR A 410 ILE A 418 1 N PHE A 415 O VAL A 471 SHEET 4 AA1 5 VAL A 502 ASN A 510 1 O ASP A 503 N THR A 410 SHEET 5 AA1 5 HIS A 574 HIS A 577 1 O ILE A 576 N ALA A 508 CISPEP 1 SER A 567 PRO A 568 0 1.85 SITE 1 AC1 23 GLY A 422 CYS A 423 GLY A 424 LYS A 425 SITE 2 AC1 23 THR A 426 THR A 427 ARG A 528 ARG A 532 SITE 3 AC1 23 GLY A 533 ASP A 534 ASP A 583 LYS A 588 SITE 4 AC1 23 SER A 589 SER A 590 LEU A 626 PO4 A 702 SITE 5 AC1 23 HOH A 802 HOH A 827 HOH A 871 HOH A 877 SITE 6 AC1 23 HOH A 898 HOH A 933 HOH A 956 SITE 1 AC2 7 LYS A 425 ASN A 445 ASN A 476 HIS A 536 SITE 2 AC2 7 IDP A 701 HOH A 802 HOH A 967 CRYST1 56.650 58.345 72.321 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013827 0.00000