HEADER OXIDOREDUCTASE/INHIBITOR 25-AUG-19 6U4J TITLE CRYSTAL STRUCTURE OF IDH1 R132H MUTANT IN COMPLEX WITH FT-2102 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IDH,CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE,IDP,NADP(+)- COMPND 5 SPECIFIC ICDH,OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IDH1, ALLOSTERIC INHIBITOR, OXIDOREDUCTASE, INHIBITOR COMPLEX, KEYWDS 2 OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.V.TOMS,J.LIN REVDAT 3 11-OCT-23 6U4J 1 REMARK REVDAT 2 11-MAR-20 6U4J 1 JRNL REVDAT 1 04-MAR-20 6U4J 0 JRNL AUTH J.A.CARAVELLA,J.LIN,R.B.DIEBOLD,A.M.CAMPBELL,A.ERICSSON, JRNL AUTH 2 G.GUSTAFSON,Z.WANG,J.CASTRO,A.CLARKE,D.GOTUR,H.R.JOSEPHINE, JRNL AUTH 3 M.KATZ,M.KERSHAW,L.YAO,A.V.TOMS,K.J.BARR,C.J.DINSMORE, JRNL AUTH 4 D.WALKER,S.ASHWELL,W.LU JRNL TITL STRUCTURE-BASED DESIGN AND IDENTIFICATION OF FT-2102 JRNL TITL 2 (OLUTASIDENIB), A POTENT MUTANT-SELECTIVE IDH1 INHIBITOR. JRNL REF J.MED.CHEM. V. 63 1612 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31971798 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01423 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2785 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1143 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2081 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1093 REMARK 3 BIN R VALUE (WORKING SET) : 0.2055 REMARK 3 BIN FREE R VALUE : 0.2658 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 50 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6553 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58540 REMARK 3 B22 (A**2) : 0.17260 REMARK 3 B33 (A**2) : -1.75790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.22510 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.209 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.175 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 13707 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 24751 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3090 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 2263 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 13707 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 912 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 14379 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.54 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|*} REMARK 3 ORIGIN FOR THE GROUP (A): 14.6091 6.4673 17.0620 REMARK 3 T TENSOR REMARK 3 T11: -0.1075 T22: -0.0869 REMARK 3 T33: -0.1083 T12: -0.0278 REMARK 3 T13: 0.0234 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.3353 L22: 1.2943 REMARK 3 L33: 0.7287 L12: -0.4911 REMARK 3 L13: 0.1725 L23: 0.5140 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.2422 S13: 0.2723 REMARK 3 S21: -0.0565 S22: -0.0161 S23: -0.0946 REMARK 3 S31: -0.0790 S32: 0.0203 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|*} REMARK 3 ORIGIN FOR THE GROUP (A): 17.5123 -26.8757 16.0669 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: -0.1490 REMARK 3 T33: -0.0772 T12: 0.0431 REMARK 3 T13: 0.0109 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 1.0999 L22: 0.3949 REMARK 3 L33: 1.9812 L12: 0.2226 REMARK 3 L13: -0.2857 L23: -0.6068 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: -0.0010 S13: -0.2385 REMARK 3 S21: -0.2222 S22: 0.0453 S23: -0.0611 REMARK 3 S31: 0.5456 S32: 0.2024 S33: -0.0155 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 47.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3INM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3000, 0.1 M SODIUM CITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.91250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 415 REMARK 465 LEU B 416 REMARK 465 GLU B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 41 O HOH B 601 1.70 REMARK 500 CE MET B 13 O HOH B 604 1.73 REMARK 500 OE1 GLU A 174 O HOH A 602 1.75 REMARK 500 OD2 ASP B 137 O HOH B 602 1.85 REMARK 500 O HOH A 955 O HOH A 1039 1.86 REMARK 500 O HOH B 743 O HOH B 809 1.96 REMARK 500 O HOH A 792 O HOH A 946 2.00 REMARK 500 NH1 ARG B 338 O HOH B 603 2.00 REMARK 500 NZ LYS A 218 O HOH A 603 2.00 REMARK 500 CE2 TYR B 319 O HOH B 605 2.03 REMARK 500 OH TYR A 285 O HOH A 604 2.03 REMARK 500 OE1 GLU A 173 O HOH A 605 2.06 REMARK 500 N VAL B 71 O HOH B 604 2.12 REMARK 500 O HOH B 903 O HOH B 937 2.13 REMARK 500 OH TYR B 319 O HOH B 605 2.13 REMARK 500 O GLY A 286 O HOH A 606 2.15 REMARK 500 CD ARG A 109 O HOH A 815 2.16 REMARK 500 O HOH B 764 O HOH B 872 2.17 REMARK 500 O THR B 157 O HOH B 606 2.17 REMARK 500 N7N NAP B 501 O HOH B 607 2.18 REMARK 500 O2N NAP A 501 O HOH A 607 2.18 REMARK 500 O HOH A 824 O HOH A 1032 2.18 REMARK 500 OE2 GLU B 403 O HOH B 608 2.19 REMARK 500 O GLY A 286 O HOH A 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -128.22 43.59 REMARK 500 ILE A 31 -63.64 -100.33 REMARK 500 GLU B 17 -128.42 43.27 REMARK 500 ILE B 31 -64.37 -99.91 REMARK 500 ASN B 68 -1.28 71.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1091 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 969 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PWV A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PWV B 504 DBREF 6U4J A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 6U4J B 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 6U4J HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 6U4J SER A 415 UNP O75874 EXPRESSION TAG SEQADV 6U4J LEU A 416 UNP O75874 EXPRESSION TAG SEQADV 6U4J GLU A 417 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 418 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 419 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 420 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 421 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 422 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 423 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 424 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS A 425 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 6U4J SER B 415 UNP O75874 EXPRESSION TAG SEQADV 6U4J LEU B 416 UNP O75874 EXPRESSION TAG SEQADV 6U4J GLU B 417 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 418 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 419 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 420 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 421 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 422 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 423 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 424 UNP O75874 EXPRESSION TAG SEQADV 6U4J HIS B 425 UNP O75874 EXPRESSION TAG SEQRES 1 A 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 A 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 B 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS HET NAP A 501 96 HET CL A 502 1 HET PWV A 503 25 HET NAP B 501 48 HET CL B 502 1 HET FLC B 503 13 HET PWV B 504 25 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CL CHLORIDE ION HETNAM PWV 5-{[(1S)-1-(6-CHLORO-2-OXO-1,2-DIHYDROQUINOLIN-3-YL) HETNAM 2 PWV ETHYL]AMINO}-1-METHYL-6-OXO-1,6-DIHYDROPYRIDINE-2- HETNAM 3 PWV CARBONITRILE HETNAM FLC CITRATE ANION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 CL 2(CL 1-) FORMUL 5 PWV 2(C18 H15 CL N4 O2) FORMUL 8 FLC C6 H5 O7 3- FORMUL 10 HOH *860(H2 O) HELIX 1 AA1 ASP A 16 LEU A 30 1 15 HELIX 2 AA2 GLY A 45 THR A 52 1 8 HELIX 3 AA3 ASP A 54 ASN A 68 1 15 HELIX 4 AA4 ASP A 79 LYS A 87 1 9 HELIX 5 AA5 SER A 94 GLY A 104 1 11 HELIX 6 AA6 GLY A 136 TYR A 139 5 4 HELIX 7 AA7 ASP A 186 GLY A 204 1 19 HELIX 8 AA8 LYS A 218 TYR A 235 1 18 HELIX 9 AA9 TYR A 235 GLN A 242 1 8 HELIX 10 AB1 ILE A 251 SER A 261 1 11 HELIX 11 AB2 ASP A 275 SER A 278 5 4 HELIX 12 AB3 ASP A 279 TYR A 285 1 7 HELIX 13 AB4 SER A 287 GLY A 289 5 3 HELIX 14 AB5 VAL A 312 LYS A 321 1 10 HELIX 15 AB6 PRO A 329 ASN A 348 1 20 HELIX 16 AB7 ASN A 349 ALA A 369 1 21 HELIX 17 AB8 THR A 373 GLY A 382 1 10 HELIX 18 AB9 LEU A 383 VAL A 386 5 4 HELIX 19 AC1 GLN A 387 TYR A 391 5 5 HELIX 20 AC2 ASN A 393 SER A 415 1 23 HELIX 21 AC3 ASP B 16 LEU B 30 1 15 HELIX 22 AC4 GLY B 45 THR B 52 1 8 HELIX 23 AC5 ASP B 54 ASN B 68 1 15 HELIX 24 AC6 ASP B 79 LYS B 87 1 9 HELIX 25 AC7 SER B 94 GLY B 104 1 11 HELIX 26 AC8 GLY B 136 TYR B 139 5 4 HELIX 27 AC9 ASP B 186 GLY B 204 1 19 HELIX 28 AD1 LYS B 218 TYR B 235 1 18 HELIX 29 AD2 TYR B 235 GLN B 242 1 8 HELIX 30 AD3 ILE B 251 SER B 261 1 11 HELIX 31 AD4 ASP B 275 SER B 278 5 4 HELIX 32 AD5 ASP B 279 TYR B 285 1 7 HELIX 33 AD6 SER B 287 GLY B 289 5 3 HELIX 34 AD7 VAL B 312 LYS B 321 1 10 HELIX 35 AD8 PRO B 329 ASN B 348 1 20 HELIX 36 AD9 ASN B 349 ALA B 369 1 21 HELIX 37 AE1 THR B 373 GLY B 382 1 10 HELIX 38 AE2 LEU B 383 VAL B 386 5 4 HELIX 39 AE3 GLN B 387 TYR B 391 5 5 HELIX 40 AE4 ASN B 393 LYS B 413 1 21 SHEET 1 AA110 VAL A 35 ASP A 43 0 SHEET 2 AA110 ILE A 5 GLN A 14 1 N ILE A 5 O GLU A 36 SHEET 3 AA110 VAL A 69 LYS A 72 1 O VAL A 69 N VAL A 11 SHEET 4 AA110 VAL A 303 ALA A 307 1 O ALA A 305 N LYS A 72 SHEET 5 AA110 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 AA110 THR A 106 ALA A 111 -1 N PHE A 108 O VAL A 294 SHEET 7 AA110 ILE A 128 HIS A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 AA110 PHE A 265 CYS A 269 1 O CYS A 269 N GLY A 131 SHEET 9 AA110 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 AA110 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 AA2 4 ALA A 141 VAL A 146 0 SHEET 2 AA2 4 GLY A 177 GLN A 185 -1 O GLY A 181 N THR A 142 SHEET 3 AA2 4 GLY B 177 GLN B 185 -1 O VAL B 178 N ASN A 184 SHEET 4 AA2 4 ALA B 141 VAL B 146 -1 N THR B 142 O GLY B 181 SHEET 1 AA3 4 VAL A 165 PHE A 172 0 SHEET 2 AA3 4 GLY A 150 PRO A 158 -1 N ILE A 154 O TYR A 167 SHEET 3 AA3 4 GLY B 150 PRO B 158 -1 O GLU B 153 N THR A 155 SHEET 4 AA3 4 VAL B 165 PHE B 172 -1 O TYR B 167 N ILE B 154 SHEET 1 AA410 VAL B 35 ASP B 43 0 SHEET 2 AA410 ILE B 5 GLN B 14 1 N ILE B 5 O GLU B 36 SHEET 3 AA410 VAL B 69 LYS B 72 1 O VAL B 69 N VAL B 11 SHEET 4 AA410 VAL B 303 ALA B 307 1 O ALA B 305 N LYS B 72 SHEET 5 AA410 MET B 291 VAL B 296 -1 N LEU B 295 O GLU B 304 SHEET 6 AA410 THR B 106 ALA B 111 -1 N PHE B 108 O VAL B 294 SHEET 7 AA410 ILE B 128 HIS B 132 -1 O ILE B 130 N ARG B 109 SHEET 8 AA410 PHE B 265 CYS B 269 1 O CYS B 269 N GLY B 131 SHEET 9 AA410 LEU B 207 THR B 211 1 N TYR B 208 O ALA B 268 SHEET 10 AA410 TYR B 246 LEU B 250 1 O ARG B 249 N LEU B 209 SITE 1 AC1 34 LYS A 72 ALA A 74 THR A 75 ILE A 76 SITE 2 AC1 34 THR A 77 ARG A 82 ASN A 96 VAL A 276 SITE 3 AC1 34 GLN A 277 GLU A 306 ALA A 307 ALA A 308 SITE 4 AC1 34 HIS A 309 GLY A 310 THR A 311 VAL A 312 SITE 5 AC1 34 THR A 313 ARG A 314 HIS A 315 ASN A 328 SITE 6 AC1 34 HOH A 601 HOH A 607 HOH A 614 HOH A 616 SITE 7 AC1 34 HOH A 618 HOH A 657 HOH A 668 HOH A 727 SITE 8 AC1 34 HOH A 770 HOH A 774 HOH A 799 HOH A 837 SITE 9 AC1 34 HOH A 891 LYS B 260 SITE 1 AC2 3 ASN A 271 TYR A 272 ASP A 273 SITE 1 AC3 15 ARG A 109 ALA A 111 ILE A 113 LEU A 120 SITE 2 AC3 15 TRP A 124 PRO A 127 ILE A 128 ILE A 130 SITE 3 AC3 15 MET A 259 TRP A 267 ASP A 279 VAL A 281 SITE 4 AC3 15 ALA A 282 TYR A 285 HOH A 632 SITE 1 AC4 26 THR B 75 ILE B 76 THR B 77 ARG B 82 SITE 2 AC4 26 VAL B 276 GLN B 277 GLY B 289 ALA B 308 SITE 3 AC4 26 HIS B 309 GLY B 310 THR B 311 VAL B 312 SITE 4 AC4 26 THR B 313 ARG B 314 HIS B 315 ASN B 328 SITE 5 AC4 26 HOH B 607 HOH B 626 HOH B 647 HOH B 649 SITE 6 AC4 26 HOH B 663 HOH B 681 HOH B 683 HOH B 702 SITE 7 AC4 26 HOH B 783 HOH B 829 SITE 1 AC5 3 ASN B 271 TYR B 272 ASP B 273 SITE 1 AC6 4 LYS B 374 LEU B 383 PRO B 384 VAL B 386 SITE 1 AC7 16 SER A 280 ARG B 109 ALA B 111 ILE B 113 SITE 2 AC7 16 ARG B 119 LEU B 120 TRP B 124 PRO B 127 SITE 3 AC7 16 ILE B 128 ILE B 130 MET B 259 TRP B 267 SITE 4 AC7 16 ASP B 279 VAL B 281 ALA B 282 TYR B 285 CRYST1 69.328 97.825 75.243 90.00 98.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014424 0.000000 0.002133 0.00000 SCALE2 0.000000 0.010222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013435 0.00000