HEADER HYDROLASE 11-SEP-19 6UAS TITLE CRYSTAL STRUCTURE OF A GH128 (SUBGROUP I) ENDO-BETA-1,3-GLUCANASE TITLE 2 (E199A MUTANT) FROM AMYCOLATOPSIS MEDITERRANEI (AMGH128_I) IN COMPLEX TITLE 3 WITH LAMINARIPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS MEDITERRANEI; SOURCE 3 ORGANISM_TAXID: 33910; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, CARBOHYDRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.VIEIRA,L.CABRAL,P.A.C.R.COSTA,C.R.SANTOS,M.T.MURAKAMI REVDAT 5 11-OCT-23 6UAS 1 HETSYN REVDAT 4 05-AUG-20 6UAS 1 JRNL REVDAT 3 29-JUL-20 6UAS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 10-JUN-20 6UAS 1 JRNL REVDAT 1 20-MAY-20 6UAS 0 JRNL AUTH C.R.SANTOS,P.A.C.R.COSTA,P.S.VIEIRA,S.E.T.GONZALEZ, JRNL AUTH 2 T.L.R.CORREA,E.A.LIMA,F.MANDELLI,R.A.S.PIROLLA, JRNL AUTH 3 M.N.DOMINGUES,L.CABRAL,M.P.MARTINS,R.L.CORDEIRO,A.T.JUNIOR, JRNL AUTH 4 B.P.SOUZA,E.T.PRATES,F.C.GOZZO,G.F.PERSINOTI,M.S.SKAF, JRNL AUTH 5 M.T.MURAKAMI JRNL TITL STRUCTURAL INSIGHTS INTO BETA-1,3-GLUCAN CLEAVAGE BY A JRNL TITL 2 GLYCOSIDE HYDROLASE FAMILY. JRNL REF NAT.CHEM.BIOL. V. 16 920 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32451508 JRNL DOI 10.1038/S41589-020-0554-5 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 17707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1949 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1716 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2670 ; 1.885 ; 1.699 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3951 ; 1.464 ; 1.616 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 7.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;33.719 ;20.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;13.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.330 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2185 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2704 -0.1953 0.0563 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0044 REMARK 3 T33: 0.0366 T12: -0.0051 REMARK 3 T13: 0.0009 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.3906 L22: 0.5261 REMARK 3 L33: 0.7403 L12: -0.1928 REMARK 3 L13: 0.0868 L23: -0.3738 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0004 S13: 0.0035 REMARK 3 S21: 0.0005 S22: 0.0052 S23: 0.0075 REMARK 3 S31: 0.0156 S32: -0.0024 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6UAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000242651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 44.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 3.890 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ZINC CHLORIDE 0.01 M PEG 6000 20% REMARK 280 SODIUM ACETATE 0.1 M, PH 3.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.67350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 MET A 27 REMARK 465 ALA A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 85 ND1 HIS A 192 1455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 85 CG ASP A 85 OD2 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TYR A 158 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 61 0.40 -65.25 REMARK 500 GLN A 108 -134.17 -124.36 REMARK 500 ALA A 132 155.67 -49.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 114 OE2 REMARK 620 2 ASP A 118 OD2 109.7 REMARK 620 3 HOH A 575 O 105.0 115.7 REMARK 620 4 HOH A 577 O 107.9 104.4 114.0 REMARK 620 N 1 2 3 DBREF 6UAS A 28 269 UNP G0FQ07 G0FQ07_AMYMS 28 269 SEQADV 6UAS MET A 7 UNP G0FQ07 INITIATING METHIONINE SEQADV 6UAS GLY A 8 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS SER A 9 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS SER A 10 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 11 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 12 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 13 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 14 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 15 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 16 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS SER A 17 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS SER A 18 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS GLY A 19 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS LEU A 20 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS VAL A 21 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS PRO A 22 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS ALA A 23 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS GLY A 24 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS SER A 25 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS HIS A 26 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS MET A 27 UNP G0FQ07 EXPRESSION TAG SEQADV 6UAS ALA A 199 UNP G0FQ07 GLU 199 ENGINEERED MUTATION SEQRES 1 A 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 263 LEU VAL PRO ALA GLY SER HIS MET ALA GLY THR LYS LYS SEQRES 3 A 263 GLY VAL SER ALA ALA ALA PHE SER GLY VAL THR ALA ALA SEQRES 4 A 263 LEU GLY ASP VAL GLY ALA ARG TRP PHE TYR THR TRP ALA SEQRES 5 A 263 ALA ASP PRO GLN GLY ILE THR ALA PRO ALA GLY THR GLU SEQRES 6 A 263 PHE VAL PRO MET ILE TRP GLY ARG ASP SER VAL THR ALA SEQRES 7 A 263 ASP GLN LEU GLN ARG ALA LYS ALA ALA GLY SER THR LEU SEQRES 8 A 263 LEU ALA PHE ASN GLU PRO ASP LEU ALA GLY GLN ALA ASN SEQRES 9 A 263 MET SER VAL GLU THR ALA LEU ASP LEU TRP PRO GLN LEU SEQRES 10 A 263 GLN ALA THR GLY MET ARG LEU GLY ALA PRO ALA VAL ALA SEQRES 11 A 263 TYR GLY GLY ASP THR PRO GLY GLY TRP LEU ASP ARG PHE SEQRES 12 A 263 MET SER GLY ALA ALA ALA ARG GLY TYR ARG VAL ASP PHE SEQRES 13 A 263 ILE PRO LEU HIS TRP TYR GLY GLY ASP PHE SER ALA ALA SEQRES 14 A 263 ALA THR GLY GLN LEU GLN SER TYR LEU GLN ALA VAL TYR SEQRES 15 A 263 ASN ARG TYR HIS ARG PRO ILE TRP LEU THR ALA TYR ALA SEQRES 16 A 263 LEU THR ASP PHE SER GLY SER THR PRO ARG TYR PRO SER SEQRES 17 A 263 ALA ALA GLU GLN ALA ASP PHE VAL SER ARG SER THR ALA SEQRES 18 A 263 MET LEU ASN GLY LEU SER PHE VAL GLU ARG TYR ALA TRP SEQRES 19 A 263 PHE SER LEU SER THR SER THR THR PRO THR GLY LEU TYR SEQRES 20 A 263 THR GLY THR THR PRO ASN SER SER GLY VAL ALA TYR ARG SEQRES 21 A 263 ALA ALA GLY HET GLC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET BGC B 5 11 HET BGC A 301 12 HET ZN A 307 1 HET PEG A 308 7 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 2 BGC 5(C6 H12 O6) FORMUL 4 ZN ZN 2+ FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *218(H2 O) HELIX 1 AA1 GLY A 41 GLY A 50 1 10 HELIX 2 AA2 GLY A 78 VAL A 82 5 5 HELIX 3 AA3 THR A 83 GLY A 94 1 12 HELIX 4 AA4 SER A 112 ALA A 125 1 14 HELIX 5 AA5 GLY A 144 GLY A 157 1 14 HELIX 6 AA6 ALA A 175 HIS A 192 1 18 HELIX 7 AA7 SER A 214 LEU A 232 1 19 HELIX 8 AA8 ASN A 259 ALA A 268 1 10 SHEET 1 AA1 6 GLU A 71 PHE A 72 0 SHEET 2 AA1 6 TRP A 53 TYR A 55 1 N PHE A 54 O GLU A 71 SHEET 3 AA1 6 LYS A 32 SER A 35 1 N VAL A 34 O TYR A 55 SHEET 4 AA1 6 VAL A 235 TRP A 240 1 O TYR A 238 N GLY A 33 SHEET 5 AA1 6 ILE A 195 LEU A 202 1 N ILE A 195 O GLU A 236 SHEET 6 AA1 6 ILE A 163 GLY A 169 1 N LEU A 165 O TRP A 196 SHEET 1 AA2 2 THR A 96 LEU A 98 0 SHEET 2 AA2 2 ARG A 129 GLY A 131 1 O GLY A 131 N LEU A 97 SHEET 1 AA3 2 TYR A 253 THR A 254 0 SHEET 2 AA3 2 THR A 257 PRO A 258 -1 O THR A 257 N THR A 254 LINK O3 GLC B 1 C1 BGC B 2 1555 1555 1.42 LINK O3 BGC B 2 C1 BGC B 3 1555 1555 1.43 LINK O3 BGC B 3 C1 BGC B 4 1555 1555 1.42 LINK O3 BGC B 4 C1 BGC B 5 1555 1555 1.45 LINK OE2 GLU A 114 ZN ZN A 307 1555 1555 1.96 LINK OD2 ASP A 118 ZN ZN A 307 1555 1555 1.92 LINK ZN ZN A 307 O HOH A 575 1555 1554 2.22 LINK ZN ZN A 307 O HOH A 577 1555 1555 2.27 CISPEP 1 PHE A 241 SER A 242 0 -7.22 CRYST1 36.680 79.347 46.152 90.00 103.11 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027263 0.000000 0.006347 0.00000 SCALE2 0.000000 0.012603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022247 0.00000