HEADER HYDROLASE 10-SEP-19 6UAF TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH HYDROLYZED IMIPNEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLO-BETA-LACTAMASE L1 (BETA-LACTAMASE TYPE II) COMPND 3 (EC 3.5.2.6) (PENICILLINASE); COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: SMLT2667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LACTAM ANTIBIOTICS, CARBAPENEM, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6UAF 1 COMPND HETNAM REVDAT 2 18-DEC-19 6UAF 1 REMARK REVDAT 1 18-SEP-19 6UAF 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 FROM JRNL TITL 2 STENOTROPHOMONAS MALTOPHILIA IN THE COMPLEX WITH HYDROLYZED JRNL TITL 3 IMIPNEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 25212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3100 - 3.9400 0.99 2924 151 0.1331 0.1465 REMARK 3 2 3.9400 - 3.1300 0.97 2708 152 0.1537 0.1767 REMARK 3 3 3.1300 - 2.7300 0.96 2640 138 0.2022 0.2465 REMARK 3 4 2.7300 - 2.4800 0.96 2604 138 0.2061 0.2776 REMARK 3 5 2.4800 - 2.3000 0.95 2547 160 0.1972 0.2451 REMARK 3 6 2.3000 - 2.1700 0.97 2610 152 0.1894 0.2385 REMARK 3 7 2.1700 - 2.0600 0.97 2623 127 0.1942 0.2465 REMARK 3 8 2.0600 - 1.9700 0.98 2647 122 0.2001 0.2520 REMARK 3 9 1.9700 - 1.9000 0.98 2644 125 0.2128 0.2549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2090 REMARK 3 ANGLE : 0.780 2856 REMARK 3 CHIRALITY : 0.049 320 REMARK 3 PLANARITY : 0.006 376 REMARK 3 DIHEDRAL : 10.370 1673 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4417 19.8626 7.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2237 REMARK 3 T33: 0.2512 T12: 0.0368 REMARK 3 T13: -0.0023 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.3562 L22: 0.5802 REMARK 3 L33: 1.2300 L12: -0.2126 REMARK 3 L13: -0.5780 L23: 0.4314 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0925 S13: -0.2696 REMARK 3 S21: 0.0000 S22: -0.1148 S23: 0.0485 REMARK 3 S31: 0.0993 S32: -0.0432 S33: 0.0972 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7239 26.2726 9.9826 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1761 REMARK 3 T33: 0.1592 T12: 0.0413 REMARK 3 T13: -0.0019 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2412 L22: 1.2787 REMARK 3 L33: 1.1934 L12: -0.4798 REMARK 3 L13: -0.3291 L23: -0.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.0949 S13: -0.0496 REMARK 3 S21: 0.0452 S22: -0.0090 S23: -0.1625 REMARK 3 S31: 0.0584 S32: 0.1181 S33: 0.0500 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3419 37.1507 3.7415 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.2040 REMARK 3 T33: 0.1897 T12: 0.0505 REMARK 3 T13: -0.0011 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6329 L22: 0.9551 REMARK 3 L33: 0.6080 L12: -0.0193 REMARK 3 L13: 0.0801 L23: -0.2859 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.0512 S13: -0.0110 REMARK 3 S21: 0.0628 S22: -0.0407 S23: -0.0552 REMARK 3 S31: -0.0253 S32: 0.0408 S33: 0.0776 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4813 26.6676 -6.3703 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.3077 REMARK 3 T33: 0.3259 T12: 0.0829 REMARK 3 T13: 0.0747 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.8474 L22: 1.4288 REMARK 3 L33: 1.8412 L12: 0.3041 REMARK 3 L13: -0.1963 L23: 0.1754 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.3708 S13: -0.3876 REMARK 3 S21: -0.3003 S22: -0.1982 S23: -0.3557 REMARK 3 S31: 0.2427 S32: 0.2129 S33: 0.0894 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1785 34.5996 -8.8088 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.2126 REMARK 3 T33: 0.1878 T12: 0.0557 REMARK 3 T13: -0.0298 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.8016 L22: 1.4411 REMARK 3 L33: 1.1737 L12: -0.0805 REMARK 3 L13: 0.1615 L23: -0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.0821 S13: 0.0295 REMARK 3 S21: -0.2619 S22: -0.0532 S23: 0.1383 REMARK 3 S31: 0.0137 S32: -0.0260 S33: -0.0167 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1593 15.8157 -6.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.3506 T22: 0.2083 REMARK 3 T33: 0.2603 T12: 0.0685 REMARK 3 T13: 0.0199 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.5024 L22: 1.0618 REMARK 3 L33: 2.1103 L12: -0.1353 REMARK 3 L13: -0.6885 L23: -0.0698 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.1130 S13: -0.4650 REMARK 3 S21: -0.0309 S22: 0.0402 S23: -0.0369 REMARK 3 S31: 0.4486 S32: -0.0053 S33: 0.0869 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6036 28.1036 -14.1269 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2806 REMARK 3 T33: 0.2336 T12: 0.0412 REMARK 3 T13: -0.0526 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 4.1215 L22: 2.0591 REMARK 3 L33: 1.3200 L12: -1.7333 REMARK 3 L13: 1.2623 L23: -0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.2699 S12: 0.0952 S13: -0.1045 REMARK 3 S21: -0.2927 S22: -0.1000 S23: 0.1802 REMARK 3 S31: 0.2906 S32: -0.1587 S33: -0.1717 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26020 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6U0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 7.0, 20 % W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.87567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.75133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.87567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.75133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.87567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.75133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.87567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.75133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.41750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.78977 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 32.87567 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 52.41750 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 90.78977 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 32.87567 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 HIS A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ARG A 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 153.27 71.41 REMARK 500 ALA A 106 57.46 -94.73 REMARK 500 HIS A 110 -34.63 -133.03 REMARK 500 ASP A 192 -168.99 -101.16 REMARK 500 TYR A 220 73.51 -155.15 REMARK 500 CYS A 239 80.90 -155.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 107 ND1 99.2 REMARK 620 3 HIS A 181 NE2 100.2 101.7 REMARK 620 4 HOH A 408 O 121.7 114.4 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 HIS A 110 NE2 88.4 REMARK 620 3 HIS A 246 NE2 92.5 91.7 REMARK 620 4 HIW A 301 O32 176.5 95.1 88.3 REMARK 620 5 HIW A 301 N4 98.4 172.5 84.9 78.2 REMARK 620 6 HOH A 408 O 91.1 99.6 168.2 87.4 83.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIW A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6U0Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APP-FORM REMARK 900 RELATED ID: 6U0Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH PENICILLIN G REMARK 900 RELATED ID: 6U10 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH CAPTOPRIL REMARK 900 RELATED ID: 6U13 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO NICKEL IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6U2Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO COPPER IONS IN THE COMPLEX WITH MOXALACTAM REMARK 900 RELATED ID: 6UA1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NO METAL ION REMARK 900 RELATED ID: 6UAC RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH TWO CADMIUM IONS IN THE COMPLEX WITH REMARK 900 MOXALACTAM REMARK 900 RELATED ID: CSGID-IDP97218 RELATED DB: TARGETTRACK DBREF 6UAF A 1 290 UNP B2FTM1 B2FTM1_STRMK 1 290 SEQADV 6UAF SER A -2 UNP B2FTM1 EXPRESSION TAG SEQADV 6UAF ASN A -1 UNP B2FTM1 EXPRESSION TAG SEQADV 6UAF ALA A 0 UNP B2FTM1 EXPRESSION TAG SEQRES 1 A 293 SER ASN ALA MET ARG PHE THR LEU LEU ALA PHE ALA LEU SEQRES 2 A 293 ALA VAL ALA LEU PRO ALA VAL HIS ALA SER ALA ALA GLU SEQRES 3 A 293 ALA PRO LEU PRO GLN LEU ARG ALA TYR THR VAL ASP ALA SEQRES 4 A 293 SER TRP LEU GLN PRO MET ALA PRO LEU GLN VAL ALA ASP SEQRES 5 A 293 HIS THR TRP GLN ILE GLY THR GLU ASP LEU THR ALA LEU SEQRES 6 A 293 LEU VAL GLN THR ALA GLU GLY ALA VAL LEU LEU ASP GLY SEQRES 7 A 293 GLY MET PRO GLN MET ALA GLY HIS LEU LEU ASP ASN MET SEQRES 8 A 293 LYS LEU ARG GLY VAL ALA PRO GLN ASP LEU ARG LEU ILE SEQRES 9 A 293 LEU LEU SER HIS ALA HIS ALA ASP HIS ALA GLY PRO VAL SEQRES 10 A 293 ALA GLU LEU LYS ARG ARG THR GLY ALA HIS VAL ALA ALA SEQRES 11 A 293 ASN ALA GLU THR ALA VAL LEU LEU ALA ARG GLY GLY SER SEQRES 12 A 293 ASN ASP LEU HIS PHE GLY ASP GLY ILE THR TYR PRO PRO SEQRES 13 A 293 ALA SER ALA ASP ARG ILE ILE MET ASP GLY GLU VAL VAL SEQRES 14 A 293 THR VAL GLY GLY ILE ALA PHE THR ALA HIS PHE MET PRO SEQRES 15 A 293 GLY HIS THR PRO GLY SER THR ALA TRP THR TRP THR ASP SEQRES 16 A 293 THR ARG ASP GLY LYS PRO VAL ARG ILE ALA TYR ALA ASP SEQRES 17 A 293 SER LEU SER ALA PRO GLY TYR GLN LEU LYS GLY ASN PRO SEQRES 18 A 293 ARG TYR PRO ARG LEU ILE GLU ASP TYR LYS ARG SER PHE SEQRES 19 A 293 ALA THR VAL ARG ALA LEU PRO CYS ASP LEU LEU LEU THR SEQRES 20 A 293 PRO HIS PRO GLY ALA SER ASN TRP ASN TYR ALA VAL GLY SEQRES 21 A 293 SER LYS ALA SER ALA GLU ALA LEU THR CYS ASN ALA TYR SEQRES 22 A 293 ALA ASP ALA ALA GLU LYS LYS PHE ASP ALA GLN LEU ALA SEQRES 23 A 293 ARG GLU THR ALA GLY THR ARG HET HIW A 301 21 HET ZN A 302 1 HET ZN A 303 1 HETNAM HIW (2R,4S)-2-[(1S,2R)-1-CARBOXY-2-HYDROXYPROPYL]-4-[(2- HETNAM 2 HIW {[(Z)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-3,4-DIHYDRO- HETNAM 3 HIW 2H-PYRROLE-5-CA RBOXYLIC ACID HETNAM ZN ZINC ION HETSYN HIW HYDROLYZED IMIPENEM FORMUL 2 HIW C12 H19 N3 O5 S FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *222(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 ARG A 91 1 12 HELIX 4 AA4 ALA A 94 GLN A 96 5 3 HELIX 5 AA5 HIS A 107 GLY A 112 1 6 HELIX 6 AA6 PRO A 113 GLY A 122 1 10 HELIX 7 AA7 ASN A 128 ARG A 137 1 10 HELIX 8 AA8 ARG A 222 ALA A 236 1 15 HELIX 9 AA9 HIS A 246 ASN A 251 5 6 HELIX 10 AB1 ASN A 253 ALA A 260 5 8 HELIX 11 AB2 THR A 266 ALA A 287 1 22 SHEET 1 AA1 7 LEU A 45 GLN A 46 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O GLN A 53 N LEU A 45 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O LEU A 73 N LEU A 62 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 HIS A 124 ALA A 127 1 O HIS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 159 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N VAL A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O TYR A 203 N TRP A 188 SHEET 5 AA2 5 LEU A 241 LEU A 243 1 O LEU A 241 N ALA A 202 SSBOND 1 CYS A 239 CYS A 267 1555 1555 2.07 LINK NE2 HIS A 105 ZN ZN A 303 1555 1555 2.04 LINK ND1 HIS A 107 ZN ZN A 303 1555 1555 2.17 LINK OD2 ASP A 109 ZN ZN A 302 1555 1555 2.10 LINK NE2 HIS A 110 ZN ZN A 302 1555 1555 2.15 LINK NE2 HIS A 181 ZN ZN A 303 1555 1555 2.18 LINK NE2 HIS A 246 ZN ZN A 302 1555 1555 2.14 LINK O32 HIW A 301 ZN ZN A 302 1555 1555 2.41 LINK N4 HIW A 301 ZN ZN A 302 1555 1555 2.25 LINK ZN ZN A 302 O HOH A 408 1555 1555 2.13 LINK ZN ZN A 303 O HOH A 408 1555 1555 1.89 SITE 1 AC1 16 TYR A 32 TRP A 38 ASP A 109 HIS A 110 SITE 2 AC1 16 PHE A 145 ILE A 149 HIS A 181 SER A 206 SITE 3 AC1 16 SER A 208 HIS A 246 ZN A 302 ZN A 303 SITE 4 AC1 16 HOH A 408 HOH A 445 HOH A 463 HOH A 569 SITE 1 AC2 6 ASP A 109 HIS A 110 HIS A 246 HIW A 301 SITE 2 AC2 6 ZN A 303 HOH A 408 SITE 1 AC3 6 HIS A 105 HIS A 107 HIS A 181 HIW A 301 SITE 2 AC3 6 ZN A 302 HOH A 408 CRYST1 104.835 104.835 98.627 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009539 0.005507 0.000000 0.00000 SCALE2 0.000000 0.011014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010139 0.00000