data_6U7Y
#
_entry.id 6U7Y
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.395
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6U7Y pdb_00006u7y 10.2210/pdb6u7y/pdb
WWPDB D_1000244102 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2020-12-09
2 'Structure model' 1 1 2021-01-06
3 'Structure model' 1 2 2021-02-03
4 'Structure model' 1 3 2023-10-11
5 'Structure model' 2 0 2024-07-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Refinement description'
6 5 'Structure model' Advisory
7 5 'Structure model' 'Atomic model'
8 5 'Structure model' 'Data collection'
9 5 'Structure model' 'Derived calculations'
10 5 'Structure model' 'Non-polymer description'
11 5 'Structure model' 'Polymer sequence'
12 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' citation
3 4 'Structure model' chem_comp_atom
4 4 'Structure model' chem_comp_bond
5 4 'Structure model' database_2
6 4 'Structure model' pdbx_initial_refinement_model
7 5 'Structure model' atom_site
8 5 'Structure model' chem_comp
9 5 'Structure model' chem_comp_atom
10 5 'Structure model' chem_comp_bond
11 5 'Structure model' entity_poly
12 5 'Structure model' entity_poly_seq
13 5 'Structure model' ndb_struct_na_base_pair
14 5 'Structure model' ndb_struct_na_base_pair_step
15 5 'Structure model' pdbx_entity_nonpoly
16 5 'Structure model' pdbx_nonpoly_scheme
17 5 'Structure model' pdbx_poly_seq_scheme
18 5 'Structure model' pdbx_unobs_or_zero_occ_atoms
19 5 'Structure model' struct_conn
20 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.pdbx_database_id_DOI'
2 2 'Structure model' '_citation.pdbx_database_id_PubMed'
3 2 'Structure model' '_citation.title'
4 3 'Structure model' '_citation.journal_volume'
5 3 'Structure model' '_citation.page_first'
6 3 'Structure model' '_citation.page_last'
7 3 'Structure model' '_citation.year'
8 4 'Structure model' '_database_2.pdbx_DOI'
9 4 'Structure model' '_database_2.pdbx_database_accession'
10 5 'Structure model' '_atom_site.B_iso_or_equiv'
11 5 'Structure model' '_atom_site.Cartn_x'
12 5 'Structure model' '_atom_site.Cartn_y'
13 5 'Structure model' '_atom_site.Cartn_z'
14 5 'Structure model' '_atom_site.auth_atom_id'
15 5 'Structure model' '_atom_site.auth_comp_id'
16 5 'Structure model' '_atom_site.group_PDB'
17 5 'Structure model' '_atom_site.label_atom_id'
18 5 'Structure model' '_atom_site.label_comp_id'
19 5 'Structure model' '_atom_site.type_symbol'
20 5 'Structure model' '_chem_comp.formula'
21 5 'Structure model' '_chem_comp.formula_weight'
22 5 'Structure model' '_chem_comp.id'
23 5 'Structure model' '_chem_comp.mon_nstd_flag'
24 5 'Structure model' '_chem_comp.name'
25 5 'Structure model' '_chem_comp.type'
26 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code'
27 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
28 5 'Structure model' '_entity_poly_seq.mon_id'
29 5 'Structure model' '_pdbx_entity_nonpoly.comp_id'
30 5 'Structure model' '_pdbx_nonpoly_scheme.mon_id'
31 5 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id'
32 5 'Structure model' '_pdbx_poly_seq_scheme.mon_id'
33 5 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id'
34 5 'Structure model' '_struct_site.details'
35 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6U7Y
_pdbx_database_status.recvd_initial_deposition_date 2019-09-03
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Szostak, J.W.' 1 ?
'Zhang, W.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_id_ASTM NARHAD
_citation.journal_id_CSD 0389
_citation.journal_id_ISSN 1362-4962
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 49
_citation.language ?
_citation.page_first 646
_citation.page_last 656
_citation.title
'Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization.'
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1093/nar/gkaa1215
_citation.pdbx_database_id_PubMed 33347562
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zhang, W.' 1 ?
primary 'Kim, S.C.' 2 ?
primary 'Tam, C.P.' 3 ?
primary 'Lelyveld, V.S.' 4 ?
primary 'Bala, S.' 5 ?
primary 'Chaput, J.C.' 6 ?
primary 'Szostak, J.W.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;RNA (5'-R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*(TG)P*CP*CP*GP*AP*AP*AP*GP*G)-3')
;
7121.296 1 ? ? ? ?
2 polymer syn
;RNA (5'-R(*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3')
;
3765.256 1 ? ? ? ?
3 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 1 ? ? ? ?
4 water nat water 18.015 1 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polyribonucleotide no yes '(C5P)UGCUGGCUAAGG(TG)CCGAAAGG' XUGCUGGCUAAGGXCCGAAAGG A ?
2 polyribonucleotide no no CUAUGCCUGCUG CUAUGCCUGCUG B ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 "CYTIDINE-5'-MONOPHOSPHATE" C5P
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 C5P n
1 2 U n
1 3 G n
1 4 C n
1 5 U n
1 6 G n
1 7 G n
1 8 C n
1 9 U n
1 10 A n
1 11 A n
1 12 G n
1 13 G n
1 14 TG n
1 15 C n
1 16 C n
1 17 G n
1 18 A n
1 19 A n
1 20 A n
1 21 G n
1 22 G n
2 1 C n
2 2 U n
2 3 A n
2 4 U n
2 5 G n
2 6 C n
2 7 C n
2 8 U n
2 9 G n
2 10 C n
2 11 U n
2 12 G n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 22 'synthetic construct' ? 32630 ?
2 1 sample 1 12 'synthetic construct' ? 32630 ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
C5P non-polymer . "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
HOH non-polymer . WATER ? 'H2 O' 18.015
TG 'RNA linking' n
'2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' ?
'C9 H11 N5 O7 P' 332.187
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 C5P 1 1 1 C5P C A . n
A 1 2 U 2 2 2 U U A . n
A 1 3 G 3 3 3 G G A . n
A 1 4 C 4 4 4 C C A . n
A 1 5 U 5 5 5 U U A . n
A 1 6 G 6 6 6 G G A . n
A 1 7 G 7 7 7 G G A . n
A 1 8 C 8 8 8 C C A . n
A 1 9 U 9 9 9 U U A . n
A 1 10 A 10 10 10 A A A . n
A 1 11 A 11 11 11 A A A . n
A 1 12 G 12 12 12 G G A . n
A 1 13 G 13 13 13 G G A . n
A 1 14 TG 14 14 14 TG TFG A . n
A 1 15 C 15 15 15 C C A . n
A 1 16 C 16 16 16 C C A . n
A 1 17 G 17 17 17 G G A . n
A 1 18 A 18 18 18 A A A . n
A 1 19 A 19 19 19 A A A . n
A 1 20 A 20 20 20 A A A . n
A 1 21 G 21 21 21 G G A . n
A 1 22 G 22 22 22 G G A . n
B 2 1 C 1 1 1 C C B . n
B 2 2 U 2 2 2 U U B . n
B 2 3 A 3 3 3 A A B . n
B 2 4 U 4 4 4 U U B . n
B 2 5 G 5 5 5 G G B . n
B 2 6 C 6 6 6 C C B . n
B 2 7 C 7 7 7 C C B . n
B 2 8 U 8 8 8 U U B . n
B 2 9 G 9 9 9 G G B . n
B 2 10 C 10 10 10 C C B . n
B 2 11 U 11 11 11 U U B . n
B 2 12 G 12 12 12 G G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 C5P 1 101 1 C5P C A .
D 4 HOH 1 101 1 HOH HOH B .
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag Y
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id A
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id C5P
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id O3P
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id A
_pdbx_unobs_or_zero_occ_atoms.label_comp_id C5P
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 1
_pdbx_unobs_or_zero_occ_atoms.label_atom_id O3P
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 6U7Y
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 68.766
_cell.length_a_esd ?
_cell.length_b 68.766
_cell.length_b_esd ?
_cell.length_c 69.960
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 9
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6U7Y
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 146
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'H 3'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6U7Y
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.90
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 57.58
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.2 M Lithium sulfate monohydrate, 0.1 M HEPES pH 7.5, 25% w/v Polyethylene glycol 3,350'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 99
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'MAR CCD 130 mm'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2019-08-15
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'ALS BEAMLINE 8.2.2'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 8.2.2
_diffrn_source.pdbx_synchrotron_site ALS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 6U7Y
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.95
_reflns.d_resolution_low 50
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 2599
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 98.5
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 6.0
_reflns.pdbx_Rmerge_I_obs 0.116
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 10.3
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.149
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.141
_reflns.pdbx_Rpim_I_all 0.079
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 1.0
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 2.95
_reflns_shell.d_res_low 3.06
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 1.83
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 263
_reflns_shell.percent_possible_all 89.6
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.332
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 4.5
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared 1.15
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all 0.413
_reflns_shell.pdbx_Rpim_I_all 0.243
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half 0.956
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 0.06
_refine.aniso_B[1][2] 0.03
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][2] 0.06
_refine.aniso_B[2][3] 0.00
_refine.aniso_B[3][3] -0.19
_refine.B_iso_max ?
_refine.B_iso_mean 62.634
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6U7Y
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.95
_refine.ls_d_res_low 45.35
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 2463
_refine.ls_number_reflns_R_free 136
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.27
_refine.ls_percent_reflns_R_free 5.2
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.186
_refine.ls_R_factor_R_free 0.256
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.182
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 5VCI
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details random
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0
_refine.pdbx_overall_ESU_R_Free 0.422
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.419
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 720
_refine_hist.pdbx_number_atoms_ligand 21
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 742
_refine_hist.d_res_high 2.95
_refine_hist.d_res_low 45.35
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.95
_refine_ls_shell.d_res_low 3.02
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 15
_refine_ls_shell.number_reflns_R_work 171
_refine_ls_shell.percent_reflns_obs 93
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.380
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.405
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_database_PDB_matrix.entry_id 6U7Y
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 6U7Y
_struct.title 'RNA hairpin structure containing one TNA nucleotide as template'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6U7Y
_struct_keywords.text RNA
_struct_keywords.pdbx_keywords RNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 6U7Y 6U7Y ? 1 ? 1
2 PDB 6U7Y 6U7Y ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6U7Y A 1 ? 22 ? 6U7Y 1 ? 22 ? 1 22
2 2 6U7Y B 1 ? 12 ? 6U7Y 1 ? 12 ? 1 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1530 ?
1 MORE -5 ?
1 'SSA (A^2)' 6130 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? A C5P 1 "O3'" ? ? ? 1_555 A U 2 P ? ? A C5P 1 A U 2 1_555 ? ? ? ? ? ? ? 1.552 ? ?
covale2 covale both ? A G 13 "O3'" ? ? ? 1_555 A TG 14 P ? ? A G 13 A TG 14 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale3 covale one ? A TG 14 "O2'" ? ? ? 1_555 A C 15 P ? ? A TG 14 A C 15 1_555 ? ? ? ? ? ? ? 1.665 ? ?
hydrog1 hydrog ? ? A U 2 N3 ? ? ? 1_555 B U 11 O2 ? ? A U 2 B U 11 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog2 hydrog ? ? A U 2 O4 ? ? ? 1_555 B U 11 N3 ? ? A U 2 B U 11 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog3 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 B U 8 N3 ? ? A U 5 B U 8 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ?
hydrog10 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 8 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 8 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 8 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 3 N7 ? ? A U 9 B A 3 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog20 hydrog ? ? A U 9 O2 ? ? ? 1_555 B A 3 N6 ? ? A U 9 B A 3 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 11 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 11 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 B U 2 O2 ? ? A G 12 B U 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 B U 2 N3 ? ? A G 12 B U 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B U 4 O4 ? ? A G 12 B U 4 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ?
hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 13 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 13 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 13 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 15 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 15 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 15 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 16 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 16 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 16 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 20 N7 ? ? A G 17 A A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id C5P
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 4
_struct_site.details 'binding site for residue C5P A 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 TG A 14 ? TG A 14 . ? 1_555 ?
2 AC1 4 C A 15 ? C A 15 . ? 1_555 ?
3 AC1 4 G A 22 ? G A 22 . ? 1_555 ?
4 AC1 4 C B 1 ? C B 1 . ? 1_555 ?
#
_pdbx_entry_details.entry_id 6U7Y
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
C5P O3P O N N 73
C5P P P N N 74
C5P O1P O N N 75
C5P O2P O N N 76
C5P "O5'" O N N 77
C5P "C5'" C N N 78
C5P "C4'" C N R 79
C5P "O4'" O N N 80
C5P "C3'" C N S 81
C5P "O3'" O N N 82
C5P "C2'" C N R 83
C5P "O2'" O N N 84
C5P "C1'" C N R 85
C5P N1 N N N 86
C5P C2 C N N 87
C5P N3 N N N 88
C5P C4 C N N 89
C5P C5 C N N 90
C5P C6 C N N 91
C5P O2 O N N 92
C5P N4 N N N 93
C5P HOP3 H N N 94
C5P HOP2 H N N 95
C5P "H5'1" H N N 96
C5P "H5'2" H N N 97
C5P "H4'" H N N 98
C5P "H3'" H N N 99
C5P "HO3'" H N N 100
C5P "H2'1" H N N 101
C5P "HO2'" H N N 102
C5P "H1'" H N N 103
C5P H5 H N N 104
C5P H6 H N N 105
C5P HN41 H N N 106
C5P HN42 H N N 107
G OP3 O N N 108
G P P N N 109
G OP1 O N N 110
G OP2 O N N 111
G "O5'" O N N 112
G "C5'" C N N 113
G "C4'" C N R 114
G "O4'" O N N 115
G "C3'" C N S 116
G "O3'" O N N 117
G "C2'" C N R 118
G "O2'" O N N 119
G "C1'" C N R 120
G N9 N Y N 121
G C8 C Y N 122
G N7 N Y N 123
G C5 C Y N 124
G C6 C N N 125
G O6 O N N 126
G N1 N N N 127
G C2 C N N 128
G N2 N N N 129
G N3 N N N 130
G C4 C Y N 131
G HOP3 H N N 132
G HOP2 H N N 133
G "H5'" H N N 134
G "H5''" H N N 135
G "H4'" H N N 136
G "H3'" H N N 137
G "HO3'" H N N 138
G "H2'" H N N 139
G "HO2'" H N N 140
G "H1'" H N N 141
G H8 H N N 142
G H1 H N N 143
G H21 H N N 144
G H22 H N N 145
HOH O O N N 146
HOH H1 H N N 147
HOH H2 H N N 148
TG "C1'" C N R 149
TG C2 C N N 150
TG "C2'" C N R 151
TG "C3'" C N S 152
TG C4 C Y N 153
TG "C4'" C N N 154
TG C5 C Y N 155
TG C6 C N N 156
TG C8 C Y N 157
TG N1 N N N 158
TG N2 N N N 159
TG N3 N N N 160
TG N7 N Y N 161
TG N9 N Y N 162
TG O1P O N N 163
TG "O2'" O N N 164
TG O2P O N N 165
TG "O3'" O N N 166
TG "O4'" O N N 167
TG O6 O N N 168
TG P P N N 169
TG H1 H N N 170
TG H2 H N N 171
TG H3 H N N 172
TG H4 H N N 173
TG H5 H N N 174
TG H6 H N N 175
TG H7 H N N 176
TG H8 H N N 177
TG H9 H N N 178
TG H11 H N N 179
TG O3P O N N 180
TG H10 H N N 181
U OP3 O N N 182
U P P N N 183
U OP1 O N N 184
U OP2 O N N 185
U "O5'" O N N 186
U "C5'" C N N 187
U "C4'" C N R 188
U "O4'" O N N 189
U "C3'" C N S 190
U "O3'" O N N 191
U "C2'" C N R 192
U "O2'" O N N 193
U "C1'" C N R 194
U N1 N N N 195
U C2 C N N 196
U O2 O N N 197
U N3 N N N 198
U C4 C N N 199
U O4 O N N 200
U C5 C N N 201
U C6 C N N 202
U HOP3 H N N 203
U HOP2 H N N 204
U "H5'" H N N 205
U "H5''" H N N 206
U "H4'" H N N 207
U "H3'" H N N 208
U "HO3'" H N N 209
U "H2'" H N N 210
U "HO2'" H N N 211
U "H1'" H N N 212
U H3 H N N 213
U H5 H N N 214
U H6 H N N 215
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
C OP3 P sing N N 40
C OP3 HOP3 sing N N 41
C P OP1 doub N N 42
C P OP2 sing N N 43
C P "O5'" sing N N 44
C OP2 HOP2 sing N N 45
C "O5'" "C5'" sing N N 46
C "C5'" "C4'" sing N N 47
C "C5'" "H5'" sing N N 48
C "C5'" "H5''" sing N N 49
C "C4'" "O4'" sing N N 50
C "C4'" "C3'" sing N N 51
C "C4'" "H4'" sing N N 52
C "O4'" "C1'" sing N N 53
C "C3'" "O3'" sing N N 54
C "C3'" "C2'" sing N N 55
C "C3'" "H3'" sing N N 56
C "O3'" "HO3'" sing N N 57
C "C2'" "O2'" sing N N 58
C "C2'" "C1'" sing N N 59
C "C2'" "H2'" sing N N 60
C "O2'" "HO2'" sing N N 61
C "C1'" N1 sing N N 62
C "C1'" "H1'" sing N N 63
C N1 C2 sing N N 64
C N1 C6 sing N N 65
C C2 O2 doub N N 66
C C2 N3 sing N N 67
C N3 C4 doub N N 68
C C4 N4 sing N N 69
C C4 C5 sing N N 70
C N4 H41 sing N N 71
C N4 H42 sing N N 72
C C5 C6 doub N N 73
C C5 H5 sing N N 74
C C6 H6 sing N N 75
C5P O3P P sing N N 76
C5P O3P HOP3 sing N N 77
C5P P O1P doub N N 78
C5P P O2P sing N N 79
C5P P "O5'" sing N N 80
C5P O2P HOP2 sing N N 81
C5P "O5'" "C5'" sing N N 82
C5P "C5'" "C4'" sing N N 83
C5P "C5'" "H5'1" sing N N 84
C5P "C5'" "H5'2" sing N N 85
C5P "C4'" "O4'" sing N N 86
C5P "C4'" "C3'" sing N N 87
C5P "C4'" "H4'" sing N N 88
C5P "O4'" "C1'" sing N N 89
C5P "C3'" "O3'" sing N N 90
C5P "C3'" "C2'" sing N N 91
C5P "C3'" "H3'" sing N N 92
C5P "O3'" "HO3'" sing N N 93
C5P "C2'" "O2'" sing N N 94
C5P "C2'" "C1'" sing N N 95
C5P "C2'" "H2'1" sing N N 96
C5P "O2'" "HO2'" sing N N 97
C5P "C1'" N1 sing N N 98
C5P "C1'" "H1'" sing N N 99
C5P N1 C2 sing N N 100
C5P N1 C6 sing N N 101
C5P C2 N3 sing N N 102
C5P C2 O2 doub N N 103
C5P N3 C4 doub N N 104
C5P C4 C5 sing N N 105
C5P C4 N4 sing N N 106
C5P C5 C6 doub N N 107
C5P C5 H5 sing N N 108
C5P C6 H6 sing N N 109
C5P N4 HN41 sing N N 110
C5P N4 HN42 sing N N 111
G OP3 P sing N N 112
G OP3 HOP3 sing N N 113
G P OP1 doub N N 114
G P OP2 sing N N 115
G P "O5'" sing N N 116
G OP2 HOP2 sing N N 117
G "O5'" "C5'" sing N N 118
G "C5'" "C4'" sing N N 119
G "C5'" "H5'" sing N N 120
G "C5'" "H5''" sing N N 121
G "C4'" "O4'" sing N N 122
G "C4'" "C3'" sing N N 123
G "C4'" "H4'" sing N N 124
G "O4'" "C1'" sing N N 125
G "C3'" "O3'" sing N N 126
G "C3'" "C2'" sing N N 127
G "C3'" "H3'" sing N N 128
G "O3'" "HO3'" sing N N 129
G "C2'" "O2'" sing N N 130
G "C2'" "C1'" sing N N 131
G "C2'" "H2'" sing N N 132
G "O2'" "HO2'" sing N N 133
G "C1'" N9 sing N N 134
G "C1'" "H1'" sing N N 135
G N9 C8 sing Y N 136
G N9 C4 sing Y N 137
G C8 N7 doub Y N 138
G C8 H8 sing N N 139
G N7 C5 sing Y N 140
G C5 C6 sing N N 141
G C5 C4 doub Y N 142
G C6 O6 doub N N 143
G C6 N1 sing N N 144
G N1 C2 sing N N 145
G N1 H1 sing N N 146
G C2 N2 sing N N 147
G C2 N3 doub N N 148
G N2 H21 sing N N 149
G N2 H22 sing N N 150
G N3 C4 sing N N 151
HOH O H1 sing N N 152
HOH O H2 sing N N 153
TG N2 C2 sing N N 154
TG N1 C2 sing N N 155
TG N1 C6 sing N N 156
TG O6 C6 doub N N 157
TG C2 N3 doub N N 158
TG C6 C5 sing N N 159
TG N3 C4 sing N N 160
TG C5 C4 doub Y N 161
TG C5 N7 sing Y N 162
TG C4 N9 sing Y N 163
TG N7 C8 doub Y N 164
TG N9 C8 sing Y N 165
TG N9 "C1'" sing N N 166
TG "C1'" "O4'" sing N N 167
TG "C1'" "C2'" sing N N 168
TG "O4'" "C4'" sing N N 169
TG "C2'" "O2'" sing N N 170
TG "C2'" "C3'" sing N N 171
TG "C4'" "C3'" sing N N 172
TG "C3'" "O3'" sing N N 173
TG "O3'" P sing N N 174
TG P O1P doub N N 175
TG P O2P doub N N 176
TG "C1'" H1 sing N N 177
TG "C2'" H2 sing N N 178
TG "C3'" H3 sing N N 179
TG "C4'" H4 sing N N 180
TG "C4'" H5 sing N N 181
TG C8 H6 sing N N 182
TG N1 H7 sing N N 183
TG N2 H8 sing N N 184
TG N2 H9 sing N N 185
TG "O2'" H11 sing N N 186
TG P O3P sing N N 187
TG O3P H10 sing N N 188
U OP3 P sing N N 189
U OP3 HOP3 sing N N 190
U P OP1 doub N N 191
U P OP2 sing N N 192
U P "O5'" sing N N 193
U OP2 HOP2 sing N N 194
U "O5'" "C5'" sing N N 195
U "C5'" "C4'" sing N N 196
U "C5'" "H5'" sing N N 197
U "C5'" "H5''" sing N N 198
U "C4'" "O4'" sing N N 199
U "C4'" "C3'" sing N N 200
U "C4'" "H4'" sing N N 201
U "O4'" "C1'" sing N N 202
U "C3'" "O3'" sing N N 203
U "C3'" "C2'" sing N N 204
U "C3'" "H3'" sing N N 205
U "O3'" "HO3'" sing N N 206
U "C2'" "O2'" sing N N 207
U "C2'" "C1'" sing N N 208
U "C2'" "H2'" sing N N 209
U "O2'" "HO2'" sing N N 210
U "C1'" N1 sing N N 211
U "C1'" "H1'" sing N N 212
U N1 C2 sing N N 213
U N1 C6 sing N N 214
U C2 O2 doub N N 215
U C2 N3 sing N N 216
U N3 C4 sing N N 217
U N3 H3 sing N N 218
U C4 O4 doub N N 219
U C4 C5 sing N N 220
U C5 C6 doub N N 221
U C5 H5 sing N N 222
U C6 H6 sing N N 223
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
6U7Y 'double helix'
6U7Y 'a-form double helix'
6U7Y tetraloop
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A U 2 1_555 B U 11 1_555 -1.856 -1.658 0.686 -6.010 -10.242 11.351 1 A_U2:U11_B A 2 ? B 11 ? 16 1
1 A G 3 1_555 B C 10 1_555 0.012 -0.047 0.606 4.293 -21.898 7.469 2 A_G3:C10_B A 3 ? B 10 ? 19 1
1 A C 4 1_555 B G 9 1_555 -0.051 -0.236 0.749 -1.494 -26.070 -3.358 3 A_C4:G9_B A 4 ? B 9 ? 19 1
1 A U 5 1_555 B U 8 1_555 -2.874 -1.398 -0.412 16.137 -17.222 -23.194 4 A_U5:U8_B A 5 ? B 8 ? ? ?
1 A G 6 1_555 B C 7 1_555 -0.218 -0.122 0.206 0.806 -0.143 2.420 5 A_G6:C7_B A 6 ? B 7 ? 19 1
1 A G 7 1_555 B C 6 1_555 0.027 -0.040 -0.597 -11.952 -11.591 1.512 6 A_G7:C6_B A 7 ? B 6 ? 19 1
1 A C 8 1_555 B G 5 1_555 0.214 -0.360 0.188 -1.162 -4.214 -5.727 7 A_C8:G5_B A 8 ? B 5 ? 19 1
1 B A 3 1_555 A U 9 1_555 -4.249 -2.480 -1.241 10.493 -4.191 -84.484 8 B_A3:U9_A B 3 ? A 9 ? 24 4
1 A A 11 1_555 B U 4 1_555 0.128 -0.115 -0.328 -18.107 18.319 -6.135 9 A_A11:U4_B A 11 ? B 4 ? 20 1
1 A G 12 1_555 B U 2 1_555 -2.300 -0.625 -0.090 -3.156 -16.830 -1.006 10 A_G12:U2_B A 12 ? B 2 ? 28 1
1 A G 13 1_555 B C 1 1_555 0.175 -0.051 0.119 -3.572 -9.298 -3.806 11 A_G13:C1_B A 13 ? B 1 ? 19 1
1 A C 15 1_555 A G 22 1_555 0.253 -0.130 -0.199 3.266 -18.539 1.374 12 A_C15:G22_A A 15 ? A 22 ? 19 1
1 A C 16 1_555 A G 21 1_555 0.472 -0.352 0.154 0.697 1.735 1.127 13 A_C16:G21_A A 16 ? A 21 ? 19 1
1 A G 17 1_555 A A 20 1_555 7.210 -5.157 1.116 16.535 -2.153 -11.456 14 A_G17:A20_A A 17 ? A 20 ? ? ?
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A U 2 1_555 B U 11 1_555 A G 3 1_555 B C 10 1_555 -0.233 -0.586 3.059 2.383 5.142 45.860 -1.152 0.484 2.965 6.568
-3.044 46.190 1 AA_U2G3:C10U11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A G 3 1_555 B C 10 1_555 A C 4 1_555 B G 9 1_555 -0.480 -1.689 3.312 0.184 2.769 29.035 -3.950 0.993 3.138 5.507
-0.367 29.164 2 AA_G3C4:G9C10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A C 4 1_555 B G 9 1_555 A U 5 1_555 B U 8 1_555 -0.482 -2.098 2.481 4.150 15.148 19.217 -7.321 1.790 0.580 38.162
-10.455 24.773 3 AA_C4U5:U8G9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A U 5 1_555 B U 8 1_555 A G 6 1_555 B C 7 1_555 1.607 -1.676 3.695 -4.999 2.643 42.609 -2.572 -2.733 3.389 3.617
6.843 42.965 4 AA_U5G6:C7U8_BB A 5 ? B 8 ? A 6 ? B 7 ?
1 A G 6 1_555 B C 7 1_555 A G 7 1_555 B C 6 1_555 0.587 -1.592 3.577 5.154 13.329 35.623 -4.141 -0.232 2.876 20.785
-8.037 38.296 5 AA_G6G7:C6C7_BB A 6 ? B 7 ? A 7 ? B 6 ?
1 A G 7 1_555 B C 6 1_555 A C 8 1_555 B G 5 1_555 -1.339 -2.571 3.035 -8.532 -3.382 30.206 -4.084 0.833 3.533 -6.310
15.917 31.538 6 AA_G7C8:G5C6_BB A 7 ? B 6 ? A 8 ? B 5 ?
1 A C 8 1_555 B G 5 1_555 B A 3 1_555 A U 9 1_555 -0.087 -4.233 -1.668 -132.683 -99.477 13.808 -1.940 -0.213 2.388 -53.475
71.324 165.936 7 AB_C8A3:U9G5_AB A 8 ? B 5 ? B 3 ? A 9 ?
1 B A 3 1_555 A U 9 1_555 A A 11 1_555 B U 4 1_555 -2.427 3.971 2.219 -153.882 -17.298 64.860 2.176 -0.158 2.860 -9.292
82.658 158.823 8 BA_A3A11:U4U9_BA B 3 ? A 9 ? A 11 ? B 4 ?
1 A A 11 1_555 B U 4 1_555 A G 12 1_555 B U 2 1_555 4.618 -0.413 2.910 -6.727 28.931 61.246 -1.282 -4.371 2.095 26.785
6.228 67.434 9 AA_A11G12:U2U4_BB A 11 ? B 4 ? A 12 ? B 2 ?
1 A G 12 1_555 B U 2 1_555 A G 13 1_555 B C 1 1_555 0.095 -1.443 3.218 -5.026 6.461 38.468 -2.874 -0.707 2.912 9.674
7.524 39.297 10 AA_G12G13:C1U2_BB A 12 ? B 2 ? A 13 ? B 1 ?
1 A G 13 1_555 B C 1 1_555 A C 15 1_555 A G 22 1_555 0.150 -2.872 6.191 3.220 5.393 62.112 -3.229 0.128 5.949 5.213
-3.113 62.397 11 AA_G13C15:G22C1_AB A 13 ? B 1 ? A 15 ? A 22 ?
1 A C 15 1_555 A G 22 1_555 A C 16 1_555 A G 21 1_555 -0.111 -1.970 3.325 -2.062 12.882 29.519 -5.613 -0.131 2.290 23.867
3.821 32.214 12 AA_C15C16:G21G22_AA A 15 ? A 22 ? A 16 ? A 21 ?
1 A C 16 1_555 A G 21 1_555 A G 17 1_555 A A 20 1_555 -1.365 -0.994 2.832 -2.147 10.462 54.224 -1.597 1.366 2.661 11.354
2.330 55.188 13 AA_C16G17:A20G21_AA A 16 ? A 21 ? A 17 ? A 20 ?
#
_pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number ?
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id TG
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id TG
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 5VCI
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 6U7Y
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.014542
_atom_sites.fract_transf_matrix[1][2] 0.008396
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016792
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.014294
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_