HEADER HYDROLASE 15-AUG-19 6U10 TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH THE INHIBITOR TITLE 3 CAPTOPRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLO-BETA-LACTAMASE L1 (BETA-LACTAMASE TYPE II) COMPND 3 (EC 3.5.2.6) (PENICILLINASE); COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: SMLT2667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS METALLO-BETA-LACTAMASES, LACTAM ANTIBIOTICS, PENICILLIN G, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6U10 1 REMARK REVDAT 2 18-DEC-19 6U10 1 REMARK REVDAT 1 11-SEP-19 6U10 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH THE JRNL TITL 3 INHIBITOR CAPTOPRIL. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 59802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2200 - 3.9700 0.01 2857 159 0.1538 0.1600 REMARK 3 2 3.9700 - 3.1500 0.01 2704 141 0.1475 0.1872 REMARK 3 3 3.1500 - 2.7600 0.01 2659 142 0.1603 0.1754 REMARK 3 4 2.7600 - 2.5000 0.01 2682 119 0.1525 0.1461 REMARK 3 5 2.5000 - 2.3200 0.01 2615 145 0.1435 0.1452 REMARK 3 6 2.3200 - 2.1900 0.01 2618 152 0.1302 0.1616 REMARK 3 7 2.1900 - 2.0800 0.01 2634 122 0.1301 0.1583 REMARK 3 8 2.0800 - 1.9900 0.01 2601 138 0.1282 0.1556 REMARK 3 9 1.9900 - 1.9100 0.01 2585 142 0.1227 0.1479 REMARK 3 10 1.9100 - 1.8400 0.01 2605 133 0.1258 0.1545 REMARK 3 11 1.8400 - 1.7900 0.01 2596 134 0.1238 0.1797 REMARK 3 12 1.7900 - 1.7400 0.01 2587 135 0.1222 0.1610 REMARK 3 13 1.7400 - 1.6900 0.01 2568 145 0.1170 0.1602 REMARK 3 14 1.6900 - 1.6500 0.01 2588 141 0.1193 0.1637 REMARK 3 15 1.6500 - 1.6100 0.01 2557 156 0.1210 0.1438 REMARK 3 16 1.6100 - 1.5800 0.01 2565 139 0.1214 0.1633 REMARK 3 17 1.5800 - 1.5500 0.01 2560 142 0.1338 0.1834 REMARK 3 18 1.5500 - 1.5200 0.01 2560 153 0.1417 0.2096 REMARK 3 19 1.5200 - 1.4900 0.01 2581 125 0.1605 0.2029 REMARK 3 20 1.4900 - 1.4600 0.01 2583 134 0.1775 0.2158 REMARK 3 21 1.4600 - 1.4400 0.01 2578 114 0.1964 0.2252 REMARK 3 22 1.4400 - 1.4200 0.01 2543 134 0.2223 0.2782 REMARK 3 23 1.4200 - 1.4000 0.01 2376 127 0.2402 0.2477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2229 REMARK 3 ANGLE : 0.820 3044 REMARK 3 CHIRALITY : 0.074 332 REMARK 3 PLANARITY : 0.005 409 REMARK 3 DIHEDRAL : 22.960 818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6U0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 % (V/V) TACIMATE PH 7, 20 % (W/V) REMARK 280 PEG3350, PH 7.2, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.90767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.81533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.90767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.81533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.90767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.81533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.90767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.81533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.26850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -90.53170 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 32.90767 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -52.26850 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -90.53170 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 32.90767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 456 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 684 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 154.19 70.49 REMARK 500 ALA A 106 50.44 -93.02 REMARK 500 ASP A 192 -167.11 -100.52 REMARK 500 TYR A 220 73.09 -150.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 107 ND1 100.0 REMARK 620 3 HIS A 181 NE2 98.4 106.5 REMARK 620 4 X8Z A 303 S 122.3 121.6 105.0 REMARK 620 5 X8Z A 303 S 119.3 124.3 104.9 3.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 HIS A 110 NE2 100.2 REMARK 620 3 HIS A 246 NE2 96.6 98.5 REMARK 620 4 X8Z A 303 S 113.5 126.0 117.0 REMARK 620 5 X8Z A 303 S 116.3 123.1 117.4 3.2 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: L-CAPTOPRIL REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 X8Z A 303 REMARK 630 X8Z A 305 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PRO CC8 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8Z A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8Z A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U0Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO FORM REMARK 900 RELATED ID: 6U0Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO PENICILLIN G REMARK 900 RELATED ID: CSGID-IDP97218 RELATED DB: TARGETTRACK DBREF 6U10 A 19 290 UNP B2FTM1 B2FTM1_STRMK 19 290 SEQADV 6U10 SER A 17 UNP B2FTM1 EXPRESSION TAG SEQADV 6U10 ASN A 18 UNP B2FTM1 EXPRESSION TAG SEQRES 1 A 274 SER ASN ALA SER ALA ALA GLU ALA PRO LEU PRO GLN LEU SEQRES 2 A 274 ARG ALA TYR THR VAL ASP ALA SER TRP LEU GLN PRO MET SEQRES 3 A 274 ALA PRO LEU GLN VAL ALA ASP HIS THR TRP GLN ILE GLY SEQRES 4 A 274 THR GLU ASP LEU THR ALA LEU LEU VAL GLN THR ALA GLU SEQRES 5 A 274 GLY ALA VAL LEU LEU ASP GLY GLY MET PRO GLN MET ALA SEQRES 6 A 274 GLY HIS LEU LEU ASP ASN MET LYS LEU ARG GLY VAL ALA SEQRES 7 A 274 PRO GLN ASP LEU ARG LEU ILE LEU LEU SER HIS ALA HIS SEQRES 8 A 274 ALA ASP HIS ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG SEQRES 9 A 274 THR GLY ALA HIS VAL ALA ALA ASN ALA GLU THR ALA VAL SEQRES 10 A 274 LEU LEU ALA ARG GLY GLY SER ASN ASP LEU HIS PHE GLY SEQRES 11 A 274 ASP GLY ILE THR TYR PRO PRO ALA SER ALA ASP ARG ILE SEQRES 12 A 274 ILE MET ASP GLY GLU VAL VAL THR VAL GLY GLY ILE ALA SEQRES 13 A 274 PHE THR ALA HIS PHE MET PRO GLY HIS THR PRO GLY SER SEQRES 14 A 274 THR ALA TRP THR TRP THR ASP THR ARG ASP GLY LYS PRO SEQRES 15 A 274 VAL ARG ILE ALA TYR ALA ASP SER LEU SER ALA PRO GLY SEQRES 16 A 274 TYR GLN LEU LYS GLY ASN PRO ARG TYR PRO ARG LEU ILE SEQRES 17 A 274 GLU ASP TYR LYS ARG SER PHE ALA THR VAL ARG ALA LEU SEQRES 18 A 274 PRO CYS ASP LEU LEU LEU THR PRO HIS PRO GLY ALA SER SEQRES 19 A 274 ASN TRP ASN TYR ALA VAL GLY SER LYS ALA SER ALA GLU SEQRES 20 A 274 ALA LEU THR CYS ASN ALA TYR ALA ASP ALA ALA GLU LYS SEQRES 21 A 274 LYS PHE ASP ALA GLN LEU ALA ARG GLU THR ALA GLY THR SEQRES 22 A 274 ARG HET ZN A 301 1 HET ZN A 302 1 HET X8Z A 303 28 HET FMT A 304 3 HET X8Z A 305 14 HET FMT A 306 3 HET EDO A 307 4 HET FMT A 308 3 HET FMT A 309 3 HETNAM ZN ZINC ION HETNAM X8Z L-CAPTOPRIL HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 X8Z 2(C9 H15 N O3 S) FORMUL 5 FMT 4(C H2 O2) FORMUL 8 EDO C2 H6 O2 FORMUL 11 HOH *291(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 ARG A 91 1 12 HELIX 4 AA4 ALA A 94 GLN A 96 5 3 HELIX 5 AA5 HIS A 107 GLY A 112 1 6 HELIX 6 AA6 PRO A 113 GLY A 122 1 10 HELIX 7 AA7 ASN A 128 ARG A 137 1 10 HELIX 8 AA8 ARG A 222 ALA A 236 1 15 HELIX 9 AA9 HIS A 246 ASN A 251 5 6 HELIX 10 AB1 ASN A 253 ALA A 260 5 8 HELIX 11 AB2 THR A 266 ALA A 287 1 22 SHEET 1 AA1 7 LEU A 45 GLN A 46 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O GLN A 53 N LEU A 45 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O VAL A 71 N VAL A 64 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 HIS A 124 ALA A 127 1 O HIS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 159 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N VAL A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O TYR A 203 N TRP A 188 SHEET 5 AA2 5 LEU A 241 LEU A 243 1 O LEU A 241 N ALA A 202 SSBOND 1 CYS A 239 CYS A 267 1555 1555 2.71 LINK NE2 HIS A 105 ZN ZN A 302 1555 1555 2.05 LINK ND1 HIS A 107 ZN ZN A 302 1555 1555 2.07 LINK OD2 ASP A 109 ZN ZN A 301 1555 1555 1.97 LINK NE2 HIS A 110 ZN ZN A 301 1555 1555 2.02 LINK NE2 HIS A 181 ZN ZN A 302 1555 1555 2.04 LINK NE2 HIS A 246 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 S AX8Z A 303 1555 1555 2.32 LINK ZN ZN A 301 S BX8Z A 303 1555 1555 2.26 LINK ZN ZN A 302 S AX8Z A 303 1555 1555 2.30 LINK ZN ZN A 302 S BX8Z A 303 1555 1555 2.22 SITE 1 AC1 5 ASP A 109 HIS A 110 HIS A 246 X8Z A 303 SITE 2 AC1 5 FMT A 304 SITE 1 AC2 4 HIS A 105 HIS A 107 HIS A 181 X8Z A 303 SITE 1 AC3 13 TYR A 32 TRP A 38 HIS A 105 ASP A 109 SITE 2 AC3 13 PHE A 145 ILE A 149 HIS A 181 PRO A 210 SITE 3 AC3 13 HIS A 246 ZN A 301 ZN A 302 FMT A 304 SITE 4 AC3 13 HOH A 430 SITE 1 AC4 7 HIS A 181 SER A 206 SER A 208 HIS A 246 SITE 2 AC4 7 ZN A 301 X8Z A 303 HOH A 401 SITE 1 AC5 11 ARG A 119 ALA A 136 ARG A 137 ALA A 154 SITE 2 AC5 11 SER A 155 ALA A 156 ILE A 159 FMT A 309 SITE 3 AC5 11 HOH A 464 HOH A 529 HOH A 548 SITE 1 AC6 4 VAL A 47 ALA A 48 ARG A 194 HOH A 411 SITE 1 AC7 4 ARG A 200 HOH A 432 HOH A 477 HOH A 525 SITE 1 AC8 3 ARG A 194 ASP A 240 HOH A 585 SITE 1 AC9 7 ALA A 132 ALA A 136 ALA A 154 SER A 155 SITE 2 AC9 7 ALA A 156 X8Z A 305 HOH A 611 CRYST1 104.537 104.537 98.723 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009566 0.005523 0.000000 0.00000 SCALE2 0.000000 0.011046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010129 0.00000