HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-SEP-19 6U9K TITLE MLL1 SET N3861I/Q3867L BOUND TO INHIBITOR 18 (TC-5153) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.43; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 2 11-OCT-23 6U9K 1 REMARK REVDAT 1 01-JUL-20 6U9K 0 JRNL AUTH T.R.CHERN,L.LIU,E.PETRUNAK,J.A.STUCKEY,M.WANG,D.BERNARD, JRNL AUTH 2 H.ZHOU,S.LEE,Y.DOU,S.WANG JRNL TITL DISCOVERY OF POTENT SMALL-MOLECULE INHIBITORS OF MLL JRNL TITL 2 METHYLTRANSFERASE. JRNL REF ACS MED.CHEM.LETT. V. 11 1348 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32551023 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00229 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1203 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 479 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2343 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 450 REMARK 3 BIN R VALUE (WORKING SET) : 0.2327 REMARK 3 BIN FREE R VALUE : 0.2583 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12350 REMARK 3 B22 (A**2) : -0.12350 REMARK 3 B33 (A**2) : 0.24700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.178 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.158 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.159 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2538 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3505 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 861 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 489 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2538 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 322 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 8 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3032 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3813 - 3823} REMARK 3 ORIGIN FOR THE GROUP (A): 19.1202 5.1943 -2.3187 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: -0.0042 REMARK 3 T33: -0.0643 T12: 0.1383 REMARK 3 T13: 0.0097 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 1.5985 L22: 0.4922 REMARK 3 L33: 0.0000 L12: -1.5265 REMARK 3 L13: -0.3703 L23: -1.8123 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.1180 S13: 0.0481 REMARK 3 S21: -0.0441 S22: 0.0050 S23: -0.1350 REMARK 3 S31: -0.3851 S32: 0.2089 S33: -0.0779 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|3824 - 3855} REMARK 3 ORIGIN FOR THE GROUP (A): 3.4755 14.9181 1.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: -0.0203 REMARK 3 T33: 0.0589 T12: 0.1184 REMARK 3 T13: 0.0246 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.2511 L22: 7.9778 REMARK 3 L33: 8.4302 L12: -1.8326 REMARK 3 L13: -1.7499 L23: -1.8996 REMARK 3 S TENSOR REMARK 3 S11: 0.4730 S12: -0.0129 S13: 0.2665 REMARK 3 S21: -0.8355 S22: -0.4554 S23: -0.4305 REMARK 3 S31: 0.1187 S32: 0.4857 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|3856 - 3919} REMARK 3 ORIGIN FOR THE GROUP (A): 2.0709 -0.1309 10.2340 REMARK 3 T TENSOR REMARK 3 T11: -0.1003 T22: -0.1877 REMARK 3 T33: -0.1085 T12: 0.0744 REMARK 3 T13: -0.0223 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.9922 L22: 3.3045 REMARK 3 L33: 2.6005 L12: 0.3868 REMARK 3 L13: -1.0914 L23: -0.8222 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.2268 S13: -0.4593 REMARK 3 S21: -0.5096 S22: -0.3086 S23: 0.2673 REMARK 3 S31: 0.3179 S32: 0.0840 S33: 0.2324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|3920 - 3945} REMARK 3 ORIGIN FOR THE GROUP (A): 5.0258 6.8909 -1.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: -0.1751 REMARK 3 T33: -0.1393 T12: 0.1997 REMARK 3 T13: -0.0480 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 3.7149 L22: 8.1096 REMARK 3 L33: 4.5037 L12: -4.9838 REMARK 3 L13: -1.5103 L23: -1.1098 REMARK 3 S TENSOR REMARK 3 S11: 0.4481 S12: 0.2057 S13: 0.0617 REMARK 3 S21: -0.9709 S22: -0.4645 S23: -0.3198 REMARK 3 S31: 0.6456 S32: 0.3046 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|3946 - 3968} REMARK 3 ORIGIN FOR THE GROUP (A): -13.1133 2.5988 -1.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0456 REMARK 3 T33: -0.0580 T12: -0.0143 REMARK 3 T13: -0.1449 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 7.2350 L22: 5.5054 REMARK 3 L33: 0.0000 L12: 5.2600 REMARK 3 L13: 3.9946 L23: 5.3382 REMARK 3 S TENSOR REMARK 3 S11: 0.2797 S12: -0.1709 S13: 0.0147 REMARK 3 S21: -0.2361 S22: -0.0133 S23: -0.1071 REMARK 3 S31: 0.1384 S32: -0.3346 S33: -0.2664 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|3814 - 3826} REMARK 3 ORIGIN FOR THE GROUP (A): -15.1653 19.1885 -8.2945 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: -0.0227 REMARK 3 T33: 0.0513 T12: 0.1054 REMARK 3 T13: -0.0748 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 2.9535 L22: -1.3855 REMARK 3 L33: 0.0000 L12: -2.1578 REMARK 3 L13: 0.6430 L23: -1.3613 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.0694 S13: -0.0771 REMARK 3 S21: -0.1293 S22: 0.1451 S23: 0.1248 REMARK 3 S31: 0.1321 S32: -0.5178 S33: -0.1366 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|3827 - 3847} REMARK 3 ORIGIN FOR THE GROUP (A): -13.7060 40.0682 -13.4111 REMARK 3 T TENSOR REMARK 3 T11: -0.0499 T22: -0.1030 REMARK 3 T33: -0.0776 T12: 0.1012 REMARK 3 T13: -0.0155 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 8.3182 L22: 4.4147 REMARK 3 L33: 6.4633 L12: -3.3388 REMARK 3 L13: -3.4301 L23: 0.1491 REMARK 3 S TENSOR REMARK 3 S11: -0.3569 S12: -0.0995 S13: 0.1431 REMARK 3 S21: 0.3508 S22: 0.4679 S23: 0.1569 REMARK 3 S31: 0.0133 S32: -0.1213 S33: -0.1111 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|3848 - 3914} REMARK 3 ORIGIN FOR THE GROUP (A): -2.2068 30.4918 -18.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: -0.0577 REMARK 3 T33: -0.0099 T12: 0.0874 REMARK 3 T13: -0.0217 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.9846 L22: 3.6359 REMARK 3 L33: 2.5859 L12: -0.4183 REMARK 3 L13: -2.8525 L23: -0.3381 REMARK 3 S TENSOR REMARK 3 S11: -0.6323 S12: -0.2337 S13: -0.0783 REMARK 3 S21: 0.2147 S22: 0.4062 S23: -0.4107 REMARK 3 S31: 0.2342 S32: 0.2517 S33: 0.2261 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|3915 - 3946} REMARK 3 ORIGIN FOR THE GROUP (A): -7.0207 29.2636 -7.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: -0.1309 REMARK 3 T33: -0.2417 T12: 0.2832 REMARK 3 T13: -0.0421 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 2.6375 L22: 9.9521 REMARK 3 L33: 4.1973 L12: -5.1571 REMARK 3 L13: -1.8548 L23: 0.2145 REMARK 3 S TENSOR REMARK 3 S11: -0.5704 S12: -0.4340 S13: -0.1854 REMARK 3 S21: 0.7290 S22: 0.5169 S23: 0.2260 REMARK 3 S31: 0.7479 S32: 0.3662 S33: 0.0535 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {B|3954 - 3969} REMARK 3 ORIGIN FOR THE GROUP (A): 4.5682 44.6622 -6.9460 REMARK 3 T TENSOR REMARK 3 T11: -0.0374 T22: 0.0851 REMARK 3 T33: -0.0680 T12: 0.0164 REMARK 3 T13: -0.0870 T23: -0.1591 REMARK 3 L TENSOR REMARK 3 L11: 8.1272 L22: 3.3050 REMARK 3 L33: 0.0000 L12: 5.2083 REMARK 3 L13: 6.9476 L23: -1.6135 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.0642 S13: -0.1179 REMARK 3 S21: -0.1103 S22: 0.3262 S23: 0.0385 REMARK 3 S31: -0.2040 S32: 0.4059 S33: -0.2859 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.93000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3812 REMARK 465 PRO A 3947 REMARK 465 ILE A 3948 REMARK 465 GLU A 3949 REMARK 465 ASP A 3950 REMARK 465 ALA A 3951 REMARK 465 SER A 3952 REMARK 465 ASN A 3953 REMARK 465 ASN A 3969 REMARK 465 SER B 3812 REMARK 465 ASP B 3813 REMARK 465 PRO B 3947 REMARK 465 ILE B 3948 REMARK 465 GLU B 3949 REMARK 465 ASP B 3950 REMARK 465 ALA B 3951 REMARK 465 SER B 3952 REMARK 465 ASN B 3953 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A3813 CG OD1 OD2 REMARK 470 MET A3818 CG SD CE REMARK 470 HIS A3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A3824 CG CD CE NZ REMARK 470 LYS A3825 CG CD CE NZ REMARK 470 LYS A3828 CG CD CE NZ REMARK 470 GLU A3829 CG CD OE1 OE2 REMARK 470 ARG A3835 CD NE CZ NH1 NH2 REMARK 470 LYS A3878 CG CD CE NZ REMARK 470 ARG A3886 CG CD NE CZ NH1 NH2 REMARK 470 ASP A3889 CG OD1 OD2 REMARK 470 ASP A3921 CG OD1 OD2 REMARK 470 LYS A3924 CE NZ REMARK 470 LYS A3945 CG CD CE NZ REMARK 470 LYS A3954 CG CD CE NZ REMARK 470 LEU A3955 CG CD1 CD2 REMARK 470 LYS A3962 CD CE NZ REMARK 470 LYS A3963 CG CD CE NZ REMARK 470 ARG A3965 CG CD NE CZ NH1 NH2 REMARK 470 MET B3818 CG SD CE REMARK 470 HIS B3822 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B3824 CG CD CE NZ REMARK 470 LYS B3825 CG CD CE NZ REMARK 470 LYS B3828 CG CD CE NZ REMARK 470 GLU B3829 CG CD OE1 OE2 REMARK 470 LYS B3878 CG CD CE NZ REMARK 470 ASP B3889 CG OD1 OD2 REMARK 470 LYS B3945 CG CD CE NZ REMARK 470 LYS B3954 CG CD CE NZ REMARK 470 LEU B3955 CG CD1 CD2 REMARK 470 LYS B3962 CD CE NZ REMARK 470 LYS B3963 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A3821 -17.62 -49.75 REMARK 500 LEU A3823 -54.27 -155.31 REMARK 500 VAL A3855 -60.48 -91.25 REMARK 500 ASP A3888 -158.76 -169.20 REMARK 500 LYS A3966 -6.43 66.29 REMARK 500 ARG B3821 -19.99 -45.96 REMARK 500 LEU B3823 -51.65 -155.55 REMARK 500 ASP B3888 -166.06 -167.70 REMARK 500 LYS B3966 -5.48 65.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B4184 DISTANCE = 10.53 ANGSTROMS REMARK 525 HOH B4185 DISTANCE = 13.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A3909 SG REMARK 620 2 CYS A3957 SG 109.0 REMARK 620 3 CYS A3959 SG 111.6 106.5 REMARK 620 4 CYS A3964 SG 110.2 112.0 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B3909 SG REMARK 620 2 CYS B3957 SG 108.0 REMARK 620 3 CYS B3959 SG 111.8 106.3 REMARK 620 4 CYS B3964 SG 108.4 112.3 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2V A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q2V B 4003 DBREF 6U9K A 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 DBREF 6U9K B 3813 3969 UNP B4DIJ7 B4DIJ7_HUMAN 167 323 SEQADV 6U9K SER A 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9K ILE A 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9K LEU A 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQADV 6U9K SER B 3812 UNP B4DIJ7 EXPRESSION TAG SEQADV 6U9K ILE B 3861 UNP B4DIJ7 ASN 215 ENGINEERED MUTATION SEQADV 6U9K LEU B 3867 UNP B4DIJ7 GLN 221 ENGINEERED MUTATION SEQRES 1 A 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 A 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 A 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 A 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 A 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 A 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 A 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 A 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 A 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 A 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 A 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 A 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 A 158 LEU ASN SEQRES 1 B 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 B 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 B 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 B 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 B 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 B 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 B 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 B 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 B 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 B 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 B 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 B 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 B 158 LEU ASN HET ZN A4001 1 HET Q2V A4002 88 HET ZN B4001 1 HET GOL B4002 14 HET Q2V B4003 88 HETNAM ZN ZINC ION HETNAM Q2V 5'-([(3S)-3-AMINO-3-CARBOXYPROPYL]{[1-(3,3- HETNAM 2 Q2V DIPHENYLPROPYL)AZETIDIN-3-YL]METHYL}AMINO)-5'- HETNAM 3 Q2V DEOXYADENOSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 Q2V 2(C33 H42 N8 O5) FORMUL 6 GOL C3 H8 O3 FORMUL 8 HOH *167(H2 O) HELIX 1 AA1 PRO A 3815 ARG A 3821 1 7 HELIX 2 AA2 LEU A 3823 ALA A 3830 1 8 HELIX 3 AA3 LEU A 3867 LYS A 3878 1 12 HELIX 4 AA4 ASN A 3900 ILE A 3905 5 6 HELIX 5 AA5 PRO B 3815 ARG B 3821 1 7 HELIX 6 AA6 LEU B 3823 ALA B 3830 1 8 HELIX 7 AA7 LEU B 3867 LYS B 3878 1 12 HELIX 8 AA8 ASN B 3900 ILE B 3905 5 6 SHEET 1 AA1 4 VAL A3831 ARG A3835 0 SHEET 2 AA1 4 ARG A3841 CYS A3845 -1 O PHE A3844 N GLY A3832 SHEET 3 AA1 4 GLU A3939 TYR A3942 -1 O LEU A3940 N LEU A3843 SHEET 4 AA1 4 ASN A3906 HIS A3907 1 N ASN A3906 O TYR A3942 SHEET 1 AA2 3 MET A3854 TYR A3858 0 SHEET 2 AA2 3 GLN A3923 ALA A3930 -1 O ILE A3928 N VAL A3855 SHEET 3 AA2 3 CYS A3913 ILE A3920 -1 N ILE A3918 O HIS A3925 SHEET 1 AA3 3 ILE A3861 ARG A3864 0 SHEET 2 AA3 3 GLU A3891 ASP A3894 -1 O VAL A3892 N ILE A3863 SHEET 3 AA3 3 MET A3884 ARG A3886 -1 N PHE A3885 O VAL A3893 SHEET 1 AA4 4 VAL B3831 ARG B3835 0 SHEET 2 AA4 4 ARG B3841 CYS B3845 -1 O PHE B3844 N GLY B3832 SHEET 3 AA4 4 GLU B3939 TYR B3942 -1 O LEU B3940 N LEU B3843 SHEET 4 AA4 4 ASN B3906 HIS B3907 1 N ASN B3906 O TYR B3942 SHEET 1 AA5 3 MET B3854 TYR B3858 0 SHEET 2 AA5 3 GLN B3923 ALA B3930 -1 O ILE B3928 N VAL B3855 SHEET 3 AA5 3 CYS B3913 ILE B3920 -1 N ILE B3918 O HIS B3925 SHEET 1 AA6 3 ILE B3861 ARG B3864 0 SHEET 2 AA6 3 GLU B3891 ASP B3894 -1 O VAL B3892 N ILE B3863 SHEET 3 AA6 3 MET B3884 ARG B3886 -1 N PHE B3885 O VAL B3893 LINK SG CYS A3909 ZN ZN A4001 1555 1555 2.27 LINK SG CYS A3957 ZN ZN A4001 1555 1555 2.42 LINK SG CYS A3959 ZN ZN A4001 1555 1555 2.31 LINK SG CYS A3964 ZN ZN A4001 1555 1555 2.44 LINK SG CYS B3909 ZN ZN B4001 1555 1555 2.27 LINK SG CYS B3957 ZN ZN B4001 1555 1555 2.37 LINK SG CYS B3959 ZN ZN B4001 1555 1555 2.31 LINK SG CYS B3964 ZN ZN B4001 1555 1555 2.41 SITE 1 AC1 4 CYS A3909 CYS A3957 CYS A3959 CYS A3964 SITE 1 AC2 17 ILE A3838 HIS A3839 ARG A3841 GLY A3879 SITE 2 AC2 17 GLY A3881 CYS A3882 TYR A3883 PHE A3904 SITE 3 AC2 17 ASN A3906 HIS A3907 TYR A3944 PRO A3956 SITE 4 AC2 17 CYS A3957 ASN A3958 LEU A3968 HOH A4105 SITE 5 AC2 17 HOH A4136 SITE 1 AC3 4 CYS B3909 CYS B3957 CYS B3959 CYS B3964 SITE 1 AC4 3 GLY A3937 MET B3816 ARG B3916 SITE 1 AC5 16 ILE B3838 HIS B3839 ARG B3841 GLY B3879 SITE 2 AC5 16 GLY B3881 CYS B3882 TYR B3883 PHE B3904 SITE 3 AC5 16 ASN B3906 HIS B3907 TYR B3944 PRO B3956 SITE 4 AC5 16 CYS B3957 ASN B3958 HOH B4104 HOH B4139 CRYST1 54.949 54.949 104.895 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018199 0.010507 0.000000 0.00000 SCALE2 0.000000 0.021014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009533 0.00000