HEADER CELL CYCLE 18-SEP-19 6UD0 TITLE SOLUTION-STATE NMR STRUCTURAL ENSEMBLE OF HUMAN TSG101 UEV IN COMPLEX TITLE 2 WITH K63-LINKED DIUBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: DISTAL DOMAIN OF K63-LINKED DIUBIQUITIN. THE K63R COMPND 7 MUTATION IS MADE TO PREVENT FORMATION OF POLYUBIQUITIN DURING COMPND 8 ENZYMATIC LINKAGE TO THE PROXIMAL DOMAIN. JOINED TO THE PROXIMAL COMPND 9 DOMAIN OF DIUBIQUITIN AT RESIDUE G76 USING AN ISOPEPTIDE BOND.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBIQUITIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 OTHER_DETAILS: PROXIMAL DOMAIN OF K63-LINKED DIUBIQUITIN. THE COMPND 16 ADDITIONAL ASPARTIC ACID ON THE C-TERMINUS (+D77) IS MADE TO PREVENT COMPND 17 FORMATION OF POLYUBIQUITIN DURING ENZYMATIC LINKAGE TO THE DISTAL COMPND 18 DOMAIN. JOINED TO THE DISTAL DOMAIN OF DIUBIQUITIN AT RESIDUE K63 COMPND 19 USING AN ISOPEPTIDE BOND.; COMPND 20 MOL_ID: 3; COMPND 21 MOLECULE: TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; COMPND 22 CHAIN: C; COMPND 23 SYNONYM: ESCRT-I COMPLEX SUBUNIT TSG101; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: TSG101; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS ESCRT-I, CELL CYCLE, VIRAL BUDDING, UBIQUITIN E2 VARIANT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.STRICKLAND,S.WATANABE,S.M.BONN,C.M.CAMARA,D.FUSHMAN,C.A.CARTER, AUTHOR 2 N.TJANDRA REVDAT 3 14-JUN-23 6UD0 1 REMARK REVDAT 2 22-SEP-21 6UD0 1 JRNL REVDAT 1 17-MAR-21 6UD0 0 JRNL AUTH M.STRICKLAND,S.WATANABE,S.M.BONN,C.M.CAMARA,D.FUSHMAN, JRNL AUTH 2 C.A.CARTER,N.TJANDRA JRNL TITL TSG101/ESCRT-I RECRUITMENT REGULATED BY THE DUAL BINDING JRNL TITL 2 MODES OF K63-LINKED DIUBIQUITIN JRNL REF STRUCTURE 2021 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.51 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DOCKING WAS CARRIED OUT BETWEEN THE TWO REMARK 3 PROTEINS USING RIGID BODY SIMULATED ANNEALING WITH A FLEXIBLE REMARK 3 LINKER BETWEEN DIUBIQUITIN DOMAINS. INITIAL STRUCTURES WERE 3H7P REMARK 3 AND 2MJB FOR UBIQUITIN, AND 1S1Q FOR TSG101 UEV. DISTAL DOMAIN REMARK 3 AND TSG101 BACKBONE WERE FIXED TO 1S1Q POSITION. FOLLOWING REMARK 3 INITIAL DOCKING, THE LOWEST ENERGY STRUCTURE IN EACH OF THE TWO REMARK 3 CLUSTERS WAS USED AS INPUT FOR REFINEMENT, WITH AN ENSEMBLE REMARK 3 NUMBER OF 2. REMARK 4 REMARK 4 6UD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000241282. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-98% 15N] TSG101 UEV REMARK 210 DOMAIN, 200 UM K63-LINKED REMARK 210 DIUBIQUITIN, DISTAL DOMAIN, 200 REMARK 210 UM K63-LINKED DIUBIQUITIN, REMARK 210 PROXIMAL DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O; 200 UM [U-98% REMARK 210 15N] TSG101 UEV DOMAIN, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 93% H2O/7% D2O; REMARK 210 200 UM TSG101 UEV DOMAIN, 200 UM REMARK 210 [U-98% 15N] K63-LINKED REMARK 210 DIUBIQUITIN, DISTAL DOMAIN, 200 REMARK 210 UM K63-LINKED DIUBIQUITIN, REMARK 210 PROXIMAL DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O; 200 UM [U-98% REMARK 210 15N] K63-LINKED DIUBIQUITIN, REMARK 210 DISTAL DOMAIN, 200 UM K63-LINKED REMARK 210 DIUBIQUITIN, PROXIMAL DOMAIN, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 93% H2O/7% D2O; REMARK 210 200 UM TSG101 UEV DOMAIN, 200 UM REMARK 210 K63-LINKED DIUBIQUITIN, DISTAL REMARK 210 DOMAIN, 200 UM [U-98% 15N] K63- REMARK 210 LINKED DIUBIQUITIN, PROXIMAL REMARK 210 DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O; 200 UM K63- REMARK 210 LINKED DIUBIQUITIN, DISTAL REMARK 210 DOMAIN, 200 UM [U-98% 15N] K63- REMARK 210 LINKED DIUBIQUITIN, PROXIMAL REMARK 210 DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O; 125 UM [U-98% REMARK 210 15N] TSG101 UEV DOMAIN, 125 UM REMARK 210 K63-LINKED DIUBIQUITIN, DISTAL REMARK 210 DOMAIN, 125 UM K63-LINKED REMARK 210 DIUBIQUITIN, PROXIMAL DOMAIN, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 93% H2O/7% D2O; REMARK 210 125 UM [U-98% 15N] TSG101 UEV REMARK 210 DOMAIN, 125 UM K63-LINKED REMARK 210 DIUBIQUITIN, DISTAL DOMAIN, 125 REMARK 210 UM K63-LINKED DIUBIQUITIN, REMARK 210 PROXIMAL DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O; 125 UM [U-98% REMARK 210 15N] TSG101 UEV DOMAIN, 125 UM REMARK 210 K63-LINKED DIUBIQUITIN, DISTAL REMARK 210 DOMAIN, 125 UM K63-LINKED REMARK 210 DIUBIQUITIN, PROXIMAL DOMAIN, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 93% H2O/7% D2O; REMARK 210 125 UM [U-98% 15N] TSG101 UEV REMARK 210 DOMAIN, 125 UM K63-LINKED REMARK 210 DIUBIQUITIN, DISTAL DOMAIN, 125 REMARK 210 UM K63-LINKED DIUBIQUITIN, REMARK 210 PROXIMAL DOMAIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 9.5, TOPSPIN 3.0, CCPNMR REMARK 210 ANALYSIS 2.4.2, X-PLOR NIH 2.51 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 144 REMARK 465 PRO C 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 114 HD1 TRP C 117 1.45 REMARK 500 H LYS C 98 O PRO C 140 1.56 REMARK 500 O VAL C 89 HD3 PRO C 91 1.58 REMARK 500 H TYR C 63 O ASN C 66 1.58 REMARK 500 O LEU C 77 N THR C 79 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 GLN B 41 CA GLN B 41 CB -0.142 REMARK 500 6 ARG A 63 CD ARG A 63 NE 0.121 REMARK 500 9 TYR C 32 CB TYR C 32 CG -0.135 REMARK 500 12 TYR C 32 CB TYR C 32 CG -0.136 REMARK 500 14 TYR C 80 CG TYR C 80 CD2 -0.099 REMARK 500 14 TYR C 80 CZ TYR C 80 CE2 -0.081 REMARK 500 15 TYR C 32 CB TYR C 32 CG -0.128 REMARK 500 17 TYR C 63 CB TYR C 63 CG -0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO C 81 CA - N - CD ANGL. DEV. = -9.0 DEGREES REMARK 500 1 PRO C 81 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 2 VAL C 12 CB - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 2 TYR C 63 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 2 TYR C 63 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 TYR C 80 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 TYR C 80 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 PRO C 81 CA - N - CD ANGL. DEV. = -8.7 DEGREES REMARK 500 3 VAL C 61 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 3 PRO C 81 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 4 PRO C 81 CA - N - CD ANGL. DEV. = -8.4 DEGREES REMARK 500 4 PRO C 81 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 5 TYR C 17 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 5 LEU C 76 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 5 PRO C 81 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 5 PRO C 81 N - CA - CB ANGL. DEV. = 8.0 DEGREES REMARK 500 6 MET A 1 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 6 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 6 PRO C 81 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 7 PRO C 81 CA - N - CD ANGL. DEV. = -8.4 DEGREES REMARK 500 8 PHE C 88 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 9 TYR C 32 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 9 TYR C 32 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 9 PRO C 81 CA - N - CD ANGL. DEV. = -8.7 DEGREES REMARK 500 10 TYR C 17 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 10 PRO C 81 CB - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 10 PRO C 81 N - CA - CB ANGL. DEV. = 8.0 DEGREES REMARK 500 11 PRO C 81 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 11 PRO C 81 N - CA - CB ANGL. DEV. = 8.0 DEGREES REMARK 500 12 TYR C 32 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 12 TYR C 32 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 12 PRO C 81 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 13 PRO C 81 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 14 ILE A 61 N - CA - CB ANGL. DEV. = 15.5 DEGREES REMARK 500 14 TYR B 59 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 14 TYR C 80 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 14 TYR C 80 CB - CG - CD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 14 TYR C 80 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 14 PRO C 81 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 15 TYR C 32 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 15 TYR C 80 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 15 PRO C 81 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 16 PRO C 81 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 17 TYR C 63 N - CA - CB ANGL. DEV. = 15.9 DEGREES REMARK 500 17 TYR C 63 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 17 TYR C 68 N - CA - CB ANGL. DEV. = 13.1 DEGREES REMARK 500 18 PRO C 81 CA - N - CD ANGL. DEV. = -8.4 DEGREES REMARK 500 19 PRO C 81 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 20 TYR C 17 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 20 THR C 21 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 73 64.39 81.93 REMARK 500 1 ARG A 74 -36.92 -151.22 REMARK 500 1 ARG B 74 71.25 57.31 REMARK 500 1 SER C 4 142.48 67.07 REMARK 500 1 TYR C 17 73.32 -118.99 REMARK 500 1 ARG C 18 -75.21 -59.68 REMARK 500 1 ASP C 19 -77.09 -28.03 REMARK 500 1 SER C 48 159.05 -49.60 REMARK 500 1 ASP C 78 -24.23 -21.54 REMARK 500 1 LYS C 98 59.61 -103.45 REMARK 500 1 THR C 99 135.78 -19.02 REMARK 500 1 ASP C 104 -150.30 -104.82 REMARK 500 1 GLU C 116 62.94 -112.28 REMARK 500 1 LYS C 118 -74.45 -124.23 REMARK 500 1 HIS C 119 -35.96 141.37 REMARK 500 2 ARG A 74 -171.97 55.62 REMARK 500 2 LEU B 73 101.92 -167.21 REMARK 500 2 ARG B 74 -87.29 60.51 REMARK 500 2 SER C 4 142.48 67.07 REMARK 500 2 TYR C 17 73.32 -118.99 REMARK 500 2 ARG C 18 -75.21 -59.68 REMARK 500 2 ASP C 19 -77.09 -28.03 REMARK 500 2 SER C 48 159.05 -49.60 REMARK 500 2 ASP C 78 -24.23 -21.54 REMARK 500 2 LYS C 98 59.61 -103.45 REMARK 500 2 THR C 99 135.78 -19.02 REMARK 500 2 ASP C 104 -150.30 -104.82 REMARK 500 2 GLU C 116 62.94 -112.28 REMARK 500 2 LYS C 118 -74.45 -124.23 REMARK 500 2 HIS C 119 -35.96 141.37 REMARK 500 3 LEU A 73 -73.28 164.19 REMARK 500 3 SER C 4 142.20 67.14 REMARK 500 3 TYR C 17 73.22 -119.22 REMARK 500 3 ARG C 18 -75.17 -59.69 REMARK 500 3 ASP C 19 -76.88 -28.06 REMARK 500 3 SER C 48 159.04 -49.98 REMARK 500 3 ASP C 78 -24.57 -21.30 REMARK 500 3 LYS C 98 59.48 -103.53 REMARK 500 3 THR C 99 135.39 -19.02 REMARK 500 3 ASP C 104 -150.60 -105.76 REMARK 500 3 GLU C 116 62.51 -111.06 REMARK 500 3 LYS C 118 -79.77 -124.47 REMARK 500 3 HIS C 119 -37.27 147.62 REMARK 500 3 PHE C 142 114.18 -160.27 REMARK 500 4 LEU A 73 125.95 167.53 REMARK 500 4 ARG A 74 -151.30 45.02 REMARK 500 4 SER C 4 142.48 67.07 REMARK 500 4 TYR C 17 73.32 -118.99 REMARK 500 4 ARG C 18 -75.21 -59.68 REMARK 500 4 ASP C 19 -77.09 -28.03 REMARK 500 REMARK 500 THIS ENTRY HAS 286 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 TYR C 32 0.07 SIDE CHAIN REMARK 500 12 TYR C 32 0.07 SIDE CHAIN REMARK 500 19 TYR C 80 0.06 SIDE CHAIN REMARK 500 20 TYR C 80 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30675 RELATED DB: BMRB REMARK 900 SOLUTION-STATE NMR STRUCTURAL ENSEMBLE OF HUMAN TSG101 UEV IN REMARK 900 COMPLEX WITH K63-LINKED DIUBIQUITIN DBREF 6UD0 A 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 6UD0 B 1 77 UNP P0CG47 UBB_HUMAN 1 77 DBREF 6UD0 C 1 145 UNP Q99816 TS101_HUMAN 1 145 SEQADV 6UD0 ARG A 63 UNP P0CG47 LYS 63 ENGINEERED MUTATION SEQADV 6UD0 ASP B 77 UNP P0CG47 MET 77 ENGINEERED MUTATION SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 C 145 MET ALA VAL SER GLU SER GLN LEU LYS LYS MET VAL SER SEQRES 2 C 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 C 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 C 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 C 145 MET ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 C 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 C 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 C 145 THR SER SER MET THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 C 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 C 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 C 145 MET ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 C 145 ARG PRO HELIX 1 AA1 THR A 22 GLU A 34 1 13 HELIX 2 AA2 PRO A 37 GLN A 41 5 5 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR B 22 GLU B 34 1 13 HELIX 5 AA5 PRO B 37 GLN B 41 5 5 HELIX 6 AA6 LEU B 56 ASN B 60 5 5 HELIX 7 AA7 SER C 4 VAL C 12 1 9 HELIX 8 AA8 TYR C 17 TYR C 32 1 16 HELIX 9 AA9 LEU C 111 GLU C 116 1 6 HELIX 10 AB1 ASP C 123 GLU C 138 1 16 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 SER A 65 VAL A 70 1 O SER A 65 N PHE A 4 SHEET 4 AA1 5 ARG A 42 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA2 5 SER B 65 VAL B 70 1 O SER B 65 N PHE B 4 SHEET 4 AA2 5 ARG B 42 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA3 3 LEU C 35 VAL C 43 0 SHEET 2 AA3 3 SER C 49 TYR C 63 -1 O ARG C 50 N TYR C 42 SHEET 3 AA3 3 ASN C 66 LEU C 76 -1 O ASN C 66 N TYR C 63 LINK C GLY A 76 NZ LYS B 63 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1