HEADER TRANSCRIPTION 17-SEP-19 6UCS
TITLE DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF POTENT AND SELECTIVE
TITLE 2 WDR5 INHIBITORS CONTAINING A DIHYDROISOQUINOLINONE BICYCLIC CORE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: WDR5, BIG3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333
KEYWDS WDR5, STRUCTURE-BASED DESIGN, MIXED-LINEAGE LEUKEMIA, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR B.ZHAO
REVDAT 5 15-MAY-24 6UCS 1 COMPND HETNAM FORMUL
REVDAT 4 11-OCT-23 6UCS 1 REMARK
REVDAT 3 05-FEB-20 6UCS 1 JRNL
REVDAT 2 15-JAN-20 6UCS 1 JRNL
REVDAT 1 01-JAN-20 6UCS 0
JRNL AUTH J.TIAN,K.B.TEUSCHER,E.R.AHO,J.R.ALVARADO,J.J.MILLS,
JRNL AUTH 2 K.M.MEYERS,R.D.GOGLIOTTI,C.HAN,J.D.MACDONALD,J.SAI,J.G.SHAW,
JRNL AUTH 3 J.L.SENSINTAFFAR,B.ZHAO,T.A.RIETZ,L.R.THOMAS,W.G.PAYNE,
JRNL AUTH 4 W.J.MOORE,G.M.STOTT,J.KONDO,M.INOUE,R.J.COFFEY,W.P.TANSEY,
JRNL AUTH 5 S.R.STAUFFER,T.LEE,S.W.FESIK
JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF POTENT AND
JRNL TITL 2 SELECTIVE WD REPEAT DOMAIN 5 (WDR5) INHIBITORS CONTAINING A
JRNL TITL 3 DIHYDROISOQUINOLINONE BICYCLIC CORE.
JRNL REF J.MED.CHEM. V. 63 656 2020
JRNL REFN ISSN 0022-2623
JRNL PMID 31858797
JRNL DOI 10.1021/ACS.JMEDCHEM.9B01608
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.12_2829
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.24
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6
REMARK 3 NUMBER OF REFLECTIONS : 44070
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.168
REMARK 3 R VALUE (WORKING SET) : 0.167
REMARK 3 FREE R VALUE : 0.194
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.570
REMARK 3 FREE R VALUE TEST SET COUNT : 2013
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 28.2400 - 4.4540 0.98 3220 146 0.1651 0.1679
REMARK 3 2 4.4540 - 3.5374 0.97 3176 158 0.1409 0.1632
REMARK 3 3 3.5374 - 3.0909 0.96 3114 154 0.1492 0.1704
REMARK 3 4 3.0909 - 2.8086 0.94 3104 158 0.1698 0.2028
REMARK 3 5 2.8086 - 2.6074 0.94 3064 151 0.1696 0.2251
REMARK 3 6 2.6074 - 2.4538 0.94 3068 142 0.1752 0.1978
REMARK 3 7 2.4538 - 2.3310 0.93 3066 136 0.1747 0.1864
REMARK 3 8 2.3310 - 2.2295 0.91 2974 144 0.1760 0.2204
REMARK 3 9 2.2295 - 2.1437 0.91 2993 139 0.1703 0.2051
REMARK 3 10 2.1437 - 2.0698 0.90 2973 142 0.1698 0.1963
REMARK 3 11 2.0698 - 2.0051 0.89 2939 140 0.1796 0.2615
REMARK 3 12 2.0051 - 1.9478 0.88 2823 139 0.1940 0.2482
REMARK 3 13 1.9478 - 1.8965 0.88 2897 144 0.2010 0.2337
REMARK 3 14 1.8965 - 1.8503 0.81 2646 120 0.2181 0.2319
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.770
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 4942
REMARK 3 ANGLE : 1.001 6735
REMARK 3 CHIRALITY : 0.112 756
REMARK 3 PLANARITY : 0.006 837
REMARK 3 DIHEDRAL : 7.565 3896
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 167 )
REMARK 3 ORIGIN FOR THE GROUP (A): -15.2010 24.0020 -1.4552
REMARK 3 T TENSOR
REMARK 3 T11: 0.1114 T22: 0.1165
REMARK 3 T33: 0.1229 T12: -0.0441
REMARK 3 T13: -0.0023 T23: -0.0147
REMARK 3 L TENSOR
REMARK 3 L11: 1.0166 L22: 0.6195
REMARK 3 L33: 0.9166 L12: -0.1657
REMARK 3 L13: -0.1619 L23: 0.0392
REMARK 3 S TENSOR
REMARK 3 S11: 0.0110 S12: 0.0731 S13: -0.1092
REMARK 3 S21: -0.0751 S22: 0.0011 S23: 0.0226
REMARK 3 S31: 0.0364 S32: -0.0301 S33: -0.0164
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 233 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.3030 35.0453 0.3408
REMARK 3 T TENSOR
REMARK 3 T11: 0.1284 T22: 0.1841
REMARK 3 T33: 0.1729 T12: -0.0468
REMARK 3 T13: 0.0020 T23: -0.0010
REMARK 3 L TENSOR
REMARK 3 L11: 2.3620 L22: 1.4623
REMARK 3 L33: 1.9315 L12: -0.9807
REMARK 3 L13: -0.8084 L23: -0.1735
REMARK 3 S TENSOR
REMARK 3 S11: 0.0983 S12: 0.0434 S13: 0.1887
REMARK 3 S21: -0.0733 S22: -0.0625 S23: -0.2830
REMARK 3 S31: -0.2100 S32: 0.1644 S33: -0.0481
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 334 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.3090 41.9839 -6.2532
REMARK 3 T TENSOR
REMARK 3 T11: 0.1466 T22: 0.1226
REMARK 3 T33: 0.1570 T12: 0.0155
REMARK 3 T13: 0.0004 T23: 0.0239
REMARK 3 L TENSOR
REMARK 3 L11: 1.8076 L22: 1.8783
REMARK 3 L33: 1.9413 L12: 0.2613
REMARK 3 L13: -0.3366 L23: -0.0913
REMARK 3 S TENSOR
REMARK 3 S11: 0.0643 S12: 0.0892 S13: 0.2117
REMARK 3 S21: -0.0460 S22: -0.0566 S23: -0.1130
REMARK 3 S31: -0.1412 S32: 0.0009 S33: -0.0189
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 179 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.8291 38.1142 -37.4965
REMARK 3 T TENSOR
REMARK 3 T11: 0.1683 T22: 0.1602
REMARK 3 T33: 0.1366 T12: 0.0281
REMARK 3 T13: -0.0236 T23: -0.0172
REMARK 3 L TENSOR
REMARK 3 L11: 1.3055 L22: 0.6169
REMARK 3 L33: 1.2414 L12: 0.2036
REMARK 3 L13: -0.3578 L23: -0.1770
REMARK 3 S TENSOR
REMARK 3 S11: -0.0305 S12: -0.0880 S13: 0.1578
REMARK 3 S21: 0.0833 S22: 0.0638 S23: -0.0040
REMARK 3 S31: -0.1298 S32: -0.0804 S33: -0.0400
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 233 )
REMARK 3 ORIGIN FOR THE GROUP (A): 23.1181 26.1295 -36.3495
REMARK 3 T TENSOR
REMARK 3 T11: 0.1521 T22: 0.2355
REMARK 3 T33: 0.1619 T12: 0.0569
REMARK 3 T13: -0.0132 T23: 0.0085
REMARK 3 L TENSOR
REMARK 3 L11: 2.8653 L22: 1.9459
REMARK 3 L33: 1.6190 L12: 1.3243
REMARK 3 L13: -0.2178 L23: -0.4577
REMARK 3 S TENSOR
REMARK 3 S11: -0.0189 S12: -0.4141 S13: -0.2352
REMARK 3 S21: 0.1297 S22: -0.0846 S23: -0.2700
REMARK 3 S31: 0.1544 S32: 0.1976 S33: 0.0961
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 334 )
REMARK 3 ORIGIN FOR THE GROUP (A): 6.5350 19.8591 -31.2473
REMARK 3 T TENSOR
REMARK 3 T11: 0.1528 T22: 0.1419
REMARK 3 T33: 0.1322 T12: -0.0151
REMARK 3 T13: 0.0032 T23: 0.0021
REMARK 3 L TENSOR
REMARK 3 L11: 1.5905 L22: 1.9986
REMARK 3 L33: 2.2819 L12: -0.1934
REMARK 3 L13: -0.5286 L23: -0.3249
REMARK 3 S TENSOR
REMARK 3 S11: -0.0748 S12: -0.0210 S13: -0.1335
REMARK 3 S21: -0.0066 S22: 0.0329 S23: -0.0669
REMARK 3 S31: 0.1700 S32: -0.0141 S33: 0.0496
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : 1
REMARK 3 NCS GROUP : 1
REMARK 3 NCS OPERATOR : 1
REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 31 AND (NAME N OR
REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))
REMARK 3 OR RESID 32 THROUGH 90 OR RESID 92
REMARK 3 THROUGH 96 OR RESID 98 THROUGH 109 OR
REMARK 3 RESID 111 THROUGH 119 OR (RESID 120 AND
REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR
REMARK 3 NAME CB )) OR RESID 121 THROUGH 153 OR
REMARK 3 RESID 155 THROUGH 210 OR RESID 214
REMARK 3 THROUGH 334))
REMARK 3 SELECTION : (CHAIN B AND ((RESID 31 AND (NAME N OR
REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))
REMARK 3 OR RESID 32 THROUGH 90 OR RESID 92
REMARK 3 THROUGH 96 OR RESID 98 THROUGH 108 OR
REMARK 3 (RESID 109 AND (NAME N OR NAME CA OR NAME
REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME
REMARK 3 CD OR NAME CE )) OR RESID 111 THROUGH 153
REMARK 3 OR RESID 155 THROUGH 158 OR (RESID 159
REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME
REMARK 3 O OR NAME CB )) OR RESID 160 THROUGH 161
REMARK 3 OR (RESID 162 AND (NAME N OR NAME CA OR
REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID
REMARK 3 163 THROUGH 334))
REMARK 3 ATOM PAIRS NUMBER : 2644
REMARK 3 RMSD : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6UCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-19.
REMARK 100 THE DEPOSITION ID IS D_1000244383.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-JAN-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.987
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44095
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 200 DATA REDUNDANCY : 2.300
REMARK 200 R MERGE (I) : 0.05700
REMARK 200 R SYM (I) : 0.06600
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88
REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0
REMARK 200 DATA REDUNDANCY IN SHELL : 1.90
REMARK 200 R MERGE FOR SHELL (I) : 0.35200
REMARK 200 R SYM FOR SHELL (I) : 0.25300
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6DY7
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.66
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, AMMONIUM ACETATE, PEG 3350,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 22
REMARK 465 ASP A 211
REMARK 465 ASP A 212
REMARK 465 ASP A 213
REMARK 465 SER B 22
REMARK 465 ALA B 23
REMARK 465 PRO B 28
REMARK 465 THR B 29
REMARK 465 PRO B 30
REMARK 465 ASP B 211
REMARK 465 ASP B 212
REMARK 465 ASP B 213
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 26 CB OG
REMARK 470 LYS A 27 CG CD CE NZ
REMARK 470 PRO A 28 CB CG CD
REMARK 470 THR A 29 OG1 CG2
REMARK 470 LYS A 32 NZ
REMARK 470 LYS A 78 CG CD CE NZ
REMARK 470 LYS A 87 CE NZ
REMARK 470 LYS A 109 NZ
REMARK 470 LYS A 159 CG CD CE NZ
REMARK 470 LYS A 162 CG CD CE NZ
REMARK 470 LYS A 207 CE NZ
REMARK 470 ILE A 210 CG1 CG2 CD1
REMARK 470 ASN A 214 CG OD1 ND2
REMARK 470 LYS A 227 CG CD CE NZ
REMARK 470 LYS A 245 CD CE NZ
REMARK 470 LYS A 247 CG CD CE NZ
REMARK 470 LYS A 256 CD CE NZ
REMARK 470 LYS A 259 CG CD CE NZ
REMARK 470 LYS A 296 NZ
REMARK 470 VAL B 31 CB CG1 CG2
REMARK 470 LYS B 32 CG CD CE NZ
REMARK 470 LYS B 78 CG CD CE NZ
REMARK 470 LYS B 87 CE NZ
REMARK 470 LYS B 120 CG CD CE NZ
REMARK 470 GLN B 140 OE1
REMARK 470 ARG B 181 CG CD NE CZ NH1 NH2
REMARK 470 ILE B 210 CG1 CG2 CD1
REMARK 470 ASN B 214 CG OD1 ND2
REMARK 470 LYS B 227 CG CD CE NZ
REMARK 470 LYS B 245 CD CE NZ
REMARK 470 LYS B 247 CG CD CE NZ
REMARK 470 LYS B 256 NZ
REMARK 470 LYS B 259 CG CD CE NZ
REMARK 470 GLU B 292 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 234 35.39 -78.48
REMARK 500 LYS A 259 -39.57 -131.97
REMARK 500 ASP A 324 -61.44 -120.44
REMARK 500 ASN B 180 -167.57 -78.08
REMARK 500 LEU B 234 35.58 -78.02
REMARK 500 LYS B 259 -39.88 -133.44
REMARK 500 ASP B 324 -61.32 -120.01
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 721 DISTANCE = 6.24 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue Q41 A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue Q41 B 401
DBREF 6UCS A 22 334 UNP P61964 WDR5_HUMAN 22 334
DBREF 6UCS B 22 334 UNP P61964 WDR5_HUMAN 22 334
SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN
SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA
SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU
SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY
SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS
SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER
SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS
SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU
SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN
SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU
SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU
SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL
SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER
SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY
SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO
SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE
SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP
SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS
SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL
SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN
SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL
SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR
SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA
SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP
SEQRES 25 A 313 CYS
SEQRES 1 B 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN
SEQRES 2 B 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA
SEQRES 3 B 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU
SEQRES 4 B 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY
SEQRES 5 B 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS
SEQRES 6 B 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER
SEQRES 7 B 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS
SEQRES 8 B 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU
SEQRES 9 B 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN
SEQRES 10 B 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU
SEQRES 11 B 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU
SEQRES 12 B 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL
SEQRES 13 B 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER
SEQRES 14 B 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY
SEQRES 15 B 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO
SEQRES 16 B 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE
SEQRES 17 B 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP
SEQRES 18 B 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS
SEQRES 19 B 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL
SEQRES 20 B 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN
SEQRES 21 B 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL
SEQRES 22 B 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR
SEQRES 23 B 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA
SEQRES 24 B 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP
SEQRES 25 B 313 CYS
HET Q41 A 401 38
HET Q41 B 401 38
HETNAM Q41 2-AMINO-3-{[(5P)-2-[(3,5-DIMETHOXYPHENYL)METHYL]-5-(4-
HETNAM 2 Q41 FLUORO-2-METHYLPHENYL)-1-OXO-1,2,3,4-
HETNAM 3 Q41 TETRAHYDROISOQUINOLIN-7-YL]METHYL}-1-METHYL-1H-
HETNAM 4 Q41 IMIDAZOL-3-IUM
FORMUL 3 Q41 2(C30 H32 F N4 O3 1+)
FORMUL 5 HOH *469(H2 O)
SHEET 1 AA1 4 ALA A 36 LEU A 41 0
SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41
SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330
SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317
SHEET 1 AA2 4 VAL A 48 PHE A 53 0
SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52
SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60
SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O GLU A 80 N ILE A 71
SHEET 1 AA3 4 ILE A 90 TRP A 95 0
SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94
SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102
SHEET 4 AA3 4 LYS A 120 LEU A 125 -1 O LEU A 122 N ILE A 113
SHEET 1 AA4 4 VAL A 132 PHE A 137 0
SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136
SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144
SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153
SHEET 1 AA5 4 VAL A 174 PHE A 179 0
SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178
SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186
SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197
SHEET 1 AA6 4 VAL A 217 PHE A 222 0
SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O ALA A 232 N PHE A 219
SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229
SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242
SHEET 1 AA7 4 ALA A 264 SER A 267 0
SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267
SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276
SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285
SHEET 1 AA8 4 ALA B 36 LEU B 41 0
SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41
SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330
SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317
SHEET 1 AA9 4 VAL B 48 PHE B 53 0
SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O SER B 63 N SER B 49
SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O TRP B 72 N LEU B 60
SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O ILE B 83 N ILE B 69
SHEET 1 AB1 4 ILE B 90 TRP B 95 0
SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O VAL B 103 N ALA B 94
SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102
SHEET 4 AB1 4 CYS B 121 LEU B 125 -1 O LEU B 122 N ILE B 113
SHEET 1 AB2 4 VAL B 132 PHE B 137 0
SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136
SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144
SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153
SHEET 1 AB3 4 VAL B 174 PHE B 179 0
SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178
SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186
SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 209 N CYS B 195
SHEET 1 AB4 4 VAL B 217 PHE B 222 0
SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O ALA B 232 N PHE B 219
SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229
SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LEU B 249 N LEU B 240
SHEET 1 AB5 4 ALA B 264 SER B 267 0
SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267
SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276
SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O LEU B 297 N VAL B 283
SITE 1 AC1 17 SER A 49 ALA A 65 GLY A 89 ILE A 90
SITE 2 AC1 17 SER A 91 ASP A 92 PHE A 133 PHE A 149
SITE 3 AC1 17 PRO A 173 SER A 175 TYR A 191 TYR A 260
SITE 4 AC1 17 CYS A 261 PHE A 263 ILE A 305 LEU A 321
SITE 5 AC1 17 HOH A 570
SITE 1 AC2 15 SER B 49 ALA B 65 GLY B 89 ILE B 90
SITE 2 AC2 15 SER B 91 PHE B 133 PHE B 149 PRO B 173
SITE 3 AC2 15 SER B 175 TYR B 191 TYR B 260 CYS B 261
SITE 4 AC2 15 PHE B 263 ILE B 305 HOH B 513
CRYST1 46.566 47.099 68.984 89.06 89.82 74.18 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021475 -0.006085 0.000032 0.00000
SCALE2 0.000000 0.022068 -0.000356 0.00000
SCALE3 0.000000 0.000000 0.014498 0.00000