HEADER IMMUNE SYSTEM 15-AUG-19 6U14 TITLE VHH R303 C33A/C102A IN COMPLEX WITHTHE LRR DOMAIN OF INLB COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH R303 C33A/C102A MUTANT; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_TAXID: 9838; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, VHH, INTERNALIN, LISTERIA, DISULFIDE BOND, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.N.MENDOZA,M.JIAN,M.TORIDE KING,C.L.BROOKS REVDAT 3 11-OCT-23 6U14 1 REMARK REVDAT 2 08-APR-20 6U14 1 JRNL REVDAT 1 12-FEB-20 6U14 0 JRNL AUTH M.N.MENDOZA,M.JIAN,M.T.KING,C.L.BROOKS JRNL TITL ROLE OF A NONCANONICAL DISULFIDE BOND IN THE STABILITY, JRNL TITL 2 AFFINITY, AND FLEXIBILITY OF A VHH SPECIFIC FOR THE LISTERIA JRNL TITL 3 VIRULENCE FACTOR INLB. JRNL REF PROTEIN SCI. V. 29 1004 2020 JRNL REFN ESSN 1469-896X JRNL PMID 31981247 JRNL DOI 10.1002/PRO.3831 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 53993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 3.4678 0.97 2916 154 0.1631 0.1719 REMARK 3 2 3.4678 - 2.7529 0.98 2810 148 0.1557 0.1751 REMARK 3 3 2.7529 - 2.4050 0.98 2749 145 0.1537 0.1740 REMARK 3 4 2.4050 - 2.1851 0.97 2752 144 0.1486 0.1444 REMARK 3 5 2.1851 - 2.0285 0.97 2694 142 0.1412 0.1525 REMARK 3 6 2.0285 - 1.9090 0.97 2703 143 0.1443 0.1895 REMARK 3 7 1.9090 - 1.8134 0.97 2696 141 0.1505 0.1630 REMARK 3 8 1.8134 - 1.7344 0.97 2705 143 0.1558 0.1815 REMARK 3 9 1.7344 - 1.6677 0.97 2673 141 0.1636 0.1846 REMARK 3 10 1.6677 - 1.6101 0.97 2698 142 0.1590 0.1994 REMARK 3 11 1.6101 - 1.5598 0.97 2656 139 0.1586 0.1883 REMARK 3 12 1.5598 - 1.5152 0.97 2699 142 0.1648 0.1840 REMARK 3 13 1.5152 - 1.4753 0.97 2663 141 0.1734 0.2075 REMARK 3 14 1.4753 - 1.4393 0.97 2665 140 0.1730 0.2106 REMARK 3 15 1.4393 - 1.4066 0.96 2655 139 0.1855 0.2344 REMARK 3 16 1.4066 - 1.3766 0.96 2631 139 0.1884 0.2526 REMARK 3 17 1.3766 - 1.3491 0.96 2640 139 0.1941 0.2184 REMARK 3 18 1.3491 - 1.3236 0.96 2630 138 0.2015 0.2317 REMARK 3 19 1.3236 - 1.3000 0.96 2658 140 0.2032 0.2524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3256 -0.0891 -4.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1116 REMARK 3 T33: 0.1040 T12: -0.0113 REMARK 3 T13: -0.0188 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.2159 L22: 6.5786 REMARK 3 L33: 6.4381 L12: 4.6985 REMARK 3 L13: -5.0480 L23: -4.6610 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.5375 S13: 0.0848 REMARK 3 S21: -0.2713 S22: 0.2090 S23: 0.3418 REMARK 3 S31: 0.2841 S32: -0.3133 S33: -0.0168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2624 -0.0216 -6.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.1255 REMARK 3 T33: 0.1216 T12: -0.0306 REMARK 3 T13: 0.0309 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.8254 L22: 6.4598 REMARK 3 L33: 5.9480 L12: 0.4457 REMARK 3 L13: 3.9348 L23: 0.9271 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: -0.0181 S13: 0.0018 REMARK 3 S21: -0.1005 S22: 0.0093 S23: -0.4314 REMARK 3 S31: -0.2484 S32: 0.3710 S33: -0.1460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3194 3.9292 -3.0657 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.0831 REMARK 3 T33: 0.0952 T12: -0.0033 REMARK 3 T13: -0.0278 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.6313 L22: 2.7641 REMARK 3 L33: 2.9631 L12: -0.3582 REMARK 3 L13: -2.7607 L23: -0.1996 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: 0.1150 S13: 0.0720 REMARK 3 S21: -0.1505 S22: 0.1168 S23: 0.1219 REMARK 3 S31: -0.1824 S32: -0.0121 S33: -0.0916 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1087 -1.0621 4.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0846 REMARK 3 T33: 0.1225 T12: 0.0132 REMARK 3 T13: -0.0239 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.7064 L22: 2.8831 REMARK 3 L33: 2.5246 L12: -0.4074 REMARK 3 L13: -0.0937 L23: 0.1816 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.0572 S13: 0.1632 REMARK 3 S21: -0.0080 S22: -0.1319 S23: 0.4190 REMARK 3 S31: -0.2084 S32: -0.2829 S33: 0.0612 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9443 -6.4665 5.7633 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0741 REMARK 3 T33: 0.0790 T12: -0.0012 REMARK 3 T13: -0.0056 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0966 L22: 8.0448 REMARK 3 L33: 4.4240 L12: -1.5329 REMARK 3 L13: -1.8428 L23: 5.0660 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: -0.1256 S13: -0.1742 REMARK 3 S21: 0.1793 S22: -0.0339 S23: 0.2550 REMARK 3 S31: 0.0653 S32: 0.0643 S33: 0.1281 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8340 2.8415 9.1988 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1243 REMARK 3 T33: 0.0718 T12: -0.0209 REMARK 3 T13: -0.0318 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.7105 L22: 3.7556 REMARK 3 L33: 4.3679 L12: 0.2657 REMARK 3 L13: -0.3909 L23: 0.6746 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.1411 S13: 0.0983 REMARK 3 S21: 0.0116 S22: -0.0314 S23: -0.0217 REMARK 3 S31: -0.2506 S32: 0.3545 S33: 0.0848 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1733 -0.0347 0.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0630 REMARK 3 T33: 0.0596 T12: -0.0069 REMARK 3 T13: -0.0234 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8927 L22: 1.4361 REMARK 3 L33: 1.8224 L12: 0.2994 REMARK 3 L13: -0.7691 L23: 0.4025 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.1377 S13: 0.1185 REMARK 3 S21: -0.0359 S22: 0.0118 S23: -0.0589 REMARK 3 S31: -0.1990 S32: 0.0768 S33: 0.0181 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9339 -4.7513 12.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1378 REMARK 3 T33: 0.0782 T12: -0.0063 REMARK 3 T13: 0.0028 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 7.5653 L22: 2.6650 REMARK 3 L33: 5.6360 L12: -3.7988 REMARK 3 L13: -3.3628 L23: 1.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.5566 S13: 0.0823 REMARK 3 S21: 0.5318 S22: -0.0476 S23: 0.0414 REMARK 3 S31: -0.1631 S32: -0.2078 S33: 0.0103 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7975 -7.0179 -2.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0560 REMARK 3 T33: 0.0829 T12: 0.0032 REMARK 3 T13: -0.0050 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 7.1747 L22: 1.0195 REMARK 3 L33: 4.1129 L12: 1.6252 REMARK 3 L13: -4.5111 L23: -0.7915 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: 0.2744 S13: -0.1090 REMARK 3 S21: -0.0584 S22: 0.0063 S23: -0.1413 REMARK 3 S31: 0.0588 S32: -0.1450 S33: 0.1056 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9561 -4.8860 18.6186 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.1499 REMARK 3 T33: 0.0999 T12: 0.0020 REMARK 3 T13: -0.0158 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 4.3998 L22: 4.3928 REMARK 3 L33: 3.4995 L12: -3.2590 REMARK 3 L13: 0.8193 L23: -2.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: 0.2156 S13: -0.3403 REMARK 3 S21: -0.1449 S22: -0.0899 S23: 0.0881 REMARK 3 S31: 0.2581 S32: 0.1167 S33: 0.0264 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6449 3.9901 23.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.1069 REMARK 3 T33: 0.0559 T12: 0.0041 REMARK 3 T13: -0.0091 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.9034 L22: 3.2621 REMARK 3 L33: 3.7768 L12: 1.2544 REMARK 3 L13: -1.0471 L23: 0.2797 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.1355 S13: 0.1020 REMARK 3 S21: -0.0767 S22: 0.1053 S23: -0.0650 REMARK 3 S31: -0.1135 S32: 0.2449 S33: -0.0892 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8263 -0.8504 30.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1721 REMARK 3 T33: 0.1152 T12: -0.0030 REMARK 3 T13: 0.0132 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.0046 L22: 5.9339 REMARK 3 L33: 2.0202 L12: 4.0011 REMARK 3 L13: 0.9202 L23: 2.0917 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.3532 S13: 0.1651 REMARK 3 S21: 0.2658 S22: -0.2464 S23: 0.3037 REMARK 3 S31: 0.2079 S32: -0.1256 S33: 0.1148 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9695 -2.2402 32.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2115 REMARK 3 T33: 0.1026 T12: 0.0520 REMARK 3 T13: -0.0298 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.4864 L22: 4.5726 REMARK 3 L33: 2.4374 L12: 1.2225 REMARK 3 L13: -1.1321 L23: 0.1955 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.2233 S13: -0.1677 REMARK 3 S21: 0.4127 S22: 0.1082 S23: -0.1532 REMARK 3 S31: 0.1774 S32: 0.3917 S33: -0.0018 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0481 -4.7542 24.5188 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1583 REMARK 3 T33: 0.0983 T12: 0.0384 REMARK 3 T13: 0.0014 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.9718 L22: 8.2782 REMARK 3 L33: 1.4669 L12: 1.3889 REMARK 3 L13: 0.2269 L23: 0.4968 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.0193 S13: -0.2924 REMARK 3 S21: 0.0091 S22: 0.1190 S23: 0.0323 REMARK 3 S31: 0.2400 S32: 0.2199 S33: 0.0105 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9997 3.1829 26.7715 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0918 REMARK 3 T33: 0.0585 T12: -0.0007 REMARK 3 T13: 0.0022 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.1088 L22: 6.0581 REMARK 3 L33: 3.8900 L12: -0.2303 REMARK 3 L13: -0.8237 L23: 3.2886 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: 0.0217 S13: -0.0835 REMARK 3 S21: -0.0329 S22: -0.0544 S23: 0.0168 REMARK 3 S31: -0.0069 S32: -0.0676 S33: 0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.284 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04984 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33650 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DBA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 4.8 WITH 2 M REMARK 280 AMMONIUM SULFATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 GLU B 126 REMARK 465 GLN B 127 REMARK 465 LYS B 128 REMARK 465 LEU B 129 REMARK 465 ILE B 130 REMARK 465 SER B 131 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 LEU B 135 REMARK 465 ASN B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 GLN A 1 REMARK 465 HIS A 27 REMARK 465 THR A 28 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 GLN A 127 REMARK 465 LYS A 128 REMARK 465 LEU A 129 REMARK 465 ILE A 130 REMARK 465 SER A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 LEU A 135 REMARK 465 ASN A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 5 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 7 CB SER B 7 OG -0.108 REMARK 500 MET B 83 SD MET B 83 CE -0.341 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 6 OE1 - CD - OE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 MET B 34 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 GLU B 89 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 66 -35.06 79.16 REMARK 500 ALA A 92 164.47 178.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U12 RELATED DB: PDB REMARK 900 SAME PROTEIN BUT NOT COMPLEXED DBREF 6U14 B 1 142 PDB 6U14 6U14 1 142 DBREF 6U14 A 1 142 PDB 6U14 6U14 1 142 SEQRES 1 B 142 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 142 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 142 HIS THR TYR SER THR TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 B 142 VAL PRO GLY LYS GLU ARG GLU GLY VAL ALA ARG ILE ASN SEQRES 5 B 142 VAL GLY GLY SER SER THR TRP TYR ALA ASP SER VAL ARG SEQRES 6 B 142 ASP ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 B 142 VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP THR SEQRES 8 B 142 ALA ILE TYR TYR CYS THR LEU HIS ARG PHE ALA ASN THR SEQRES 9 B 142 TRP SER LEU GLY THR LEU ASN VAL TRP GLY GLN GLY THR SEQRES 10 B 142 GLN VAL THR VAL SER SER GLY SER GLU GLN LYS LEU ILE SEQRES 11 B 142 SER GLU GLU ASP LEU ASN HIS HIS HIS HIS HIS HIS SEQRES 1 A 142 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 A 142 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 142 HIS THR TYR SER THR TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 A 142 VAL PRO GLY LYS GLU ARG GLU GLY VAL ALA ARG ILE ASN SEQRES 5 A 142 VAL GLY GLY SER SER THR TRP TYR ALA ASP SER VAL ARG SEQRES 6 A 142 ASP ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 A 142 VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP THR SEQRES 8 A 142 ALA ILE TYR TYR CYS THR LEU HIS ARG PHE ALA ASN THR SEQRES 9 A 142 TRP SER LEU GLY THR LEU ASN VAL TRP GLY GLN GLY THR SEQRES 10 A 142 GLN VAL THR VAL SER SER GLY SER GLU GLN LYS LEU ILE SEQRES 11 A 142 SER GLU GLU ASP LEU ASN HIS HIS HIS HIS HIS HIS HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *301(H2 O) HELIX 1 AA1 ASP B 62 ARG B 65 5 4 HELIX 2 AA2 LYS B 87 THR B 91 5 5 HELIX 3 AA3 PHE B 101 SER B 106 1 6 HELIX 4 AA4 LYS A 87 THR A 91 5 5 HELIX 5 AA5 PHE A 101 SER A 106 1 6 SHEET 1 AA1 4 VAL B 2 GLY B 8 0 SHEET 2 AA1 4 LEU B 18 GLY B 26 -1 O ALA B 23 N GLU B 5 SHEET 3 AA1 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA1 4 PHE B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 AA2 4 GLY B 10 GLN B 13 0 SHEET 2 AA2 4 THR B 117 SER B 122 1 O SER B 122 N VAL B 12 SHEET 3 AA2 4 ALA B 92 HIS B 99 -1 N TYR B 94 O THR B 117 SHEET 4 AA2 4 VAL B 112 TRP B 113 -1 O VAL B 112 N LEU B 98 SHEET 1 AA310 GLY B 10 GLN B 13 0 SHEET 2 AA310 THR B 117 SER B 122 1 O SER B 122 N VAL B 12 SHEET 3 AA310 ALA B 92 HIS B 99 -1 N TYR B 94 O THR B 117 SHEET 4 AA310 TYR B 32 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA310 GLU B 46 VAL B 53 -1 O GLU B 46 N ARG B 38 SHEET 6 AA310 THR B 58 TYR B 60 -1 O TRP B 59 N ARG B 50 SHEET 7 AA310 LYS A 3 SER A 7 1 O GLU A 6 N THR B 58 SHEET 8 AA310 LEU A 18 SER A 25 -1 O ALA A 23 N GLU A 5 SHEET 9 AA310 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 10 AA310 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA4 6 GLY A 10 GLN A 13 0 SHEET 2 AA4 6 THR A 117 SER A 122 1 O GLN A 118 N GLY A 10 SHEET 3 AA4 6 ALA A 92 HIS A 99 -1 N TYR A 94 O THR A 117 SHEET 4 AA4 6 TYR A 32 GLN A 39 -1 N ALA A 33 O HIS A 99 SHEET 5 AA4 6 GLU A 46 VAL A 53 -1 O VAL A 48 N TRP A 36 SHEET 6 AA4 6 THR A 58 TYR A 60 -1 O TRP A 59 N ARG A 50 SHEET 1 AA5 4 GLY A 10 GLN A 13 0 SHEET 2 AA5 4 THR A 117 SER A 122 1 O GLN A 118 N GLY A 10 SHEET 3 AA5 4 ALA A 92 HIS A 99 -1 N TYR A 94 O THR A 117 SHEET 4 AA5 4 VAL A 112 TRP A 113 -1 O VAL A 112 N LEU A 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 96 1555 1555 2.03 SITE 1 AC1 9 LYS A 43 TRP A 113 GLN A 115 HOH A 334 SITE 2 AC1 9 ASN B 52 GLY B 55 SER B 56 SER B 57 SITE 3 AC1 9 HOH B 305 SITE 1 AC2 6 GLN B 39 PRO B 41 GLY B 42 HOH B 333 SITE 2 AC2 6 HOH B 351 HOH B 377 SITE 1 AC3 4 ASN A 52 SER A 56 SER A 57 HOH A 400 CRYST1 47.280 47.380 99.340 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010066 0.00000