HEADER RNA BINDING PROTEIN/RNA 09-SEP-19 6U9X TITLE STRUCTURE OF T. BRUCEI MERS1-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL EDITED MRNA STABILITY FACTOR 1; COMPND 3 CHAIN: D, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(*GP*AP*GP*AP*GP*GP*GP*GP*GP*UP*U)-3'); COMPND 7 CHAIN: H, K; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: MERS1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 10 ORGANISM_TAXID: 5691 KEYWDS MERS1, MRNA, TMRNA PROCESSING, NUDIX MOTIF, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 11-OCT-23 6U9X 1 REMARK REVDAT 3 01-JAN-20 6U9X 1 JRNL REVDAT 2 20-NOV-19 6U9X 1 JRNL REVDAT 1 06-NOV-19 6U9X 0 JRNL AUTH M.A.SCHUMACHER,M.HENDERSON,W.ZENG JRNL TITL STRUCTURES OF MERS1, THE 5' PROCESSING ENZYME OF JRNL TITL 2 MITOCHONDRIAL MRNAS INTRYPANOSOMA BRUCEI. JRNL REF RNA V. 26 69 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 31704716 JRNL DOI 10.1261/RNA.072231.119 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 23908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.3910 - 6.2652 0.92 1624 148 0.1991 0.2107 REMARK 3 2 6.2652 - 4.9732 0.93 1594 145 0.2082 0.2080 REMARK 3 3 4.9732 - 4.3447 0.95 1654 151 0.1705 0.2230 REMARK 3 4 4.3447 - 3.9474 0.96 1627 148 0.1776 0.1851 REMARK 3 5 3.9474 - 3.6645 0.92 1561 143 0.1989 0.2348 REMARK 3 6 3.6645 - 3.4485 0.95 1625 148 0.2165 0.2447 REMARK 3 7 3.4485 - 3.2758 0.96 1625 148 0.2394 0.2808 REMARK 3 8 3.2758 - 3.1332 0.92 1545 140 0.2497 0.3361 REMARK 3 9 3.1332 - 3.0125 0.94 1577 145 0.2675 0.3415 REMARK 3 10 3.0125 - 2.9086 0.93 1589 145 0.2848 0.2959 REMARK 3 11 2.9086 - 2.8176 0.95 1621 148 0.2979 0.3489 REMARK 3 12 2.8176 - 2.7371 0.95 1612 148 0.2995 0.3233 REMARK 3 13 2.7371 - 2.6650 0.83 1398 126 0.3043 0.4190 REMARK 3 14 2.6650 - 2.6000 0.74 1259 114 0.2922 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5152 REMARK 3 ANGLE : 0.684 7061 REMARK 3 CHIRALITY : 0.050 757 REMARK 3 PLANARITY : 0.005 878 REMARK 3 DIHEDRAL : 8.603 3061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.6612 -44.8791 -20.0135 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2004 REMARK 3 T33: 0.1979 T12: 0.0114 REMARK 3 T13: 0.0054 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1986 L22: 0.1380 REMARK 3 L33: 0.1371 L12: 0.0605 REMARK 3 L13: 0.1132 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0422 S13: -0.0118 REMARK 3 S21: -0.0499 S22: 0.0548 S23: 0.0365 REMARK 3 S31: -0.0134 S32: 0.0162 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6U9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 74.391 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48600 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6P5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M N-CYCLOHEXYL-3 REMARK 280 -AMINOPROPANESULFONIC ACID (CAPS) PH 10.5, 800 MM POTASSIUM REMARK 280 PHOSPHATE DIBASIC, 1.2 M SODIUM PHOSPHATE MONOBASIC, 0.2 M REMARK 280 LITHIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.22250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.22250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 23.82919 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.25426 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 23.82919 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.25426 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 33 REMARK 465 SER D 34 REMARK 465 HIS D 35 REMARK 465 MET D 36 REMARK 465 ASP D 37 REMARK 465 ASP D 38 REMARK 465 ALA D 39 REMARK 465 LEU D 40 REMARK 465 ARG D 41 REMARK 465 GLY D 42 REMARK 465 GLU D 43 REMARK 465 LEU D 44 REMARK 465 ALA D 45 REMARK 465 SER D 46 REMARK 465 ALA D 47 REMARK 465 LEU D 48 REMARK 465 ASP D 49 REMARK 465 THR D 50 REMARK 465 GLU D 51 REMARK 465 GLY D 52 REMARK 465 HIS D 53 REMARK 465 ALA D 54 REMARK 465 LEU D 55 REMARK 465 PRO D 56 REMARK 465 PHE D 57 REMARK 465 ASP D 58 REMARK 465 GLN D 62 REMARK 465 GLN D 63 REMARK 465 PRO D 64 REMARK 465 HIS D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 GLY D 68 REMARK 465 ASP D 69 REMARK 465 GLY D 70 REMARK 465 THR D 71 REMARK 465 ALA D 72 REMARK 465 GLY D 73 REMARK 465 ASP D 74 REMARK 465 THR D 75 REMARK 465 LEU D 92 REMARK 465 LEU D 93 REMARK 465 THR D 94 REMARK 465 LYS D 146 REMARK 465 GLY D 147 REMARK 465 SER D 148 REMARK 465 GLY D 149 REMARK 465 SER D 150 REMARK 465 ASP D 151 REMARK 465 ASP D 152 REMARK 465 GLY D 153 REMARK 465 ASP D 154 REMARK 465 GLY D 155 REMARK 465 THR D 156 REMARK 465 ASP D 381 REMARK 465 GLY D 382 REMARK 465 SER D 383 REMARK 465 ILE D 384 REMARK 465 THR D 385 REMARK 465 PRO D 386 REMARK 465 SER D 387 REMARK 465 THR D 388 REMARK 465 GLY D 389 REMARK 465 ASN D 390 REMARK 465 GLY D 391 REMARK 465 GLU D 392 REMARK 465 ASP D 393 REMARK 465 ALA D 394 REMARK 465 SER D 395 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 ASP A 37 REMARK 465 ASP A 38 REMARK 465 ALA A 39 REMARK 465 LEU A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 PHE A 57 REMARK 465 ASP A 58 REMARK 465 PRO A 64 REMARK 465 HIS A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 GLY A 70 REMARK 465 THR A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 73 REMARK 465 ASP A 74 REMARK 465 THR A 75 REMARK 465 LEU A 92 REMARK 465 LEU A 93 REMARK 465 THR A 94 REMARK 465 ASN A 95 REMARK 465 VAL A 145 REMARK 465 LYS A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 ASP A 151 REMARK 465 ASP A 152 REMARK 465 GLY A 153 REMARK 465 ASP A 154 REMARK 465 GLY A 155 REMARK 465 THR A 156 REMARK 465 ASP A 381 REMARK 465 GLY A 382 REMARK 465 SER A 383 REMARK 465 ILE A 384 REMARK 465 THR A 385 REMARK 465 PRO A 386 REMARK 465 SER A 387 REMARK 465 THR A 388 REMARK 465 GLY A 389 REMARK 465 ASN A 390 REMARK 465 GLY A 391 REMARK 465 GLU A 392 REMARK 465 ASP A 393 REMARK 465 ALA A 394 REMARK 465 SER A 395 REMARK 465 G H 26 REMARK 465 A H 27 REMARK 465 G H 28 REMARK 465 A H 29 REMARK 465 G H 34 REMARK 465 U H 35 REMARK 465 U H 36 REMARK 465 G K 26 REMARK 465 A K 27 REMARK 465 G K 28 REMARK 465 A K 29 REMARK 465 G K 34 REMARK 465 U K 35 REMARK 465 U K 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS D 60 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 61 CG CD1 CD2 REMARK 470 SER D 76 CB OG REMARK 470 ASN D 95 CG OD1 ND2 REMARK 470 TRP D 158 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 158 CZ3 CH2 REMARK 470 LEU D 206 CG CD1 CD2 REMARK 470 GLU D 211 CG CD OE1 OE2 REMARK 470 HIS A 60 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 76 CB OG REMARK 470 TRP A 158 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 158 CZ3 CH2 REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 G H 33 N9 C8 N7 C5 C6 O6 N1 REMARK 480 G H 33 C2 N2 N3 C4 REMARK 480 G K 33 N9 C8 N7 C5 C6 O6 N1 REMARK 480 G K 33 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 289 O2' G K 32 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 116 8.57 58.97 REMARK 500 LYS D 239 -104.78 -131.85 REMARK 500 TYR D 281 52.00 -109.68 REMARK 500 ALA D 292 149.05 -171.11 REMARK 500 VAL D 306 62.26 34.21 REMARK 500 ARG D 356 -50.14 -143.91 REMARK 500 GLN A 62 89.12 66.17 REMARK 500 THR A 103 -169.25 -160.64 REMARK 500 MET A 115 46.22 -147.99 REMARK 500 LYS A 239 -102.23 -123.81 REMARK 500 TYR A 281 58.61 -112.53 REMARK 500 ASP A 297 37.92 -98.23 REMARK 500 VAL A 306 61.65 35.17 REMARK 500 ARG A 356 -33.35 -144.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 6U9X D 37 395 UNP B6SBM0 B6SBM0_9TRYP 37 395 DBREF 6U9X A 37 395 UNP B6SBM0 B6SBM0_9TRYP 37 395 DBREF 6U9X H 26 36 PDB 6U9X 6U9X 26 36 DBREF 6U9X K 26 36 PDB 6U9X 6U9X 26 36 SEQADV 6U9X GLY D 33 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X SER D 34 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X HIS D 35 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X MET D 36 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X GLY A 33 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X SER A 34 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X HIS A 35 UNP B6SBM0 EXPRESSION TAG SEQADV 6U9X MET A 36 UNP B6SBM0 EXPRESSION TAG SEQRES 1 D 363 GLY SER HIS MET ASP ASP ALA LEU ARG GLY GLU LEU ALA SEQRES 2 D 363 SER ALA LEU ASP THR GLU GLY HIS ALA LEU PRO PHE ASP SEQRES 3 D 363 VAL HIS LEU GLN GLN PRO HIS SER SER GLY ASP GLY THR SEQRES 4 D 363 ALA GLY ASP THR SER THR ILE GLN LEU GLU LYS LEU SER SEQRES 5 D 363 HIS PRO PRO ALA ARG PHE ASP LEU LEU THR ASN SER PHE SEQRES 6 D 363 VAL TYR LYS TRP GLN THR LYS ALA ALA LEU ALA ARG LYS SEQRES 7 D 363 VAL SER GLY PRO MET ARG GLU TRP ALA ALA GLU LEU LYS SEQRES 8 D 363 TYR ARG THR GLY VAL HIS ILE GLU LEU GLU PRO THR TYR SEQRES 9 D 363 PRO GLU ARG LEU SER GLU ASN ALA VAL LYS GLY SER GLY SEQRES 10 D 363 SER ASP ASP GLY ASP GLY THR GLN TRP GLY ALA TYR GLU SEQRES 11 D 363 THR ALA ASP ASP VAL ASP ILE THR VAL TYR LEU PHE GLY SEQRES 12 D 363 SER GLU ARG GLY ILE PHE ASN CYS HIS LYS LEU MET GLU SEQRES 13 D 363 ALA ALA ILE GLN GLN ASP PRO VAL TYR VAL ARG LEU GLY SEQRES 14 D 363 ILE PHE ARG ARG LEU ALA ASN SER SER GLU VAL GLU TRP SEQRES 15 D 363 LEU MET LEU ARG ARG ILE ASN ARG GLU LEU ARG PRO PRO SEQRES 16 D 363 ASP ILE PRO PRO ILE SER LEU LYS LEU PRO GLY LYS TRP SEQRES 17 D 363 THR LEU LEU TYR GLU ARG TYR LYS GLU ALA ALA ILE ARG SEQRES 18 D 363 THR LEU TRP GLU GLU THR GLY ILE THR VAL ASP ALA SER SEQRES 19 D 363 ASN VAL TYR PRO THR GLY HIS LEU TYR GLN THR VAL PRO SEQRES 20 D 363 GLN TYR TYR TRP ARG VAL PRO VAL ARG TYR PHE VAL ALA SEQRES 21 D 363 GLU VAL PRO SER ASP ILE ARG VAL GLU GLY PRO GLN VAL SEQRES 22 D 363 VAL PRO LEU GLN TYR MET ARG ASN TRP ASP ALA ARG LEU SEQRES 23 D 363 LEU ARG GLN SER PRO ASP PRO ILE ASP ARG ALA TRP ALA SEQRES 24 D 363 GLN LEU ALA ASP PRO ALA THR GLY CYS ALA TRP MET LYS SEQRES 25 D 363 ALA SER MET ILE ASP GLN LEU GLN LYS PRO LEU ARG GLY SEQRES 26 D 363 ASP ASN TYR MET ALA ILE ARG TYR THR PRO PRO PRO TYR SEQRES 27 D 363 SER ASN LEU GLN GLU VAL VAL GLY LEU GLY ASP GLY SER SEQRES 28 D 363 ILE THR PRO SER THR GLY ASN GLY GLU ASP ALA SER SEQRES 1 A 363 GLY SER HIS MET ASP ASP ALA LEU ARG GLY GLU LEU ALA SEQRES 2 A 363 SER ALA LEU ASP THR GLU GLY HIS ALA LEU PRO PHE ASP SEQRES 3 A 363 VAL HIS LEU GLN GLN PRO HIS SER SER GLY ASP GLY THR SEQRES 4 A 363 ALA GLY ASP THR SER THR ILE GLN LEU GLU LYS LEU SER SEQRES 5 A 363 HIS PRO PRO ALA ARG PHE ASP LEU LEU THR ASN SER PHE SEQRES 6 A 363 VAL TYR LYS TRP GLN THR LYS ALA ALA LEU ALA ARG LYS SEQRES 7 A 363 VAL SER GLY PRO MET ARG GLU TRP ALA ALA GLU LEU LYS SEQRES 8 A 363 TYR ARG THR GLY VAL HIS ILE GLU LEU GLU PRO THR TYR SEQRES 9 A 363 PRO GLU ARG LEU SER GLU ASN ALA VAL LYS GLY SER GLY SEQRES 10 A 363 SER ASP ASP GLY ASP GLY THR GLN TRP GLY ALA TYR GLU SEQRES 11 A 363 THR ALA ASP ASP VAL ASP ILE THR VAL TYR LEU PHE GLY SEQRES 12 A 363 SER GLU ARG GLY ILE PHE ASN CYS HIS LYS LEU MET GLU SEQRES 13 A 363 ALA ALA ILE GLN GLN ASP PRO VAL TYR VAL ARG LEU GLY SEQRES 14 A 363 ILE PHE ARG ARG LEU ALA ASN SER SER GLU VAL GLU TRP SEQRES 15 A 363 LEU MET LEU ARG ARG ILE ASN ARG GLU LEU ARG PRO PRO SEQRES 16 A 363 ASP ILE PRO PRO ILE SER LEU LYS LEU PRO GLY LYS TRP SEQRES 17 A 363 THR LEU LEU TYR GLU ARG TYR LYS GLU ALA ALA ILE ARG SEQRES 18 A 363 THR LEU TRP GLU GLU THR GLY ILE THR VAL ASP ALA SER SEQRES 19 A 363 ASN VAL TYR PRO THR GLY HIS LEU TYR GLN THR VAL PRO SEQRES 20 A 363 GLN TYR TYR TRP ARG VAL PRO VAL ARG TYR PHE VAL ALA SEQRES 21 A 363 GLU VAL PRO SER ASP ILE ARG VAL GLU GLY PRO GLN VAL SEQRES 22 A 363 VAL PRO LEU GLN TYR MET ARG ASN TRP ASP ALA ARG LEU SEQRES 23 A 363 LEU ARG GLN SER PRO ASP PRO ILE ASP ARG ALA TRP ALA SEQRES 24 A 363 GLN LEU ALA ASP PRO ALA THR GLY CYS ALA TRP MET LYS SEQRES 25 A 363 ALA SER MET ILE ASP GLN LEU GLN LYS PRO LEU ARG GLY SEQRES 26 A 363 ASP ASN TYR MET ALA ILE ARG TYR THR PRO PRO PRO TYR SEQRES 27 A 363 SER ASN LEU GLN GLU VAL VAL GLY LEU GLY ASP GLY SER SEQRES 28 A 363 ILE THR PRO SER THR GLY ASN GLY GLU ASP ALA SER SEQRES 1 H 11 G A G A G G G G G U U SEQRES 1 K 11 G A G A G G G G G U U FORMUL 5 HOH *41(H2 O) HELIX 1 AA1 ALA D 105 GLY D 113 1 9 HELIX 2 AA2 ARG D 116 GLY D 127 1 12 HELIX 3 AA3 TYR D 136 GLU D 142 5 7 HELIX 4 AA4 THR D 163 ASP D 166 5 4 HELIX 5 AA5 SER D 176 ILE D 191 1 16 HELIX 6 AA6 ARG D 246 GLY D 260 1 15 HELIX 7 AA7 ASP D 264 VAL D 268 5 5 HELIX 8 AA8 VAL D 278 TYR D 282 5 5 HELIX 9 AA9 VAL D 306 TYR D 310 5 5 HELIX 10 AB1 ASP D 315 GLN D 321 1 7 HELIX 11 AB2 ASP D 324 ALA D 334 1 11 HELIX 12 AB3 ALA D 345 LYS D 353 1 9 HELIX 13 AB4 ASN D 359 TYR D 365 1 7 HELIX 14 AB5 PRO D 368 ASN D 372 5 5 HELIX 15 AB6 LEU D 373 GLY D 378 1 6 HELIX 16 AB7 ALA A 105 GLY A 113 1 9 HELIX 17 AB8 ARG A 116 GLY A 127 1 12 HELIX 18 AB9 TYR A 136 GLU A 142 5 7 HELIX 19 AC1 THR A 163 ASP A 166 5 4 HELIX 20 AC2 SER A 176 ILE A 191 1 16 HELIX 21 AC3 ARG A 246 GLY A 260 1 15 HELIX 22 AC4 ASP A 264 SER A 266 5 3 HELIX 23 AC5 VAL A 278 TYR A 282 5 5 HELIX 24 AC6 VAL A 306 TYR A 310 5 5 HELIX 25 AC7 ASP A 315 GLN A 321 1 7 HELIX 26 AC8 ASP A 324 LEU A 333 1 10 HELIX 27 AC9 ALA A 345 GLY A 357 1 13 HELIX 28 AD1 ASN A 359 TYR A 365 1 7 HELIX 29 AD2 PRO A 368 ASN A 372 5 5 HELIX 30 AD3 LEU A 373 GLY A 378 1 6 SHEET 1 AA1 4 GLU D 81 LYS D 82 0 SHEET 2 AA1 4 PHE D 97 LYS D 104 -1 O LYS D 100 N GLU D 81 SHEET 3 AA1 4 ASP D 168 GLY D 175 -1 O VAL D 171 N TRP D 101 SHEET 4 AA1 4 HIS D 129 PRO D 134 -1 N GLU D 133 O THR D 170 SHEET 1 AA2 5 ILE D 232 LYS D 235 0 SHEET 2 AA2 5 VAL D 212 ILE D 220 -1 N LEU D 217 O LYS D 235 SHEET 3 AA2 5 TYR D 197 ARG D 205 -1 N ARG D 204 O GLU D 213 SHEET 4 AA2 5 VAL D 287 GLU D 293 1 O PHE D 290 N GLY D 201 SHEET 5 AA2 5 TYR D 269 LEU D 274 -1 N GLY D 272 O TYR D 289 SHEET 1 AA3 3 ILE D 232 LYS D 235 0 SHEET 2 AA3 3 VAL D 212 ILE D 220 -1 N LEU D 217 O LYS D 235 SHEET 3 AA3 3 ALA D 341 LYS D 344 -1 O ALA D 341 N MET D 216 SHEET 1 AA4 4 GLU A 81 LEU A 83 0 SHEET 2 AA4 4 PHE A 97 LYS A 104 -1 O VAL A 98 N LEU A 83 SHEET 3 AA4 4 ASP A 168 GLY A 175 -1 O VAL A 171 N TRP A 101 SHEET 4 AA4 4 HIS A 129 PRO A 134 -1 N GLU A 133 O THR A 170 SHEET 1 AA5 5 ILE A 232 LYS A 235 0 SHEET 2 AA5 5 VAL A 212 ILE A 220 -1 N ARG A 219 O SER A 233 SHEET 3 AA5 5 TYR A 197 ARG A 205 -1 N ILE A 202 O LEU A 215 SHEET 4 AA5 5 VAL A 287 GLU A 293 1 O PHE A 290 N GLY A 201 SHEET 5 AA5 5 VAL A 268 LEU A 274 -1 N GLY A 272 O TYR A 289 SHEET 1 AA6 4 ILE A 232 LYS A 235 0 SHEET 2 AA6 4 VAL A 212 ILE A 220 -1 N ARG A 219 O SER A 233 SHEET 3 AA6 4 CYS A 340 LYS A 344 -1 O MET A 343 N TRP A 214 SHEET 4 AA6 4 ALA A 334 ASP A 335 -1 N ASP A 335 O CYS A 340 CRYST1 142.445 89.360 71.351 90.00 109.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007020 0.000000 0.002487 0.00000 SCALE2 0.000000 0.011191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014869 0.00000