HEADER APOPTOSIS/INHIBITOR 29-AUG-19 6U63 TITLE MCL-1 BOUND TO COMPOUND 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 3 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: BCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN COMPND 6 EAT/MCL1,MCL1/EAT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-APOPTOTIC, INHIBITOR, PROTEIN BINDING, APOPTOSIS-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.STUCKEY REVDAT 3 13-MAR-24 6U63 1 REMARK REVDAT 2 25-MAR-20 6U63 1 JRNL REVDAT 1 04-MAR-20 6U63 0 JRNL AUTH K.J.KUMP,L.MIAO,A.S.A.MADY,N.H.ANSARI,U.K.SHRESTHA,Y.YANG, JRNL AUTH 2 M.PAL,C.LIAO,A.PERDIH,F.A.ABULWERDI,K.CHINNASWAMY, JRNL AUTH 3 J.L.MEAGHER,J.M.CARLSON,M.KHANNA,J.A.STUCKEY, JRNL AUTH 4 Z.NIKOLOVSKA-COLESKA JRNL TITL DISCOVERY AND CHARACTERIZATION OF 2,5-SUBSTITUTED BENZOIC JRNL TITL 2 ACID DUAL INHIBITORS OF THE ANTI-APOPTOTIC MCL-1 AND BFL-1 JRNL TITL 3 PROTEINS. JRNL REF J.MED.CHEM. V. 63 2489 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31971799 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01442 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 14204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2815 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2563 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2648 REMARK 3 BIN R VALUE (WORKING SET) : 0.2516 REMARK 3 BIN FREE R VALUE : 0.3337 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 173 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.58920 REMARK 3 B22 (A**2) : -9.01870 REMARK 3 B33 (A**2) : 5.42950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.407 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.397 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4505 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6116 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2005 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 827 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4505 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 596 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5439 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|172 - 321} REMARK 3 ORIGIN FOR THE GROUP (A): 47.0732 29.6433 61.5991 REMARK 3 T TENSOR REMARK 3 T11: -0.0854 T22: -0.1155 REMARK 3 T33: -0.0720 T12: 0.0516 REMARK 3 T13: -0.0053 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.7210 L22: 3.0971 REMARK 3 L33: 1.7702 L12: -0.3038 REMARK 3 L13: -0.1563 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.1553 S13: 0.0744 REMARK 3 S21: 0.1986 S22: 0.0157 S23: -0.1118 REMARK 3 S31: 0.1356 S32: 0.0127 S33: 0.0690 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|172 - 321} REMARK 3 ORIGIN FOR THE GROUP (A): 53.0154 59.6875 53.9206 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: -0.1246 REMARK 3 T33: -0.0802 T12: -0.0327 REMARK 3 T13: 0.0125 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.0527 L22: 3.5435 REMARK 3 L33: 1.9479 L12: 1.1950 REMARK 3 L13: 0.9389 L23: 1.4516 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.0315 S13: -0.0905 REMARK 3 S21: -0.0933 S22: 0.0254 S23: -0.0047 REMARK 3 S31: 0.0809 S32: -0.0490 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {C|171 - 320} REMARK 3 ORIGIN FOR THE GROUP (A): 62.9165 51.8678 90.4692 REMARK 3 T TENSOR REMARK 3 T11: -0.0872 T22: -0.0992 REMARK 3 T33: -0.1357 T12: -0.0287 REMARK 3 T13: -0.0798 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.1284 L22: 2.6088 REMARK 3 L33: 5.5943 L12: 0.0968 REMARK 3 L13: 0.7867 L23: -0.5795 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.2475 S13: 0.0413 REMARK 3 S21: -0.2009 S22: 0.0980 S23: 0.0163 REMARK 3 S31: 0.0361 S32: -0.1517 S33: -0.0753 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {D|172 - 320} REMARK 3 ORIGIN FOR THE GROUP (A): 32.7672 34.3657 89.2619 REMARK 3 T TENSOR REMARK 3 T11: -0.1040 T22: -0.0638 REMARK 3 T33: -0.0885 T12: -0.0454 REMARK 3 T13: 0.0409 T23: 0.0688 REMARK 3 L TENSOR REMARK 3 L11: 2.4827 L22: 1.2685 REMARK 3 L33: 5.6668 L12: -0.8676 REMARK 3 L13: 1.1244 L23: 0.0248 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.1833 S13: -0.0504 REMARK 3 S21: -0.0202 S22: 0.1937 S23: -0.0437 REMARK 3 S31: -0.1315 S32: -0.0599 S33: -0.2328 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000244030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96295 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % PEG 3350, 0.1 M TRIS PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.17000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.17000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 168 REMARK 465 ASN A 169 REMARK 465 ALA A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 197 REMARK 465 PRO A 198 REMARK 465 MET A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 SER B 168 REMARK 465 ASN B 169 REMARK 465 ALA B 170 REMARK 465 GLU B 171 REMARK 465 ALA B 193 REMARK 465 LYS B 194 REMARK 465 ASP B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 PRO B 198 REMARK 465 MET B 199 REMARK 465 GLY B 200 REMARK 465 ARG B 201 REMARK 465 GLU B 322 REMARK 465 ASP B 323 REMARK 465 SER C 168 REMARK 465 ASN C 169 REMARK 465 ALA C 170 REMARK 465 LYS C 194 REMARK 465 ASP C 195 REMARK 465 THR C 196 REMARK 465 LYS C 197 REMARK 465 PRO C 198 REMARK 465 MET C 199 REMARK 465 GLY C 200 REMARK 465 ARG C 201 REMARK 465 SER C 202 REMARK 465 LYS C 238 REMARK 465 ASN C 239 REMARK 465 GLU C 240 REMARK 465 VAL C 321 REMARK 465 GLU C 322 REMARK 465 ASP C 323 REMARK 465 SER D 168 REMARK 465 ASN D 169 REMARK 465 ALA D 170 REMARK 465 GLU D 171 REMARK 465 PRO D 198 REMARK 465 MET D 199 REMARK 465 GLY D 200 REMARK 465 ARG D 201 REMARK 465 VAL D 321 REMARK 465 GLU D 322 REMARK 465 ASP D 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 ARG A 176 CD NE CZ NH1 NH2 REMARK 470 GLU A 180 OE1 OE2 REMARK 470 ARG A 184 NE CZ NH1 NH2 REMARK 470 ALA A 193 CB REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 SER A 202 OG REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 208 CD CE NZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 ARG A 233 CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 276 NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 321 CG1 CG2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 ARG B 176 CD NE CZ NH1 NH2 REMARK 470 GLU B 180 OE1 OE2 REMARK 470 ARG B 184 NE CZ NH1 NH2 REMARK 470 THR B 205 OG1 CG2 REMARK 470 SER B 206 OG REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 208 CD CE NZ REMARK 470 VAL B 220 CG1 CG2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 223 CG OD1 ND2 REMARK 470 LYS B 238 CE NZ REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 LEU B 246 CG CD1 CD2 REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 276 NZ REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 ASP B 296 CG OD1 OD2 REMARK 470 LYS B 308 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 321 CG1 CG2 REMARK 470 GLU C 173 CG CD OE1 OE2 REMARK 470 ARG C 176 CD NE CZ NH1 NH2 REMARK 470 GLU C 180 OE1 OE2 REMARK 470 ARG C 187 CG CD NE CZ NH1 NH2 REMARK 470 ALA C 193 CB REMARK 470 THR C 205 OG1 CG2 REMARK 470 SER C 206 CB OG REMARK 470 ARG C 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 208 CD CE NZ REMARK 470 ARG C 215 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 225 CG CD OE1 OE2 REMARK 470 LYS C 244 CG CD CE NZ REMARK 470 LEU C 246 CG CD1 CD2 REMARK 470 ARG C 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 276 NZ REMARK 470 LYS C 279 CG CD CE NZ REMARK 470 GLU C 284 CG CD OE1 OE2 REMARK 470 SER C 285 OG REMARK 470 ILE C 287 CG1 CG2 CD1 REMARK 470 ASP C 296 CG OD1 OD2 REMARK 470 LYS C 308 CG CD CE NZ REMARK 470 ARG C 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 313 CG OD1 OD2 REMARK 470 HIS C 320 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 173 CG CD OE1 OE2 REMARK 470 ARG D 176 CD NE CZ NH1 NH2 REMARK 470 GLU D 180 OE1 OE2 REMARK 470 ARG D 184 NE CZ NH1 NH2 REMARK 470 ARG D 187 CG CD NE CZ NH1 NH2 REMARK 470 ALA D 193 CB REMARK 470 LYS D 194 CG CD CE NZ REMARK 470 ASP D 195 CG OD1 OD2 REMARK 470 THR D 205 OG1 CG2 REMARK 470 ARG D 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 208 CD CE NZ REMARK 470 GLU D 211 CG CD OE1 OE2 REMARK 470 ARG D 215 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 218 CG OD1 OD2 REMARK 470 GLU D 225 CG CD OE1 OE2 REMARK 470 ARG D 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 234 CG CD CE NZ REMARK 470 ASP D 236 CG OD1 OD2 REMARK 470 ILE D 237 CG1 CG2 CD1 REMARK 470 LYS D 238 CG CD CE NZ REMARK 470 GLU D 240 CG CD OE1 OE2 REMARK 470 LYS D 244 CG CD CE NZ REMARK 470 LEU D 246 CG CD1 CD2 REMARK 470 ARG D 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 276 NZ REMARK 470 LYS D 279 CG CD CE NZ REMARK 470 ASN D 282 CG OD1 ND2 REMARK 470 ILE D 287 CG1 CG2 CD1 REMARK 470 ASP D 296 CG OD1 OD2 REMARK 470 LYS D 308 CG CD CE NZ REMARK 470 HIS D 320 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 191 -135.82 -118.00 REMARK 500 ASP A 195 76.20 -111.05 REMARK 500 SER A 202 -169.43 -116.49 REMARK 500 ASP A 236 75.42 47.58 REMARK 500 LYS A 238 -21.33 -141.59 REMARK 500 PHE A 319 47.73 -105.38 REMARK 500 THR B 191 -69.71 -98.16 REMARK 500 HIS B 320 95.22 -69.64 REMARK 500 THR D 191 -40.52 -144.72 REMARK 500 ALA D 193 -122.32 -155.69 REMARK 500 LYS D 194 -64.73 -121.69 REMARK 500 ASP D 236 84.39 54.48 REMARK 500 LYS D 238 -27.67 -143.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 Q0D A 402 REMARK 610 Q0D B 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q0D D 500 DBREF 6U63 A 171 323 UNP Q07820 MCL1_HUMAN 171 323 DBREF 6U63 B 171 323 UNP Q07820 MCL1_HUMAN 171 323 DBREF 6U63 C 171 323 UNP Q07820 MCL1_HUMAN 171 323 DBREF 6U63 D 171 323 UNP Q07820 MCL1_HUMAN 171 323 SEQADV 6U63 SER A 168 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ASN A 169 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ALA A 170 UNP Q07820 EXPRESSION TAG SEQADV 6U63 SER B 168 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ASN B 169 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ALA B 170 UNP Q07820 EXPRESSION TAG SEQADV 6U63 SER C 168 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ASN C 169 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ALA C 170 UNP Q07820 EXPRESSION TAG SEQADV 6U63 SER D 168 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ASN D 169 UNP Q07820 EXPRESSION TAG SEQADV 6U63 ALA D 170 UNP Q07820 EXPRESSION TAG SEQRES 1 A 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 A 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 A 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 A 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 A 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 A 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 A 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 A 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 A 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 A 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 A 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 A 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP SEQRES 1 B 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 B 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 B 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 B 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 B 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 B 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 B 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 B 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 B 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 B 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 B 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 B 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP SEQRES 1 C 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 C 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 C 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 C 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 C 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 C 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 C 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 C 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 C 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 C 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 C 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 C 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP SEQRES 1 D 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 D 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 D 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 D 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 D 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 D 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 D 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 D 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 D 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 D 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 D 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 D 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP HET Q0D A 401 32 HET Q0D A 402 23 HET Q0D B 401 32 HET Q0D B 402 22 HET Q0D C 500 32 HET Q0D D 500 32 HETNAM Q0D 2-{[(NAPHTHALEN-2-YL)SULFONYL]AMINO}-5-[(2- HETNAM 2 Q0D PHENYLETHYL)SULFANYL]BENZOIC ACID FORMUL 5 Q0D 6(C25 H21 N O4 S2) FORMUL 11 HOH *24(H2 O) HELIX 1 AA1 ASP A 172 THR A 191 1 20 HELIX 2 AA2 GLY A 203 HIS A 224 1 22 HELIX 3 AA3 HIS A 224 ASP A 236 1 13 HELIX 4 AA4 ASN A 239 ASP A 256 1 18 HELIX 5 AA5 ASN A 260 ILE A 281 1 22 HELIX 6 AA6 GLN A 283 SER A 285 5 3 HELIX 7 AA7 CYS A 286 GLN A 309 1 24 HELIX 8 AA8 GLY A 311 PHE A 319 1 9 HELIX 9 AA9 GLU B 173 THR B 191 1 19 HELIX 10 AB1 GLY B 203 HIS B 224 1 22 HELIX 11 AB2 HIS B 224 ASP B 236 1 13 HELIX 12 AB3 ASN B 239 ASP B 256 1 18 HELIX 13 AB4 ASN B 260 ILE B 281 1 22 HELIX 14 AB5 GLN B 283 SER B 285 5 3 HELIX 15 AB6 CYS B 286 LYS B 302 1 17 HELIX 16 AB7 LYS B 302 GLN B 309 1 8 HELIX 17 AB8 ARG B 310 HIS B 320 1 11 HELIX 18 AB9 ASP C 172 THR C 191 1 20 HELIX 19 AC1 ALA C 204 HIS C 224 1 21 HELIX 20 AC2 HIS C 224 ASP C 236 1 13 HELIX 21 AC3 SER C 245 SER C 255 1 11 HELIX 22 AC4 ASN C 260 ILE C 281 1 22 HELIX 23 AC5 GLN C 283 SER C 285 5 3 HELIX 24 AC6 CYS C 286 GLN C 309 1 24 HELIX 25 AC7 TRP C 312 PHE C 319 1 8 HELIX 26 AC8 GLU D 173 THR D 191 1 19 HELIX 27 AC9 GLY D 203 HIS D 224 1 22 HELIX 28 AD1 HIS D 224 ASP D 236 1 13 HELIX 29 AD2 ASN D 239 PHE D 254 1 16 HELIX 30 AD3 ASN D 260 ILE D 281 1 22 HELIX 31 AD4 GLN D 283 SER D 285 5 3 HELIX 32 AD5 CYS D 286 GLN D 309 1 24 HELIX 33 AD6 TRP D 312 HIS D 320 1 9 CISPEP 1 ALA A 193 LYS A 194 0 0.16 CISPEP 2 ALA D 193 LYS D 194 0 0.35 CISPEP 3 LYS D 194 ASP D 195 0 -1.77 SITE 1 AC1 13 HIS A 224 MET A 231 MET A 250 VAL A 253 SITE 2 AC1 13 PHE A 254 ARG A 263 THR A 266 LEU A 267 SITE 3 AC1 13 PHE A 270 Q0D A 402 THR C 226 ALA C 227 SITE 4 AC1 13 Q0D C 500 SITE 1 AC2 7 LYS A 234 LYS A 308 Q0D A 401 Q0D B 402 SITE 2 AC2 7 LYS C 234 HIS C 252 Q0D C 500 SITE 1 AC3 12 MET B 231 MET B 250 VAL B 253 PHE B 254 SITE 2 AC3 12 ARG B 263 THR B 266 LEU B 267 Q0D B 402 SITE 3 AC3 12 THR D 226 ALA D 227 GLY D 230 Q0D D 500 SITE 1 AC4 4 Q0D A 402 HIS B 252 Q0D B 401 LYS C 234 SITE 1 AC5 10 ALA A 227 GLY A 230 Q0D A 401 Q0D A 402 SITE 2 AC5 10 MET C 231 VAL C 253 PHE C 254 ARG C 263 SITE 3 AC5 10 THR C 266 PHE C 270 SITE 1 AC6 15 THR B 226 ALA B 227 GLY B 230 MET B 231 SITE 2 AC6 15 Q0D B 401 MET D 231 LEU D 235 VAL D 249 SITE 3 AC6 15 MET D 250 VAL D 253 PHE D 254 ARG D 263 SITE 4 AC6 15 THR D 266 LEU D 267 PHE D 270 CRYST1 68.980 69.600 110.340 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009063 0.00000