HEADER TRANSCRIPTION/INHIBITOR 05-SEP-19 6U8M TITLE BRD4-BD1 IN COMPLEX WITH THE CYCLIC PEPTIDE 3.2_1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN HUNK1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIC PEPTIDE 3.2_1; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS BET, BROMODOMAIN, MACROCYCLIC PEPTIDE, BRD4, INHIBITOR, RAPID, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.PATEL,J.L.WALSHE,L.J.WALPORT,J.P.MACKAY REVDAT 4 15-NOV-23 6U8M 1 REMARK REVDAT 3 11-OCT-23 6U8M 1 REMARK REVDAT 2 03-MAR-21 6U8M 1 JRNL REVDAT 1 19-AUG-20 6U8M 0 JRNL AUTH K.PATEL,L.J.WALPORT,J.L.WALSHE,P.D.SOLOMON,J.K.K.LOW, JRNL AUTH 2 D.H.TRAN,K.S.MOURADIAN,A.P.G.SILVA,L.WILKINSON-WHITE, JRNL AUTH 3 A.NORMAN,C.FRANCK,J.M.MATTHEWS,J.M.GUSS,R.J.PAYNE, JRNL AUTH 4 T.PASSIOURA,H.SUGA,J.P.MACKAY JRNL TITL CYCLIC PEPTIDES CAN ENGAGE A SINGLE BINDING POCKET THROUGH JRNL TITL 2 HIGHLY DIVERGENT MODES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 26728 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33046654 JRNL DOI 10.1073/PNAS.2003086117 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0200 - 4.3300 1.00 2643 149 0.1527 0.1739 REMARK 3 2 4.3300 - 3.4400 1.00 2537 126 0.1542 0.1577 REMARK 3 3 3.4400 - 3.0100 1.00 2521 148 0.1903 0.2470 REMARK 3 4 3.0100 - 2.7300 1.00 2485 131 0.1902 0.2232 REMARK 3 5 2.7300 - 2.5400 1.00 2491 131 0.1887 0.2436 REMARK 3 6 2.5400 - 2.3900 1.00 2461 125 0.1785 0.2118 REMARK 3 7 2.3900 - 2.2700 1.00 2477 137 0.1782 0.2078 REMARK 3 8 2.2700 - 2.1700 1.00 2445 144 0.1735 0.2262 REMARK 3 9 2.1700 - 2.0800 1.00 2453 132 0.1751 0.2292 REMARK 3 10 2.0800 - 2.0100 1.00 2454 125 0.1817 0.2206 REMARK 3 11 2.0100 - 1.9500 1.00 2438 145 0.1847 0.2284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.129 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2179 REMARK 3 ANGLE : 0.912 2956 REMARK 3 CHIRALITY : 0.054 320 REMARK 3 PLANARITY : 0.005 374 REMARK 3 DIHEDRAL : 10.854 1326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9466 -15.6247 14.3214 REMARK 3 T TENSOR REMARK 3 T11: 0.3620 T22: 0.7666 REMARK 3 T33: 0.4782 T12: -0.0350 REMARK 3 T13: 0.0063 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0158 L22: 0.2983 REMARK 3 L33: 0.2315 L12: 0.0105 REMARK 3 L13: 0.0104 L23: 0.1252 REMARK 3 S TENSOR REMARK 3 S11: -0.5058 S12: 0.0668 S13: -0.7585 REMARK 3 S21: -0.1361 S22: 0.7231 S23: 0.4927 REMARK 3 S31: -0.3425 S32: -0.0853 S33: 0.0046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2382 -16.9778 25.8494 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.6997 REMARK 3 T33: 0.4336 T12: -0.0046 REMARK 3 T13: -0.0034 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0337 L22: 0.0308 REMARK 3 L33: 0.0654 L12: 0.0058 REMARK 3 L13: -0.0273 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: -0.3423 S13: 0.2421 REMARK 3 S21: 0.3644 S22: -0.2530 S23: -0.8333 REMARK 3 S31: 0.5806 S32: 0.3182 S33: 0.0016 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7043 -16.5472 37.5541 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.5368 REMARK 3 T33: 0.4214 T12: 0.0091 REMARK 3 T13: -0.0258 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.0601 L22: 0.0539 REMARK 3 L33: 0.1390 L12: -0.0223 REMARK 3 L13: 0.0853 L23: 0.0407 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: 0.4701 S13: -0.2670 REMARK 3 S21: -0.1254 S22: 0.0442 S23: -0.3611 REMARK 3 S31: 0.3717 S32: 0.6345 S33: 0.0052 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3800 -23.5669 24.0526 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.3835 REMARK 3 T33: 0.3165 T12: -0.0075 REMARK 3 T13: 0.0711 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.1072 L22: 0.5317 REMARK 3 L33: 0.3984 L12: 0.2767 REMARK 3 L13: -0.2391 L23: -0.4828 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.3163 S13: 0.0090 REMARK 3 S21: 0.1084 S22: -0.1869 S23: -0.1890 REMARK 3 S31: 0.4923 S32: -0.6450 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0098 -20.7762 8.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.3677 T22: 0.3279 REMARK 3 T33: 0.3482 T12: 0.0342 REMARK 3 T13: 0.0728 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.2677 L22: 0.2503 REMARK 3 L33: 1.3098 L12: -0.0855 REMARK 3 L13: -0.3473 L23: 0.4813 REMARK 3 S TENSOR REMARK 3 S11: -0.2852 S12: -0.1861 S13: -0.4295 REMARK 3 S21: -0.4832 S22: -0.0095 S23: -0.4261 REMARK 3 S31: 0.2542 S32: 0.3719 S33: -0.0123 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6625 -15.2836 22.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.3606 REMARK 3 T33: 0.3241 T12: 0.0282 REMARK 3 T13: -0.0253 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6451 L22: 0.5338 REMARK 3 L33: 0.8000 L12: 0.0067 REMARK 3 L13: -0.5229 L23: 0.4169 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.3607 S13: -0.0560 REMARK 3 S21: 0.1558 S22: -0.1460 S23: -0.2015 REMARK 3 S31: 0.0338 S32: 0.5269 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6617 -11.6254 16.7647 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.3002 REMARK 3 T33: 0.3295 T12: 0.0249 REMARK 3 T13: 0.0024 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7150 L22: 0.4865 REMARK 3 L33: 0.4472 L12: 0.1902 REMARK 3 L13: 0.0790 L23: -0.4799 REMARK 3 S TENSOR REMARK 3 S11: 0.1809 S12: -0.1291 S13: 0.1405 REMARK 3 S21: 0.0747 S22: -0.1344 S23: 0.0919 REMARK 3 S31: -0.5402 S32: -0.1957 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9099 -11.6041 0.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.4019 T22: 0.3721 REMARK 3 T33: 0.4075 T12: 0.0362 REMARK 3 T13: -0.0744 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.0066 L22: 0.0475 REMARK 3 L33: 0.0715 L12: 0.0223 REMARK 3 L13: -0.0151 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.2123 S12: 0.2744 S13: -0.3574 REMARK 3 S21: -0.9275 S22: 0.1204 S23: 0.1790 REMARK 3 S31: 0.1641 S32: 0.4082 S33: -0.0009 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6530 -17.0191 14.2101 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.3887 REMARK 3 T33: 0.3784 T12: 0.0112 REMARK 3 T13: -0.0325 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.2975 L22: 1.3198 REMARK 3 L33: 0.9698 L12: -0.5647 REMARK 3 L13: 0.1793 L23: -1.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.2026 S13: 0.0583 REMARK 3 S21: -0.2791 S22: 0.2152 S23: 0.4210 REMARK 3 S31: 0.1255 S32: -0.7298 S33: 0.0070 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4028 0.0132 5.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.3489 T22: 0.2721 REMARK 3 T33: 0.4433 T12: 0.0364 REMARK 3 T13: -0.0670 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 0.2300 L22: 0.1954 REMARK 3 L33: 0.5892 L12: 0.1043 REMARK 3 L13: 0.0782 L23: 0.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: 0.1215 S13: 0.3577 REMARK 3 S21: 0.1310 S22: -0.3878 S23: -0.8594 REMARK 3 S31: -0.2715 S32: 0.2893 S33: -0.0546 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.3016 -0.9036 0.2915 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.2486 REMARK 3 T33: 0.3320 T12: 0.0054 REMARK 3 T13: -0.0799 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.7480 L22: 0.8397 REMARK 3 L33: 0.6772 L12: -0.1948 REMARK 3 L13: -0.4334 L23: 0.7409 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: 0.2362 S13: -0.2246 REMARK 3 S21: -0.2238 S22: -0.1861 S23: 0.2260 REMARK 3 S31: 0.2570 S32: -0.0076 S33: -0.0384 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4049 12.3202 -1.8519 REMARK 3 T TENSOR REMARK 3 T11: 0.3452 T22: 0.2909 REMARK 3 T33: 0.3302 T12: 0.0359 REMARK 3 T13: -0.0102 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 0.2238 L22: 0.1515 REMARK 3 L33: 0.1006 L12: 0.1885 REMARK 3 L13: 0.1889 L23: 0.1648 REMARK 3 S TENSOR REMARK 3 S11: 0.1212 S12: 0.2393 S13: 0.4041 REMARK 3 S21: -0.2497 S22: -0.1140 S23: -0.1485 REMARK 3 S31: -0.0539 S32: 0.1288 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3724 4.8012 -2.5709 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.3109 REMARK 3 T33: 0.2980 T12: 0.0388 REMARK 3 T13: 0.0449 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.4227 L22: 0.2488 REMARK 3 L33: 0.4703 L12: 0.0945 REMARK 3 L13: -0.3819 L23: -0.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: 0.2728 S13: -0.0904 REMARK 3 S21: -0.4241 S22: -0.0204 S23: -0.3574 REMARK 3 S31: -0.0042 S32: 0.2006 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5994 8.8402 5.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.2753 REMARK 3 T33: 0.2900 T12: 0.0117 REMARK 3 T13: 0.0011 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.2516 L22: 0.8700 REMARK 3 L33: 1.0703 L12: -0.2201 REMARK 3 L13: -0.3417 L23: -0.3672 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.1688 S13: 0.4702 REMARK 3 S21: -0.0296 S22: -0.0432 S23: -0.0117 REMARK 3 S31: -0.1074 S32: -0.0219 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8943 1.6610 12.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.3691 T22: 0.3405 REMARK 3 T33: 0.2418 T12: -0.0216 REMARK 3 T13: -0.0282 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.0240 L22: 0.8863 REMARK 3 L33: 0.8938 L12: -0.7642 REMARK 3 L13: -0.4906 L23: -0.1186 REMARK 3 S TENSOR REMARK 3 S11: -0.1260 S12: -0.5935 S13: -0.0712 REMARK 3 S21: 0.4087 S22: 0.1380 S23: 0.1869 REMARK 3 S31: 0.0600 S32: -0.0991 S33: -0.0326 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0776 -6.1641 -2.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.4040 T22: 0.3013 REMARK 3 T33: 0.4997 T12: -0.0301 REMARK 3 T13: -0.0609 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.0641 L22: 0.0733 REMARK 3 L33: 0.1000 L12: 0.0385 REMARK 3 L13: 0.1045 L23: 0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.1943 S12: 0.1009 S13: -0.4003 REMARK 3 S21: 0.4835 S22: -0.1812 S23: 0.9069 REMARK 3 S31: 0.3537 S32: -0.0860 S33: -0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6374 -8.5872 -0.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.3272 T22: 0.3311 REMARK 3 T33: 0.4689 T12: -0.0201 REMARK 3 T13: -0.0998 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.1455 L22: 2.7505 REMARK 3 L33: 2.0316 L12: -1.7130 REMARK 3 L13: -1.5428 L23: 2.2567 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: -0.1671 S13: -0.0431 REMARK 3 S21: 1.0684 S22: -0.3147 S23: 0.5400 REMARK 3 S31: 0.4958 S32: -0.4030 S33: -0.2671 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 60 OR RESID 62 REMARK 3 THROUGH 63 OR RESID 65 THROUGH 67 OR REMARK 3 RESID 69 THROUGH 75 OR RESID 77 THROUGH REMARK 3 111 OR RESID 113 THROUGH 116 OR (RESID REMARK 3 117 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 119 THROUGH REMARK 3 122 OR RESID 124 THROUGH 166)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 60 OR RESID 62 REMARK 3 THROUGH 63 OR RESID 65 THROUGH 67 OR REMARK 3 RESID 69 THROUGH 75 OR RESID 77 THROUGH REMARK 3 111 OR RESID 113 THROUGH 116 OR (RESID REMARK 3 117 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 119 THROUGH REMARK 3 122 OR RESID 124 THROUGH 166)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V 1,4-DIOXANE, 0.1 M TRIS PH 8.0, REMARK 280 15% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.91700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.02800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.02800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.91700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 36 REMARK 465 GLY A 37 REMARK 465 PRO A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 SER A 41 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 PRO A 169 REMARK 465 GLU A 170 REMARK 465 PHE A 171 REMARK 465 PRO A 172 REMARK 465 GLY A 173 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 GLU A 176 REMARK 465 ARG A 177 REMARK 465 PRO A 178 REMARK 465 HIS A 179 REMARK 465 ARG A 180 REMARK 465 ASP A 181 REMARK 465 GLN B 36 REMARK 465 GLY B 37 REMARK 465 PRO B 38 REMARK 465 LEU B 39 REMARK 465 GLY B 40 REMARK 465 SER B 41 REMARK 465 SER B 42 REMARK 465 THR B 43 REMARK 465 ASN B 44 REMARK 465 PRO B 45 REMARK 465 PRO B 46 REMARK 465 PRO B 47 REMARK 465 PRO B 48 REMARK 465 GLU B 49 REMARK 465 THR B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 PRO B 53 REMARK 465 ASN B 54 REMARK 465 LYS B 55 REMARK 465 PRO B 56 REMARK 465 LYS B 57 REMARK 465 GLU B 168 REMARK 465 PRO B 169 REMARK 465 GLU B 170 REMARK 465 PHE B 171 REMARK 465 PRO B 172 REMARK 465 GLY B 173 REMARK 465 ARG B 174 REMARK 465 LEU B 175 REMARK 465 GLU B 176 REMARK 465 ARG B 177 REMARK 465 PRO B 178 REMARK 465 HIS B 179 REMARK 465 ARG B 180 REMARK 465 ASP B 181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CYS C 17 N NH2 C 101 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 85.54 -161.56 REMARK 500 GLN A 59 99.62 68.75 REMARK 500 LEU A 94 74.65 -117.39 REMARK 500 ASN A 116 -158.50 -95.79 REMARK 500 LEU B 94 75.41 -115.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and TRP C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and CYS C 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TRP C 1 and ALY C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY C 2 and LYS C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY C 8 and ALY C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY C 9 and ILE C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NH2 C 101 and CYS C REMARK 800 17 DBREF 6U8M A 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 6U8M B 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 6U8M C 0 17 PDB 6U8M 6U8M 0 17 SEQADV 6U8M GLN A 36 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY A 37 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO A 38 UNP O60885 EXPRESSION TAG SEQADV 6U8M LEU A 39 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY A 40 UNP O60885 EXPRESSION TAG SEQADV 6U8M SER A 41 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO A 169 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLU A 170 UNP O60885 EXPRESSION TAG SEQADV 6U8M PHE A 171 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO A 172 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY A 173 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG A 174 UNP O60885 EXPRESSION TAG SEQADV 6U8M LEU A 175 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLU A 176 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG A 177 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO A 178 UNP O60885 EXPRESSION TAG SEQADV 6U8M HIS A 179 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG A 180 UNP O60885 EXPRESSION TAG SEQADV 6U8M ASP A 181 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLN B 36 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY B 37 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO B 38 UNP O60885 EXPRESSION TAG SEQADV 6U8M LEU B 39 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY B 40 UNP O60885 EXPRESSION TAG SEQADV 6U8M SER B 41 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO B 169 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLU B 170 UNP O60885 EXPRESSION TAG SEQADV 6U8M PHE B 171 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO B 172 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLY B 173 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG B 174 UNP O60885 EXPRESSION TAG SEQADV 6U8M LEU B 175 UNP O60885 EXPRESSION TAG SEQADV 6U8M GLU B 176 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG B 177 UNP O60885 EXPRESSION TAG SEQADV 6U8M PRO B 178 UNP O60885 EXPRESSION TAG SEQADV 6U8M HIS B 179 UNP O60885 EXPRESSION TAG SEQADV 6U8M ARG B 180 UNP O60885 EXPRESSION TAG SEQADV 6U8M ASP B 181 UNP O60885 EXPRESSION TAG SEQRES 1 A 146 GLN GLY PRO LEU GLY SER SER THR ASN PRO PRO PRO PRO SEQRES 2 A 146 GLU THR SER ASN PRO ASN LYS PRO LYS ARG GLN THR ASN SEQRES 3 A 146 GLN LEU GLN TYR LEU LEU ARG VAL VAL LEU LYS THR LEU SEQRES 4 A 146 TRP LYS HIS GLN PHE ALA TRP PRO PHE GLN GLN PRO VAL SEQRES 5 A 146 ASP ALA VAL LYS LEU ASN LEU PRO ASP TYR TYR LYS ILE SEQRES 6 A 146 ILE LYS THR PRO MET ASP MET GLY THR ILE LYS LYS ARG SEQRES 7 A 146 LEU GLU ASN ASN TYR TYR TRP ASN ALA GLN GLU CYS ILE SEQRES 8 A 146 GLN ASP PHE ASN THR MET PHE THR ASN CYS TYR ILE TYR SEQRES 9 A 146 ASN LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLU ALA SEQRES 10 A 146 LEU GLU LYS LEU PHE LEU GLN LYS ILE ASN GLU LEU PRO SEQRES 11 A 146 THR GLU GLU PRO GLU PHE PRO GLY ARG LEU GLU ARG PRO SEQRES 12 A 146 HIS ARG ASP SEQRES 1 B 146 GLN GLY PRO LEU GLY SER SER THR ASN PRO PRO PRO PRO SEQRES 2 B 146 GLU THR SER ASN PRO ASN LYS PRO LYS ARG GLN THR ASN SEQRES 3 B 146 GLN LEU GLN TYR LEU LEU ARG VAL VAL LEU LYS THR LEU SEQRES 4 B 146 TRP LYS HIS GLN PHE ALA TRP PRO PHE GLN GLN PRO VAL SEQRES 5 B 146 ASP ALA VAL LYS LEU ASN LEU PRO ASP TYR TYR LYS ILE SEQRES 6 B 146 ILE LYS THR PRO MET ASP MET GLY THR ILE LYS LYS ARG SEQRES 7 B 146 LEU GLU ASN ASN TYR TYR TRP ASN ALA GLN GLU CYS ILE SEQRES 8 B 146 GLN ASP PHE ASN THR MET PHE THR ASN CYS TYR ILE TYR SEQRES 9 B 146 ASN LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLU ALA SEQRES 10 B 146 LEU GLU LYS LEU PHE LEU GLN LYS ILE ASN GLU LEU PRO SEQRES 11 B 146 THR GLU GLU PRO GLU PHE PRO GLY ARG LEU GLU ARG PRO SEQRES 12 B 146 HIS ARG ASP SEQRES 1 C 18 ACE TRP ALY LYS ALA ILE LEU PRO GLY ALY ILE LEU LYS SEQRES 2 C 18 THR LEU HIS ILE CYS HET ACE C 0 3 HET ALY C 2 12 HET ALY C 9 12 HET NH2 C 101 1 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM NH2 AMINO GROUP FORMUL 3 ACE C2 H4 O FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 4 NH2 H2 N FORMUL 5 HOH *214(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 HIS A 77 1 9 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 HELIX 8 AA8 THR B 60 VAL B 69 1 10 HELIX 9 AA9 VAL B 69 LYS B 76 1 8 HELIX 10 AB1 ALA B 80 GLN B 84 5 5 HELIX 11 AB2 ASP B 96 ILE B 101 1 6 HELIX 12 AB3 ASP B 106 ASN B 116 1 11 HELIX 13 AB4 ASN B 121 ASN B 140 1 20 HELIX 14 AB5 ASP B 144 ASN B 162 1 19 SHEET 1 AA1 2 ALY C 2 LEU C 6 0 SHEET 2 AA1 2 ILE C 10 LEU C 14 -1 O ILE C 10 N LEU C 6 LINK C ACE C 0 N TRP C 1 1555 1555 1.33 LINK CH3 ACE C 0 SG CYS C 17 1555 1555 1.77 LINK C TRP C 1 N ALY C 2 1555 1555 1.33 LINK C ALY C 2 N LYS C 3 1555 1555 1.34 LINK C GLY C 8 N ALY C 9 1555 1555 1.33 LINK C ALY C 9 N ILE C 10 1555 1555 1.33 LINK C CYS C 17 N NH2 C 101 1555 1555 1.43 SITE 1 AC1 8 LEU B 92 ALY C 2 LYS C 3 THR C 13 SITE 2 AC1 8 LEU C 14 HIS C 15 ILE C 16 CYS C 17 SITE 1 AC2 6 LEU B 92 LEU B 94 TRP C 1 HIS C 15 SITE 2 AC2 6 ILE C 16 NH2 C 101 SITE 1 AC3 10 PRO B 82 VAL B 87 LEU B 92 ILE B 146 SITE 2 AC3 10 ACE C 0 LYS C 3 THR C 13 LEU C 14 SITE 3 AC3 10 HIS C 15 HOH C 202 SITE 1 AC4 14 GLN A 78 TRP A 81 PRO B 82 VAL B 87 SITE 2 AC4 14 ILE B 146 TRP C 1 ALA C 4 LYS C 12 SITE 3 AC4 14 THR C 13 LEU C 14 HOH C 201 HOH C 202 SITE 4 AC4 14 HOH C 203 HOH C 208 SITE 1 AC5 10 LEU A 92 ASN A 140 ILE A 146 HOH A 205 SITE 2 AC5 10 HOH A 265 LEU C 6 PRO C 7 ILE C 10 SITE 3 AC5 10 HOH C 206 HOH C 207 SITE 1 AC6 11 ASN A 140 ILE A 146 HOH A 205 HOH A 265 SITE 2 AC6 11 ILE C 5 LEU C 6 PRO C 7 GLY C 8 SITE 3 AC6 11 LEU C 11 LYS C 12 HOH C 207 SITE 1 AC7 5 LEU B 92 LEU B 94 ACE C 0 HIS C 15 SITE 2 AC7 5 ILE C 16 CRYST1 61.834 72.616 86.056 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016172 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011620 0.00000