HEADER HYDROLASE 11-SEP-19 6UB4 TITLE CRYSTAL STRUCTURE (C2 FORM) OF A GH128 (SUBGROUP IV) ENDO-BETA-1,3- TITLE 2 GLUCANASE FROM LENTINULA EDODES (LEGH128_IV) IN COMPLEX WITH TITLE 3 LAMINARITRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LENTINULA EDODES; SOURCE 3 ORGANISM_COMMON: SHIITAKE MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5353; SOURCE 5 GENE: GLU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, CARBOHYDRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SANTOS,E.A.LIMA,F.MANDELLI,M.T.MURAKAMI REVDAT 5 11-OCT-23 6UB4 1 HETSYN REVDAT 4 05-AUG-20 6UB4 1 JRNL REVDAT 3 29-JUL-20 6UB4 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 10-JUN-20 6UB4 1 JRNL REVDAT 1 20-MAY-20 6UB4 0 JRNL AUTH C.R.SANTOS,P.A.C.R.COSTA,P.S.VIEIRA,S.E.T.GONZALEZ, JRNL AUTH 2 T.L.R.CORREA,E.A.LIMA,F.MANDELLI,R.A.S.PIROLLA, JRNL AUTH 3 M.N.DOMINGUES,L.CABRAL,M.P.MARTINS,R.L.CORDEIRO,A.T.JUNIOR, JRNL AUTH 4 B.P.SOUZA,E.T.PRATES,F.C.GOZZO,G.F.PERSINOTI,M.S.SKAF, JRNL AUTH 5 M.T.MURAKAMI JRNL TITL STRUCTURAL INSIGHTS INTO BETA-1,3-GLUCAN CLEAVAGE BY A JRNL TITL 2 GLYCOSIDE HYDROLASE FAMILY. JRNL REF NAT.CHEM.BIOL. V. 16 920 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32451508 JRNL DOI 10.1038/S41589-020-0554-5 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 87867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4625 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 342 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : -2.96000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4037 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3435 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5570 ; 1.693 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8025 ; 1.557 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 7.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;32.791 ;24.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;10.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;23.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4597 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 839 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7037 9.2023 15.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.0654 REMARK 3 T33: 0.0152 T12: -0.0027 REMARK 3 T13: -0.0510 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0752 L22: 1.0165 REMARK 3 L33: 0.4200 L12: 0.0340 REMARK 3 L13: 0.1276 L23: -0.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0425 S13: 0.0075 REMARK 3 S21: -0.3105 S22: -0.0093 S23: 0.0373 REMARK 3 S31: 0.0073 S32: -0.0123 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8591 0.2163 48.4098 REMARK 3 T TENSOR REMARK 3 T11: 0.0021 T22: 0.0882 REMARK 3 T33: 0.1367 T12: 0.0056 REMARK 3 T13: -0.0089 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3158 L22: 0.3288 REMARK 3 L33: 0.0118 L12: 0.0256 REMARK 3 L13: 0.0052 L23: -0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0085 S13: -0.0169 REMARK 3 S21: 0.0052 S22: -0.0002 S23: 0.0370 REMARK 3 S31: -0.0011 S32: 0.0099 S33: -0.0045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6UB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000242401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03316 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.4 M 10% DIOXANE MMT REMARK 280 0.1 M, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.38750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.38750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 ARG B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 HIS B 17 REMARK 465 MET B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 254 C THR A 254 O 0.127 REMARK 500 GLU B 174 CD GLU B 174 OE1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 138.08 -174.89 REMARK 500 SER A 100 -144.15 -109.72 REMARK 500 ASP B 77 138.80 -170.70 REMARK 500 SER B 100 -149.47 -108.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 662 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 664 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 873 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 874 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 875 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 876 DISTANCE = 7.76 ANGSTROMS DBREF 6UB4 A 21 267 UNP G9M5R4 G9M5R4_LENED 21 267 DBREF 6UB4 B 21 267 UNP G9M5R4 G9M5R4_LENED 21 267 SEQADV 6UB4 MET A -2 UNP G9M5R4 INITIATING METHIONINE SEQADV 6UB4 GLY A -1 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 0 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 1 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 2 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 3 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 4 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 5 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 6 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 7 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 8 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 9 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 GLY A 10 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 LEU A 11 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 VAL A 12 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 PRO A 13 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 ARG A 14 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 GLY A 15 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 16 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS A 17 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 MET A 18 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 ALA A 19 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER A 20 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 MET B -2 UNP G9M5R4 INITIATING METHIONINE SEQADV 6UB4 GLY B -1 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 0 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 1 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 2 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 3 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 4 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 5 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 6 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 7 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 8 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 9 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 GLY B 10 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 LEU B 11 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 VAL B 12 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 PRO B 13 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 ARG B 14 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 GLY B 15 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 16 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 HIS B 17 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 MET B 18 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 ALA B 19 UNP G9M5R4 EXPRESSION TAG SEQADV 6UB4 SER B 20 UNP G9M5R4 EXPRESSION TAG SEQRES 1 A 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 270 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LYS ARG SEQRES 3 A 270 GLY LEU ALA TRP PRO TRP TYR ASN SER PRO LEU ASP PRO SEQRES 4 A 270 GLY VAL LEU ASN ASN GLY ASP GLY GLU VAL VAL ALA ILE SEQRES 5 A 270 TYR ASP TRP GLU THR TYR ALA PRO PRO THR SER THR GLY SEQRES 6 A 270 GLY THR GLY GLY LEU GLY PHE ILE GLY MET GLN GLY THR SEQRES 7 A 270 MET ASP SER ASP SER SER PRO VAL ALA GLN LEU ALA THR SEQRES 8 A 270 ARG GLN ALA GLN GLN GLY TRP ALA THR VAL PHE SER LEU SEQRES 9 A 270 ASN GLU PRO ASP ILE ASN GLY ILE THR PRO ALA GLU ALA SEQRES 10 A 270 ALA SER TRP TYR ILE GLU TRP VAL ASN PRO LEU ALA ILE SEQRES 11 A 270 LYS LYS ALA LEU PRO ALA VAL THR SER SER THR THR SER SEQRES 12 A 270 GLY GLN GLY LEU SER TRP LEU SER GLU MET ILE SER ALA SEQRES 13 A 270 CYS ALA GLY ALA CYS TYR PHE ASP TYR ILE ASN LEU HIS SEQRES 14 A 270 TRP TYR GLY THR SER PHE ALA GLU PHE GLN ALA TYR ILE SEQRES 15 A 270 GLU GLN ALA HIS ASN GLN PHE PRO SER TYR THR ILE VAL SEQRES 16 A 270 ILE SER GLU PHE ALA LEU THR ASN GLY GLY ASN GLN VAL SEQRES 17 A 270 ALA PHE PHE GLU SER ALA PHE PRO PHE LEU ASP GLY LEU SEQRES 18 A 270 SER TYR VAL LEU LEU TYR PHE PRO PHE VAL ALA THR SER SEQRES 19 A 270 PRO ALA LEU LEU GLN ALA ASN ASP PRO GLY ALA VAL THR SEQRES 20 A 270 THR VAL GLY THR GLY SER CYS LEU TYR THR ASN ALA GLY SEQRES 21 A 270 GLY PRO SER SER VAL GLY ASN LEU MET TYR SEQRES 1 B 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 270 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LYS ARG SEQRES 3 B 270 GLY LEU ALA TRP PRO TRP TYR ASN SER PRO LEU ASP PRO SEQRES 4 B 270 GLY VAL LEU ASN ASN GLY ASP GLY GLU VAL VAL ALA ILE SEQRES 5 B 270 TYR ASP TRP GLU THR TYR ALA PRO PRO THR SER THR GLY SEQRES 6 B 270 GLY THR GLY GLY LEU GLY PHE ILE GLY MET GLN GLY THR SEQRES 7 B 270 MET ASP SER ASP SER SER PRO VAL ALA GLN LEU ALA THR SEQRES 8 B 270 ARG GLN ALA GLN GLN GLY TRP ALA THR VAL PHE SER LEU SEQRES 9 B 270 ASN GLU PRO ASP ILE ASN GLY ILE THR PRO ALA GLU ALA SEQRES 10 B 270 ALA SER TRP TYR ILE GLU TRP VAL ASN PRO LEU ALA ILE SEQRES 11 B 270 LYS LYS ALA LEU PRO ALA VAL THR SER SER THR THR SER SEQRES 12 B 270 GLY GLN GLY LEU SER TRP LEU SER GLU MET ILE SER ALA SEQRES 13 B 270 CYS ALA GLY ALA CYS TYR PHE ASP TYR ILE ASN LEU HIS SEQRES 14 B 270 TRP TYR GLY THR SER PHE ALA GLU PHE GLN ALA TYR ILE SEQRES 15 B 270 GLU GLN ALA HIS ASN GLN PHE PRO SER TYR THR ILE VAL SEQRES 16 B 270 ILE SER GLU PHE ALA LEU THR ASN GLY GLY ASN GLN VAL SEQRES 17 B 270 ALA PHE PHE GLU SER ALA PHE PRO PHE LEU ASP GLY LEU SEQRES 18 B 270 SER TYR VAL LEU LEU TYR PHE PRO PHE VAL ALA THR SER SEQRES 19 B 270 PRO ALA LEU LEU GLN ALA ASN ASP PRO GLY ALA VAL THR SEQRES 20 B 270 THR VAL GLY THR GLY SER CYS LEU TYR THR ASN ALA GLY SEQRES 21 B 270 GLY PRO SER SER VAL GLY ASN LEU MET TYR HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC E 1 12 HET BGC E 2 11 HET CL A 306 1 HET CL B 403 1 HET MES B 404 12 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 BGC 7(C6 H12 O6) FORMUL 6 CL 2(CL 1-) FORMUL 8 MES C6 H13 N O4 S FORMUL 9 HOH *640(H2 O) HELIX 1 AA1 ASP A 35 ASN A 40 5 6 HELIX 2 AA2 PRO A 82 ALA A 84 5 3 HELIX 3 AA3 GLN A 85 GLY A 94 1 10 HELIX 4 AA4 THR A 110 VAL A 122 1 13 HELIX 5 AA5 GLN A 142 ALA A 155 1 14 HELIX 6 AA6 SER A 171 PHE A 186 1 16 HELIX 7 AA7 ASN A 203 LEU A 218 1 16 HELIX 8 AA8 SER A 231 ASP A 239 1 9 HELIX 9 AA9 ASP A 239 GLY A 247 1 9 HELIX 10 AB1 SER A 260 TYR A 267 1 8 HELIX 11 AB2 ASP B 35 ASN B 40 5 6 HELIX 12 AB3 PRO B 82 ALA B 84 5 3 HELIX 13 AB4 GLN B 85 GLY B 94 1 10 HELIX 14 AB5 GLU B 103 ASN B 107 5 5 HELIX 15 AB6 THR B 110 VAL B 122 1 13 HELIX 16 AB7 GLN B 142 ALA B 155 1 14 HELIX 17 AB8 SER B 171 PHE B 186 1 16 HELIX 18 AB9 ASN B 203 GLY B 217 1 15 HELIX 19 AC1 SER B 231 ASP B 239 1 9 HELIX 20 AC2 ASP B 239 GLY B 247 1 9 HELIX 21 AC3 VAL B 262 TYR B 267 5 6 SHEET 1 AA1 3 ARG A 23 ALA A 26 0 SHEET 2 AA1 3 VAL A 46 TYR A 50 1 O VAL A 47 N ARG A 23 SHEET 3 AA1 3 GLY A 68 PHE A 69 1 O GLY A 68 N VAL A 47 SHEET 1 AA2 6 GLY A 71 MET A 72 0 SHEET 2 AA2 6 THR A 97 PHE A 99 1 O PHE A 99 N GLY A 71 SHEET 3 AA2 6 LYS A 128 VAL A 134 1 O LYS A 128 N VAL A 98 SHEET 4 AA2 6 TYR A 162 GLY A 169 1 O TYR A 162 N LEU A 131 SHEET 5 AA2 6 THR A 190 LEU A 198 1 O VAL A 192 N ILE A 163 SHEET 6 AA2 6 VAL A 221 PRO A 226 1 O PHE A 225 N ILE A 193 SHEET 1 AA3 3 ARG B 23 ALA B 26 0 SHEET 2 AA3 3 VAL B 46 TYR B 50 1 O VAL B 47 N ARG B 23 SHEET 3 AA3 3 GLY B 68 PHE B 69 1 O GLY B 68 N ILE B 49 SHEET 1 AA4 6 GLY B 71 MET B 72 0 SHEET 2 AA4 6 THR B 97 PHE B 99 1 O PHE B 99 N GLY B 71 SHEET 3 AA4 6 LYS B 128 VAL B 134 1 O ALA B 130 N VAL B 98 SHEET 4 AA4 6 TYR B 162 GLY B 169 1 O TYR B 162 N LEU B 131 SHEET 5 AA4 6 THR B 190 LEU B 198 1 O VAL B 192 N LEU B 165 SHEET 6 AA4 6 VAL B 221 PRO B 226 1 O LEU B 223 N ILE B 193 SSBOND 1 CYS A 154 CYS A 158 1555 1555 2.06 SSBOND 2 CYS B 154 CYS B 158 1555 1555 2.06 LINK O3 BGC C 1 C1 BGC C 2 1555 1555 1.44 LINK O3 BGC C 2 C1 BGC C 3 1555 1555 1.46 LINK O3 BGC D 1 C1 BGC D 2 1555 1555 1.44 LINK O3 BGC E 1 C1 BGC E 2 1555 1555 1.45 CISPEP 1 PHE A 227 VAL A 228 0 22.01 CISPEP 2 PHE B 227 VAL B 228 0 24.57 CRYST1 156.775 46.520 114.786 90.00 119.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006379 0.000000 0.003609 0.00000 SCALE2 0.000000 0.021496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010010 0.00000