HEADER HYDROLASE 11-SEP-19 6UBC TITLE CRYSTAL STRUCTURE OF A GH128 (SUBGROUP VII) OLIGOSACCHARIDE-BINDING TITLE 2 PROTEIN FROM CRYPTOCOCCUS NEOFORMANS (CNGH128_VII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCO_HYDRO_CC DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS; SOURCE 3 ORGANISM_TAXID: 5207; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, CARBOHYDRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SANTOS,P.A.C.R.COSTA,B.P.SOUZA,P.S.VIEIRA,M.T.MURAKAMI REVDAT 4 23-OCT-24 6UBC 1 REMARK REVDAT 3 05-AUG-20 6UBC 1 JRNL REVDAT 2 10-JUN-20 6UBC 1 JRNL REVDAT 1 20-MAY-20 6UBC 0 JRNL AUTH C.R.SANTOS,P.A.C.R.COSTA,P.S.VIEIRA,S.E.T.GONZALEZ, JRNL AUTH 2 T.L.R.CORREA,E.A.LIMA,F.MANDELLI,R.A.S.PIROLLA, JRNL AUTH 3 M.N.DOMINGUES,L.CABRAL,M.P.MARTINS,R.L.CORDEIRO,A.T.JUNIOR, JRNL AUTH 4 B.P.SOUZA,E.T.PRATES,F.C.GOZZO,G.F.PERSINOTI,M.S.SKAF, JRNL AUTH 5 M.T.MURAKAMI JRNL TITL STRUCTURAL INSIGHTS INTO BETA-1,3-GLUCAN CLEAVAGE BY A JRNL TITL 2 GLYCOSIDE HYDROLASE FAMILY. JRNL REF NAT.CHEM.BIOL. V. 16 920 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32451508 JRNL DOI 10.1038/S41589-020-0554-5 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2002 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1670 ; 0.038 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2741 ; 1.826 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3906 ; 2.503 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;34.600 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 285 ;13.334 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;13.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2291 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.023 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 1.878 ; 2.820 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1021 ; 1.874 ; 2.819 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 2.608 ; 4.215 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000242415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979460 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 40.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 16.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE 0.1 M AMMONIUM SULFATE REMARK 280 2.0 M, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 59.20500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 59.20500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 59.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 LEU A 23 REMARK 465 HIS A 24 REMARK 465 PRO A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 HIS A 30 REMARK 465 ARG A 31 REMARK 465 ARG A 32 REMARK 465 GLN A 33 REMARK 465 ASP A 34 REMARK 465 ILE A 35 REMARK 465 THR A 36 REMARK 465 HIS A 37 REMARK 465 GLU A 38 REMARK 465 ARG A 39 REMARK 465 VAL A 40 REMARK 465 ASN A 41 REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 VAL A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ARG A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 ALA A 51 REMARK 465 GLN A 52 REMARK 465 SER A 53 REMARK 465 GLN A 54 REMARK 465 PRO A 55 REMARK 465 ARG A 56 REMARK 465 ALA A 57 REMARK 465 LEU A 58 REMARK 465 SER A 59 REMARK 465 GLU A 60 REMARK 465 LYS A 61 REMARK 465 PRO A 62 REMARK 465 ASN A 63 REMARK 465 LYS A 64 REMARK 465 ARG A 65 REMARK 465 LYS A 66 REMARK 465 ILE A 67 REMARK 465 THR A 68 REMARK 465 ARG A 69 REMARK 465 ARG A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 ARG A 73 REMARK 465 SER A 74 REMARK 465 CYS A 75 REMARK 465 ARG A 76 REMARK 465 ALA A 77 REMARK 465 ARG A 78 REMARK 465 ASN A 79 REMARK 465 SER A 80 REMARK 465 THR A 81 REMARK 465 ALA A 82 REMARK 465 THR A 83 REMARK 465 ALA A 84 REMARK 465 SER A 85 REMARK 465 ASP A 86 REMARK 465 SER A 87 REMARK 465 ALA A 88 REMARK 465 THR A 89 REMARK 465 ALA A 90 REMARK 465 SER A 91 REMARK 465 THR A 92 REMARK 465 PRO A 93 REMARK 465 SER A 94 REMARK 465 GLN A 95 REMARK 465 ASN A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 ALA A 99 REMARK 465 ALA A 100 REMARK 465 LEU A 101 REMARK 465 PRO A 102 REMARK 465 ASP A 103 REMARK 465 SER A 104 REMARK 465 THR A 105 REMARK 465 ASP A 106 REMARK 465 SER A 107 REMARK 465 TYR A 108 REMARK 465 VAL A 109 REMARK 465 ALA A 110 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 VAL A 113 REMARK 465 SER A 114 REMARK 465 SER A 115 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 GLU A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 465 THR A 123 REMARK 465 GLN A 124 REMARK 465 ALA A 125 REMARK 465 PRO A 126 REMARK 465 VAL A 127 REMARK 465 GLU A 128 REMARK 465 ASN A 129 REMARK 465 THR A 130 REMARK 465 SER A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 GLU A 135 REMARK 465 ASP A 136 REMARK 465 VAL A 137 REMARK 465 ALA A 138 REMARK 465 ALA A 139 REMARK 465 THR A 140 REMARK 465 THR A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 ILE A 144 REMARK 465 GLU A 145 REMARK 465 ASN A 146 REMARK 465 ILE A 147 REMARK 465 ALA A 148 REMARK 465 ALA A 149 REMARK 465 LEU A 150 REMARK 465 GLN A 151 REMARK 465 GLN A 152 REMARK 465 PRO A 153 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 SER A 158 REMARK 465 ALA A 159 REMARK 465 GLU A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 SER A 163 REMARK 465 THR A 164 REMARK 465 ALA A 165 REMARK 465 ALA A 166 REMARK 465 ASN A 167 REMARK 465 SER A 168 REMARK 465 THR A 169 REMARK 465 SER A 170 REMARK 465 VAL A 171 REMARK 465 ALA A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 ALA A 176 REMARK 465 THR A 177 REMARK 465 SER A 178 REMARK 465 SER A 179 REMARK 465 ALA A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 THR A 183 REMARK 465 SER A 187 REMARK 465 SER A 188 REMARK 465 SER A 189 REMARK 465 SER A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 223 18.78 -140.36 REMARK 500 TRP A 224 -6.58 74.99 REMARK 500 ASP A 248 176.08 177.87 REMARK 500 GLN A 315 -131.00 55.50 REMARK 500 ASP A 378 -116.68 -124.52 REMARK 500 REMARK 500 REMARK: NULL DBREF 6UBC A 21 443 UNP J9VNP7 J9VNP7_CRYNH 21 443 SEQADV 6UBC MET A 0 UNP J9VNP7 INITIATING METHIONINE SEQADV 6UBC GLY A 1 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC SER A 2 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC SER A 3 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 4 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 5 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 6 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 7 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 8 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 9 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC SER A 10 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC SER A 11 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC GLY A 12 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC LEU A 13 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC VAL A 14 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC PRO A 15 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC ALA A 16 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC GLY A 17 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC SER A 18 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC HIS A 19 UNP J9VNP7 EXPRESSION TAG SEQADV 6UBC MET A 20 UNP J9VNP7 EXPRESSION TAG SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ALA GLY SER HIS MET SER SER LEU HIS PRO SEQRES 3 A 444 ASN ALA ALA ALA HIS ARG ARG GLN ASP ILE THR HIS GLU SEQRES 4 A 444 ARG VAL ASN SER ALA VAL GLU ARG ARG GLU THR LEU ALA SEQRES 5 A 444 GLN SER GLN PRO ARG ALA LEU SER GLU LYS PRO ASN LYS SEQRES 6 A 444 ARG LYS ILE THR ARG ARG GLY GLY ARG SER CYS ARG ALA SEQRES 7 A 444 ARG ASN SER THR ALA THR ALA SER ASP SER ALA THR ALA SEQRES 8 A 444 SER THR PRO SER GLN ASN SER THR ALA ALA LEU PRO ASP SEQRES 9 A 444 SER THR ASP SER TYR VAL ALA SER ALA VAL SER SER GLY SEQRES 10 A 444 ALA GLU SER SER SER SER THR GLN ALA PRO VAL GLU ASN SEQRES 11 A 444 THR SER SER SER SER GLU ASP VAL ALA ALA THR THR SER SEQRES 12 A 444 SER ILE GLU ASN ILE ALA ALA LEU GLN GLN PRO SER SER SEQRES 13 A 444 SER SER SER ALA GLU ASP SER SER THR ALA ALA ASN SER SEQRES 14 A 444 THR SER VAL ALA SER ALA ALA ALA THR SER SER ALA ALA SEQRES 15 A 444 ALA THR SER SER SER SER SER SER SER ASN SER THR GLY SEQRES 16 A 444 SER TYR THR PRO ASN GLY ILE LYS ALA GLY VAL SER GLY SEQRES 17 A 444 ASP ASP PRO LEU SER PHE LEU GLN GLY HIS ILE GLY TRP SEQRES 18 A 444 TYR TYR ASP TRP ASN ALA THR PRO SER GLY SER ALA SER SEQRES 19 A 444 GLY ALA SER ALA VAL ASN MET LEU TRP GLY ALA GLY THR SEQRES 20 A 444 VAL ASP SER THR ASP ALA SER ARG LEU SER ALA PHE LYS SEQRES 21 A 444 ALA LEU THR THR ALA PRO GLN TYR ILE ILE GLY PHE GLU SEQRES 22 A 444 GLU PRO ASP CYS SER THR PRO GLY SER SER ASN ILE ALA SEQRES 23 A 444 VAL ALA ASP ALA ALA SER LEU TRP ASP SER THR ILE ALA SEQRES 24 A 444 PRO TRP LYS ASP GLN GLY SER ILE LEU ILE SER PRO SER SEQRES 25 A 444 MET CYS HIS GLN ALA ALA GLU GLU TYR THR LYS TRP LEU SEQRES 26 A 444 SER ALA PHE SER SER GLN ILE SER THR SER TRP ASP ILE SEQRES 27 A 444 THR ASN LEU HIS ILE ASN LYS ASN SER MET ASP GLY VAL SEQRES 28 A 444 LYS THR ASP ILE ASP TYR TYR TYR ASN THR TYR GLY LYS SEQRES 29 A 444 PRO ILE TRP VAL THR GLU PHE ALA CYS VAL ASP ASP SER SEQRES 30 A 444 THR ASP PHE VAL PRO CYS THR ASP GLN SER GLU ILE ASN SEQRES 31 A 444 THR PHE ILE ASN ASP ILE VAL ALA LEU PHE GLU SER ASP SEQRES 32 A 444 ASP ARG VAL GLN ALA TYR ALA TYR SER THR GLY GLU GLY SEQRES 33 A 444 LEU SER PRO GLU TRP ASP MET ILE SER ASN GLY ALA LEU SEQRES 34 A 444 THR GLU SER GLY GLN THR TYR LEU THR ALA ILE SER GLN SEQRES 35 A 444 TYR HIS FORMUL 2 HOH *298(H2 O) HELIX 1 AA1 THR A 197 ILE A 201 5 5 HELIX 2 AA2 PRO A 210 GLN A 215 1 6 HELIX 3 AA3 ASP A 248 ALA A 260 1 13 HELIX 4 AA4 ALA A 285 ILE A 297 1 13 HELIX 5 AA5 ALA A 298 GLY A 304 5 7 HELIX 6 AA6 HIS A 314 ALA A 316 5 3 HELIX 7 AA7 ALA A 317 LYS A 322 1 6 HELIX 8 AA8 LYS A 322 ILE A 331 1 10 HELIX 9 AA9 SER A 346 GLY A 362 1 17 HELIX 10 AB1 ASP A 384 ASP A 402 1 19 HELIX 11 AB2 SER A 417 ASP A 421 5 5 HELIX 12 AB3 THR A 429 GLN A 441 1 13 SHEET 1 AA1 6 SER A 236 ALA A 237 0 SHEET 2 AA1 6 TRP A 220 TYR A 222 1 N TYR A 221 O SER A 236 SHEET 3 AA1 6 ALA A 203 SER A 206 1 N VAL A 205 O TYR A 222 SHEET 4 AA1 6 VAL A 405 TYR A 410 1 O TYR A 408 N GLY A 204 SHEET 5 AA1 6 ILE A 365 ASP A 374 1 N ILE A 365 O GLN A 406 SHEET 6 AA1 6 THR A 338 LYS A 344 1 N LEU A 340 O TRP A 366 SHEET 1 AA2 6 SER A 236 ALA A 237 0 SHEET 2 AA2 6 TRP A 220 TYR A 222 1 N TYR A 221 O SER A 236 SHEET 3 AA2 6 ALA A 203 SER A 206 1 N VAL A 205 O TYR A 222 SHEET 4 AA2 6 VAL A 405 TYR A 410 1 O TYR A 408 N GLY A 204 SHEET 5 AA2 6 ILE A 365 ASP A 374 1 N ILE A 365 O GLN A 406 SHEET 6 AA2 6 VAL A 380 PRO A 381 -1 O VAL A 380 N ASP A 374 SHEET 1 AA3 3 ASN A 239 MET A 240 0 SHEET 2 AA3 3 TYR A 267 ILE A 269 1 O ILE A 269 N ASN A 239 SHEET 3 AA3 3 ILE A 306 ILE A 308 1 O ILE A 308 N ILE A 268 SHEET 1 AA4 2 ILE A 423 SER A 424 0 SHEET 2 AA4 2 ALA A 427 LEU A 428 -1 O ALA A 427 N SER A 424 SSBOND 1 CYS A 276 CYS A 313 1555 1555 2.07 SSBOND 2 CYS A 372 CYS A 382 1555 1555 2.18 CRYST1 118.410 118.410 118.410 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008445 0.00000