HEADER APOPTOSIS/INHIBITOR 29-AUG-19 6U6F TITLE THE CRYSTAL STRUCTURE OF ANTI-APOPTOTIC MCL-1 PROTEIN IN COMPLEX WITH TITLE 2 2, 5-SUBSTITUTED BENZOIC ACID INHIBITOR 21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 3 1; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: BCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN COMPND 6 EAT/MCL1,MCL1/EAT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOPTOSIS, MCL1, BFL1/A1, PROTEIN-PROTEIN INTERACTION, BH3 MIMETICS, KEYWDS 2 CANCER, APOPTOSIS-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,J.A.STUCKEY,Z.NIKOLOVSKA-COLESKA REVDAT 3 11-OCT-23 6U6F 1 REMARK REVDAT 2 25-MAR-20 6U6F 1 JRNL REVDAT 1 04-MAR-20 6U6F 0 JRNL AUTH K.J.KUMP,L.MIAO,A.S.A.MADY,N.H.ANSARI,U.K.SHRESTHA,Y.YANG, JRNL AUTH 2 M.PAL,C.LIAO,A.PERDIH,F.A.ABULWERDI,K.CHINNASWAMY, JRNL AUTH 3 J.L.MEAGHER,J.M.CARLSON,M.KHANNA,J.A.STUCKEY, JRNL AUTH 4 Z.NIKOLOVSKA-COLESKA JRNL TITL DISCOVERY AND CHARACTERIZATION OF 2,5-SUBSTITUTED BENZOIC JRNL TITL 2 ACID DUAL INHIBITORS OF THE ANTI-APOPTOTIC MCL-1 AND BFL-1 JRNL TITL 3 PROTEINS. JRNL REF J.MED.CHEM. V. 63 2489 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31971799 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01442 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 29 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 419 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2917 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 407 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3118 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 12 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.60510 REMARK 3 B22 (A**2) : -3.60510 REMARK 3 B33 (A**2) : 7.21020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.450 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.457 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3704 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5022 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1288 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 630 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3704 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 477 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4382 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.89 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000244027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12245 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.80 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 20-22.5%, 0.1 M BIS-TRIS 6.5, REMARK 280 0.28 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.21667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 242.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.82500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 303.04167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.60833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.21667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 242.43333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 303.04167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 181.82500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.60833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 168 REMARK 465 ASN A 169 REMARK 465 ALA A 170 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 GLU B 322 REMARK 465 ASP B 323 REMARK 465 SER C 168 REMARK 465 ASN C 169 REMARK 465 ALA C 170 REMARK 465 GLU C 171 REMARK 465 ASP C 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 THR A 196 OG1 CG2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CE NZ REMARK 470 GLU A 292 CD OE1 OE2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 VAL A 321 CG1 CG2 REMARK 470 LYS B 197 CD CE NZ REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 SER B 202 OG REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 208 CE NZ REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 VAL B 249 CG1 CG2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 GLU B 284 OE1 OE2 REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 LYS B 308 CE NZ REMARK 470 ARG B 310 NE CZ NH1 NH2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 470 ASP C 172 CG OD1 OD2 REMARK 470 GLU C 180 CG CD OE1 OE2 REMARK 470 ARG C 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 194 CG CD CE NZ REMARK 470 THR C 196 OG1 CG2 REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 ARG C 201 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 208 CG CD CE NZ REMARK 470 GLU C 211 CG CD OE1 OE2 REMARK 470 GLU C 225 CG CD OE1 OE2 REMARK 470 LYS C 238 CE NZ REMARK 470 LYS C 244 CG CD CE NZ REMARK 470 MET C 250 CG SD CE REMARK 470 ILE C 251 CG1 CG2 CD1 REMARK 470 VAL C 265 CG1 CG2 REMARK 470 LYS C 279 CG CD CE NZ REMARK 470 ASN C 282 CG OD1 ND2 REMARK 470 GLU C 284 CG CD OE1 OE2 REMARK 470 VAL C 297 CG1 CG2 REMARK 470 VAL C 299 CG1 CG2 REMARK 470 LYS C 308 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 236 71.15 52.17 REMARK 500 ASP B 236 77.41 47.00 REMARK 500 LYS B 238 13.63 -144.09 REMARK 500 ARG C 201 -105.31 55.73 REMARK 500 HIS C 224 71.20 -107.90 REMARK 500 SER C 255 43.02 -82.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PZY A 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZY C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U63 RELATED DB: PDB REMARK 900 RELATED ID: 6U64 RELATED DB: PDB REMARK 900 RELATED ID: 6U65 RELATED DB: PDB REMARK 900 RELATED ID: 6U67 RELATED DB: PDB DBREF 6U6F A 171 323 UNP Q07820 MCL1_HUMAN 171 323 DBREF 6U6F B 171 323 UNP Q07820 MCL1_HUMAN 171 323 DBREF 6U6F C 171 323 UNP Q07820 MCL1_HUMAN 171 323 SEQADV 6U6F SER A 168 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ASN A 169 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ALA A 170 UNP Q07820 EXPRESSION TAG SEQADV 6U6F SER B 168 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ASN B 169 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ALA B 170 UNP Q07820 EXPRESSION TAG SEQADV 6U6F SER C 168 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ASN C 169 UNP Q07820 EXPRESSION TAG SEQADV 6U6F ALA C 170 UNP Q07820 EXPRESSION TAG SEQRES 1 A 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 A 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 A 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 A 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 A 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 A 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 A 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 A 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 A 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 A 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 A 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 A 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP SEQRES 1 B 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 B 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 B 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 B 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 B 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 B 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 B 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 B 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 B 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 B 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 B 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 B 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP SEQRES 1 C 156 SER ASN ALA GLU ASP GLU LEU TYR ARG GLN SER LEU GLU SEQRES 2 C 156 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA SEQRES 3 C 156 LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER SEQRES 4 C 156 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY SEQRES 5 C 156 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU SEQRES 6 C 156 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER SEQRES 7 C 156 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL SEQRES 8 C 156 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY SEQRES 9 C 156 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SEQRES 10 C 156 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL SEQRES 11 C 156 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG SEQRES 12 C 156 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP HET PZY A 401 39 HET PZY A 402 23 HET PZY B 401 39 HET PZY C 401 39 HETNAM PZY 2-[({4-[(4-TERT-BUTYLPHENYL)METHYL]PIPERAZIN-1- HETNAM 2 PZY YL}SULFONYL)AMINO]-5-[(2-PHENYLETHYL)SULFANYL]BENZOIC HETNAM 3 PZY ACID FORMUL 4 PZY 4(C30 H37 N3 O4 S2) FORMUL 8 HOH *52(H2 O) HELIX 1 AA1 GLU A 171 GLY A 192 1 22 HELIX 2 AA2 ALA A 204 HIS A 224 1 21 HELIX 3 AA3 HIS A 224 ASP A 236 1 13 HELIX 4 AA4 ASN A 239 LEU A 246 1 8 HELIX 5 AA5 LEU A 246 SER A 255 1 10 HELIX 6 AA6 ASN A 260 ILE A 281 1 22 HELIX 7 AA7 GLN A 283 SER A 285 5 3 HELIX 8 AA8 CYS A 286 LYS A 302 1 17 HELIX 9 AA9 LYS A 302 GLN A 309 1 8 HELIX 10 AB1 GLY A 311 PHE A 319 1 9 HELIX 11 AB2 ASN B 169 GLY B 192 1 24 HELIX 12 AB3 SER B 202 HIS B 224 1 23 HELIX 13 AB4 HIS B 224 ASP B 236 1 13 HELIX 14 AB5 ASN B 239 SER B 255 1 17 HELIX 15 AB6 ASN B 260 ILE B 281 1 22 HELIX 16 AB7 GLN B 283 SER B 285 5 3 HELIX 17 AB8 CYS B 286 GLN B 309 1 24 HELIX 18 AB9 GLY B 311 PHE B 319 1 9 HELIX 19 AC1 GLU C 173 GLY C 192 1 20 HELIX 20 AC2 SER C 202 HIS C 224 1 23 HELIX 21 AC3 GLU C 225 ASP C 236 1 12 HELIX 22 AC4 ASN C 239 VAL C 253 1 15 HELIX 23 AC5 ASN C 260 ILE C 281 1 22 HELIX 24 AC6 GLN C 283 SER C 285 5 3 HELIX 25 AC7 CYS C 286 GLN C 309 1 24 HELIX 26 AC8 ARG C 310 PHE C 319 1 10 SITE 1 AC1 9 MET A 231 LEU A 246 MET A 250 ARG A 263 SITE 2 AC1 9 THR A 266 LEU A 267 GLY C 230 ARG C 233 SITE 3 AC1 9 PZY C 401 SITE 1 AC2 3 HIS A 252 LYS C 234 PZY C 401 SITE 1 AC3 11 ALA B 227 GLY B 230 MET B 231 LEU B 246 SITE 2 AC3 11 SER B 247 MET B 250 VAL B 253 ARG B 263 SITE 3 AC3 11 THR B 266 PHE B 270 LEU B 290 SITE 1 AC4 10 GLY A 230 MET A 231 ARG A 233 PZY A 401 SITE 2 AC4 10 PZY A 402 MET C 231 VAL C 253 PHE C 254 SITE 3 AC4 10 ARG C 263 THR C 266 CRYST1 68.450 68.450 363.650 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014609 0.008435 0.000000 0.00000 SCALE2 0.000000 0.016869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002750 0.00000