HEADER TRANSCRIPTION/INHIBITOR 28-AUG-19 6U61 TITLE BRD2-BD1 IN COMPLEX WITH THE CYCLIC PEPTIDE 3.1_3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYCLIC PEPTIDE 3.1_3; COMPND 7 CHAIN: E, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS BET, BROMODOMAIN, MACROCYCLIC PEPTIDE, BRD2, INHIBITOR, RAPID, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.PATEL,J.L.WALSHE,L.J.WALPORT,J.P.MACKAY REVDAT 4 15-NOV-23 6U61 1 REMARK REVDAT 3 11-OCT-23 6U61 1 REMARK REVDAT 2 03-MAR-21 6U61 1 JRNL REVDAT 1 19-AUG-20 6U61 0 JRNL AUTH K.PATEL,L.J.WALPORT,J.L.WALSHE,P.D.SOLOMON,J.K.K.LOW, JRNL AUTH 2 D.H.TRAN,K.S.MOURADIAN,A.P.G.SILVA,L.WILKINSON-WHITE, JRNL AUTH 3 A.NORMAN,C.FRANCK,J.M.MATTHEWS,J.M.GUSS,R.J.PAYNE, JRNL AUTH 4 T.PASSIOURA,H.SUGA,J.P.MACKAY JRNL TITL CYCLIC PEPTIDES CAN ENGAGE A SINGLE BINDING POCKET THROUGH JRNL TITL 2 HIGHLY DIVERGENT MODES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 26728 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33046654 JRNL DOI 10.1073/PNAS.2003086117 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3800 - 4.1600 1.00 2671 140 0.1980 0.2405 REMARK 3 2 4.1600 - 3.3000 1.00 2551 135 0.2013 0.2438 REMARK 3 3 3.3000 - 2.8800 1.00 2542 143 0.2392 0.2695 REMARK 3 4 2.8800 - 2.6200 1.00 2526 133 0.2560 0.2771 REMARK 3 5 2.6200 - 2.4300 1.00 2532 125 0.2690 0.3308 REMARK 3 6 2.4300 - 2.2900 0.98 2423 150 0.2923 0.3422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.299 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2235 REMARK 3 ANGLE : 0.519 3013 REMARK 3 CHIRALITY : 0.039 313 REMARK 3 PLANARITY : 0.003 377 REMARK 3 DIHEDRAL : 10.554 1347 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : 0.9537 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 49.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ONI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZINC CHLORIDE, 0.1 M MES PH REMARK 280 6.0, 20 % W/V PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.76900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.37600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.76900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.37600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.74000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.76900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.37600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.74000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.76900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.37600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 59 REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 LEU A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 GLU A 65 REMARK 465 VAL A 66 REMARK 465 SER A 67 REMARK 465 ASN A 68 REMARK 465 PRO A 69 REMARK 465 VAL A 188 REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 GLN B 59 REMARK 465 GLY B 60 REMARK 465 PRO B 61 REMARK 465 LEU B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 GLU B 65 REMARK 465 VAL B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 PRO B 69 REMARK 465 LYS B 70 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS E 11 O - C - N ANGL. DEV. = -25.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 85 -55.18 -122.03 REMARK 500 VAL B 85 -54.78 -121.25 REMARK 500 ALY E 6 -32.59 74.61 REMARK 500 ALY D 6 -38.57 74.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 131 OE2 128.9 REMARK 620 3 GLU B 183 OE2 43.7 135.6 REMARK 620 4 HOH B 326 O 103.6 104.7 59.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 GLU B 131 OE2 120.6 REMARK 620 3 HOH B 328 O 116.8 104.3 REMARK 620 4 HOH B 331 O 92.8 97.3 124.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and TRP D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and CYS D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO D 5 and ALY D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY D 6 and VAL D 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS D 8 and ALY D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY D 9 and GLY D 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS D 11 and NH2 D REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE E 0 and CYS E 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE E 0 and TRP E 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO E 5 and ALY E 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY E 6 and VAL E 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS E 8 and ALY E 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY E 9 and GLY E 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS E 11 and NH2 E REMARK 800 12 DBREF 6U61 A 65 194 UNP H0Y6K2 H0Y6K2_HUMAN 71 200 DBREF 6U61 B 65 194 UNP H0Y6K2 H0Y6K2_HUMAN 71 200 DBREF 6U61 E 0 12 PDB 6U61 6U61 0 12 DBREF 6U61 D 0 12 PDB 6U61 6U61 0 12 SEQADV 6U61 GLN A 59 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 GLY A 60 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 PRO A 61 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 LEU A 62 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 GLY A 63 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 SER A 64 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 GLN B 59 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 GLY B 60 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 PRO B 61 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 LEU B 62 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 GLY B 63 UNP H0Y6K2 EXPRESSION TAG SEQADV 6U61 SER B 64 UNP H0Y6K2 EXPRESSION TAG SEQRES 1 A 136 GLN GLY PRO LEU GLY SER GLU VAL SER ASN PRO LYS LYS SEQRES 2 A 136 PRO GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS SEQRES 3 A 136 VAL VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 136 PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU SEQRES 5 A 136 PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET SEQRES 6 A 136 GLY THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 136 ALA ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE SEQRES 8 A 136 THR ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE SEQRES 9 A 136 VAL LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN SEQRES 10 A 136 LYS VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL SEQRES 11 A 136 VAL THR ILE PRO LYS ASN SEQRES 1 B 136 GLN GLY PRO LEU GLY SER GLU VAL SER ASN PRO LYS LYS SEQRES 2 B 136 PRO GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS SEQRES 3 B 136 VAL VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 B 136 PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU SEQRES 5 B 136 PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET SEQRES 6 B 136 GLY THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 B 136 ALA ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE SEQRES 8 B 136 THR ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE SEQRES 9 B 136 VAL LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN SEQRES 10 B 136 LYS VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL SEQRES 11 B 136 VAL THR ILE PRO LYS ASN SEQRES 1 E 13 ACE TRP TRP ILE ILE PRO ALY VAL LYS ALY GLY CYS NH2 SEQRES 1 D 13 ACE TRP TRP ILE ILE PRO ALY VAL LYS ALY GLY CYS NH2 HET ACE E 0 3 HET ALY E 6 12 HET ALY E 9 12 HET NH2 E 12 1 HET ACE D 0 3 HET ALY D 6 12 HET ALY D 9 12 HET NH2 D 12 1 HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 3 NH2 2(H2 N) FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *77(H2 O) HELIX 1 AA1 THR A 76 VAL A 85 1 10 HELIX 2 AA2 VAL A 85 LYS A 92 1 8 HELIX 3 AA3 ALA A 96 ARG A 100 5 5 HELIX 4 AA4 ASP A 104 GLY A 109 1 6 HELIX 5 AA5 ASP A 112 ILE A 117 1 6 HELIX 6 AA6 ASP A 122 ASN A 132 1 11 HELIX 7 AA7 ALA A 137 ASN A 156 1 20 HELIX 8 AA8 ASP A 160 ALA A 178 1 19 HELIX 9 AA9 THR B 76 VAL B 85 1 10 HELIX 10 AB1 VAL B 85 LYS B 92 1 8 HELIX 11 AB2 ALA B 96 ARG B 100 5 5 HELIX 12 AB3 ASP B 104 GLY B 109 1 6 HELIX 13 AB4 ASP B 112 ILE B 117 1 6 HELIX 14 AB5 ASP B 122 ASN B 132 1 11 HELIX 15 AB6 ALA B 137 ASN B 156 1 20 HELIX 16 AB7 ASP B 160 ALA B 178 1 19 SHEET 1 AA1 2 TRP E 2 ILE E 4 0 SHEET 2 AA1 2 LYS E 8 ALY E 9 -1 O LYS E 8 N ILE E 4 SHEET 1 AA2 2 TRP D 2 ILE D 4 0 SHEET 2 AA2 2 LYS D 8 ALY D 9 -1 O LYS D 8 N ILE D 4 LINK C ACE E 0 N TRP E 1 1555 1555 1.33 LINK CH3 ACE E 0 SG CYS E 11 1555 1555 1.77 LINK C PRO E 5 N ALY E 6 1555 1555 1.33 LINK C ALY E 6 N VAL E 7 1555 1555 1.33 LINK C LYS E 8 N ALY E 9 1555 1555 1.33 LINK C ALY E 9 N GLY E 10 1555 1555 1.33 LINK C CYS E 11 N NH2 E 12 1555 1555 1.43 LINK C ACE D 0 N TRP D 1 1555 1555 1.33 LINK CH3 ACE D 0 SG CYS D 11 1555 1555 1.77 LINK C PRO D 5 N ALY D 6 1555 1555 1.33 LINK C ALY D 6 N VAL D 7 1555 1555 1.33 LINK C LYS D 8 N ALY D 9 1555 1555 1.33 LINK C ALY D 9 N GLY D 10 1555 1555 1.33 LINK C CYS D 11 N NH2 D 12 1555 1555 1.43 LINK NE2 HIS A 83 ZN ZN A 201 1555 1555 2.14 LINK ND1 HIS A 114 ZN ZN A 202 1555 1555 2.05 LINK OE2 GLU A 131 ZN ZN A 201 1555 1555 2.09 LINK ZN ZN A 201 OE2 GLU B 183 8445 1555 2.02 LINK ZN ZN A 201 O HOH B 326 1555 8545 2.11 LINK NE2 HIS B 83 ZN ZN B 201 1555 1555 2.05 LINK OE2 GLU B 131 ZN ZN B 201 1555 1555 2.23 LINK ZN ZN B 201 O HOH B 328 1555 1555 1.98 LINK ZN ZN B 201 O HOH B 331 1555 1555 2.69 SITE 1 AC1 4 HIS A 83 GLU A 131 GLU B 183 HOH B 326 SITE 1 AC2 1 HIS A 114 SITE 1 AC3 5 HIS B 83 GLU B 131 HOH B 328 HOH B 331 SITE 2 AC3 5 HOH B 332 SITE 1 AC4 7 MET A 142 ASN A 146 TRP B 97 TRP D 2 SITE 2 AC4 7 ALY D 9 GLY D 10 CYS D 11 SITE 1 AC5 4 TRP B 97 TRP D 1 GLY D 10 NH2 D 12 SITE 1 AC6 12 PHE B 99 VAL B 103 LEU B 108 ASN B 156 SITE 2 AC6 12 ASP B 160 ASP B 161 ILE B 162 HOH B 309 SITE 3 AC6 12 TRP D 2 ILE D 4 VAL D 7 LYS D 8 SITE 1 AC7 11 PHE B 99 VAL B 103 ASN B 156 ASP B 160 SITE 2 AC7 11 ASP B 161 ILE B 162 HOH B 309 TRP D 2 SITE 3 AC7 11 ILE D 4 PRO D 5 LYS D 8 SITE 1 AC8 9 GLN A 182 ASP B 161 TRP D 1 TRP D 2 SITE 2 AC8 9 ILE D 3 ILE D 4 ALY D 6 VAL D 7 SITE 3 AC8 9 GLY D 10 SITE 1 AC9 5 ASP B 161 TRP D 1 TRP D 2 LYS D 8 SITE 2 AC9 5 CYS D 11 SITE 1 AD1 4 TRP B 97 ACE D 0 TRP D 1 GLY D 10 SITE 1 AD2 5 TRP A 97 TRP E 1 ALY E 9 GLY E 10 SITE 2 AD2 5 NH2 E 12 SITE 1 AD3 6 TRP A 97 TRP E 2 ILE E 3 ALY E 9 SITE 2 AD3 6 GLY E 10 CYS E 11 SITE 1 AD4 14 PHE A 99 VAL A 103 LEU A 108 ASN A 156 SITE 2 AD4 14 ASP A 160 ASP A 161 ILE A 162 HOH A 306 SITE 3 AD4 14 TRP E 2 ILE E 4 VAL E 7 LYS E 8 SITE 4 AD4 14 HOH E 202 HOH E 203 SITE 1 AD5 13 PHE A 99 VAL A 103 ASN A 156 LYS A 157 SITE 2 AD5 13 ASP A 160 ASP A 161 ILE A 162 HOH A 306 SITE 3 AD5 13 TRP E 2 ILE E 4 PRO E 5 LYS E 8 SITE 4 AD5 13 HOH E 202 SITE 1 AD6 14 ASP A 161 MET A 165 THR A 168 LYS A 171 SITE 2 AD6 14 GLN A 175 GLY B 109 TRP E 1 TRP E 2 SITE 3 AD6 14 ILE E 3 ILE E 4 ALY E 6 VAL E 7 SITE 4 AD6 14 GLY E 10 CYS E 11 SITE 1 AD7 9 ASP A 161 MET A 165 THR A 168 LYS A 171 SITE 2 AD7 9 GLN A 175 TRP E 1 TRP E 2 LYS E 8 SITE 3 AD7 9 CYS E 11 SITE 1 AD8 6 TRP A 97 ILE A 172 ACE E 0 TRP E 1 SITE 2 AD8 6 ALY E 9 GLY E 10 CRYST1 69.538 86.752 115.480 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008660 0.00000