HEADER FLUORESCENT PROTEIN 19-SEP-19 6UDB TITLE SPECTROSCOPIC AND STRUCTURAL CHARACTERIZATION OF A GENETICALLY ENCODED TITLE 2 DIRECT SENSOR FOR PROTEIN-LIGAND INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UNNATURAL AMINO ACID, NON-CANONICAL AMINO ACID, FLUORESCENCE, KEYWDS 2 BIOSENSOR, SMALL MOLECULE BIOSENSOR, LIGAND DETECTION, FLUORESCENT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.MILLS,P.R.GLEASON,C.R.SIMMONS,J.N.HENDERSON,B.K.KARTCHNER REVDAT 5 16-OCT-24 6UDB 1 REMARK REVDAT 4 15-NOV-23 6UDB 1 LINK REVDAT 3 11-OCT-23 6UDB 1 REMARK REVDAT 2 13-OCT-21 6UDB 1 JRNL REVDAT 1 23-SEP-20 6UDB 0 JRNL AUTH P.R.GLEASON,B.KOLBABA-KARTCHNER,J.N.HENDERSON,E.P.STAHL, JRNL AUTH 2 C.R.SIMMONS,J.H.MILLS JRNL TITL STRUCTURAL ORIGINS OF ALTERED SPECTROSCOPIC PROPERTIES UPON JRNL TITL 2 LIGAND BINDING IN PROTEINS CONTAINING A FLUORESCENT JRNL TITL 3 NONCANONICAL AMINO ACID. JRNL REF BIOCHEMISTRY V. 60 2577 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 34415744 JRNL DOI 10.1021/ACS.BIOCHEM.1C00291 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.046 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3905 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5400 ; 2.147 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 7.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;27.473 ;23.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;13.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.172 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3021 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RY2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 500 UL OF 0.1 M BIS-TRIS, PH 6.5, 25% REMARK 280 W/V POLYETHYLENE GLYCOL 3350 IN THE RESERVOIR WITH 2 UL OF REMARK 280 RESERVOIR BUFFER MIXED WITH 2 UL OF 10 MG/ML OF PROTEIN IN THE REMARK 280 DROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.77750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 ALA A 46 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 MET B 12 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 46 REMARK 465 VAL B 47 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 MET C 12 REMARK 465 ALA C 13 REMARK 465 GLU C 14 REMARK 465 ALA C 137 REMARK 465 ALA C 138 REMARK 465 SER C 139 REMARK 465 LEU C 140 REMARK 465 GLU C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 MET D 12 REMARK 465 ALA D 13 REMARK 465 GLU D 14 REMARK 465 ALA D 46 REMARK 465 VAL D 47 REMARK 465 GLY D 48 REMARK 465 SER D 136 REMARK 465 ALA D 137 REMARK 465 ALA D 138 REMARK 465 SER D 139 REMARK 465 LEU D 140 REMARK 465 GLU D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 ARG A 103 CZ NH1 NH2 REMARK 470 LYS A 134 CE NZ REMARK 470 ASN B 49 CG OD1 ND2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 VAL C 47 CG1 REMARK 470 ASN C 49 CB CG OD1 ND2 REMARK 470 GLU C 51 CB CG CD OE1 OE2 REMARK 470 GLU C 116 CG CD OE1 OE2 REMARK 470 GLU D 44 OE1 OE2 REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 GLU D 116 CG CD OE1 OE2 REMARK 470 LYS D 132 NZ REMARK 470 LYS D 134 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP C 75 CE3 TRP C 75 CZ3 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 136 -163.74 -67.51 REMARK 500 SER C 52 -161.69 79.16 REMARK 500 SER C 52 -162.85 68.51 REMARK 500 THR D 66 52.28 -111.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 109 and DV7 B REMARK 800 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DV7 B 110 and THR B REMARK 800 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 109 and DV7 C REMARK 800 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DV7 C 110 and THR C REMARK 800 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 109 and DV7 D REMARK 800 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DV7 D 110 and THR D REMARK 800 111 DBREF 6UDB A 13 139 UNP P22629 SAV_STRAV 37 163 DBREF 6UDB B 13 139 UNP P22629 SAV_STRAV 37 163 DBREF 6UDB C 13 139 UNP P22629 SAV_STRAV 37 163 DBREF 6UDB D 13 139 UNP P22629 SAV_STRAV 37 163 SEQADV 6UDB MET A 12 UNP P22629 INITIATING METHIONINE SEQADV 6UDB DV7 A 110 UNP P22629 LEU 134 CONFLICT SEQADV 6UDB LEU A 140 UNP P22629 EXPRESSION TAG SEQADV 6UDB GLU A 141 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 142 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 143 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 144 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 145 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 146 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS A 147 UNP P22629 EXPRESSION TAG SEQADV 6UDB MET B 12 UNP P22629 INITIATING METHIONINE SEQADV 6UDB DV7 B 110 UNP P22629 LEU 134 CONFLICT SEQADV 6UDB LEU B 140 UNP P22629 EXPRESSION TAG SEQADV 6UDB GLU B 141 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 142 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 143 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 144 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 145 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 146 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS B 147 UNP P22629 EXPRESSION TAG SEQADV 6UDB MET C 12 UNP P22629 INITIATING METHIONINE SEQADV 6UDB DV7 C 110 UNP P22629 LEU 134 CONFLICT SEQADV 6UDB LEU C 140 UNP P22629 EXPRESSION TAG SEQADV 6UDB GLU C 141 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 142 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 143 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 144 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 145 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 146 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS C 147 UNP P22629 EXPRESSION TAG SEQADV 6UDB MET D 12 UNP P22629 INITIATING METHIONINE SEQADV 6UDB DV7 D 110 UNP P22629 LEU 134 CONFLICT SEQADV 6UDB LEU D 140 UNP P22629 EXPRESSION TAG SEQADV 6UDB GLU D 141 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 142 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 143 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 144 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 145 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 146 UNP P22629 EXPRESSION TAG SEQADV 6UDB HIS D 147 UNP P22629 EXPRESSION TAG SEQRES 1 A 136 MET ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN SEQRES 2 A 136 LEU GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY SEQRES 3 A 136 ALA LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA SEQRES 4 A 136 GLU SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA SEQRES 5 A 136 PRO ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR SEQRES 6 A 136 VAL ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA SEQRES 7 A 136 THR THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA SEQRES 8 A 136 ARG ILE ASN THR GLN TRP LEU DV7 THR SER GLY THR THR SEQRES 9 A 136 GLU ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP SEQRES 10 A 136 THR PHE THR LYS VAL LYS PRO SER ALA ALA SER LEU GLU SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 B 136 MET ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN SEQRES 2 B 136 LEU GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY SEQRES 3 B 136 ALA LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA SEQRES 4 B 136 GLU SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA SEQRES 5 B 136 PRO ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR SEQRES 6 B 136 VAL ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA SEQRES 7 B 136 THR THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA SEQRES 8 B 136 ARG ILE ASN THR GLN TRP LEU DV7 THR SER GLY THR THR SEQRES 9 B 136 GLU ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP SEQRES 10 B 136 THR PHE THR LYS VAL LYS PRO SER ALA ALA SER LEU GLU SEQRES 11 B 136 HIS HIS HIS HIS HIS HIS SEQRES 1 C 136 MET ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN SEQRES 2 C 136 LEU GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY SEQRES 3 C 136 ALA LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA SEQRES 4 C 136 GLU SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA SEQRES 5 C 136 PRO ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR SEQRES 6 C 136 VAL ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA SEQRES 7 C 136 THR THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA SEQRES 8 C 136 ARG ILE ASN THR GLN TRP LEU DV7 THR SER GLY THR THR SEQRES 9 C 136 GLU ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP SEQRES 10 C 136 THR PHE THR LYS VAL LYS PRO SER ALA ALA SER LEU GLU SEQRES 11 C 136 HIS HIS HIS HIS HIS HIS SEQRES 1 D 136 MET ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN SEQRES 2 D 136 LEU GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY SEQRES 3 D 136 ALA LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA SEQRES 4 D 136 GLU SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA SEQRES 5 D 136 PRO ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR SEQRES 6 D 136 VAL ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA SEQRES 7 D 136 THR THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA SEQRES 8 D 136 ARG ILE ASN THR GLN TRP LEU DV7 THR SER GLY THR THR SEQRES 9 D 136 GLU ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP SEQRES 10 D 136 THR PHE THR LYS VAL LYS PRO SER ALA ALA SER LEU GLU SEQRES 11 D 136 HIS HIS HIS HIS HIS HIS HET DV7 A 110 18 HET DV7 B 110 18 HET DV7 C 110 18 HET DV7 D 110 18 HET PEG A 201 7 HET PEG B 201 7 HET PEG C 201 7 HET PEG D 201 7 HETNAM DV7 L-(7-HYDROXYCOUMARIN-4-YL)ETHYLGLYCINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN DV7 (2S)-2-AMINO-4-(7-HYDROXY-2-OXO-2H-1-BENZOPYRAN-4-YL) HETSYN 2 DV7 BUTANOIC ACID FORMUL 1 DV7 4(C13 H13 N O5) FORMUL 5 PEG 4(C4 H10 O3) FORMUL 9 HOH *448(H2 O) HELIX 1 AA1 ASN A 49 GLU A 51 5 3 HELIX 2 AA2 THR A 115 LYS A 121 5 7 HELIX 3 AA3 ASN B 49 ARG B 53 5 5 HELIX 4 AA4 THR B 115 LYS B 121 5 7 HELIX 5 AA5 THR C 115 LYS C 121 5 7 HELIX 6 AA6 ASN D 49 GLU D 51 5 3 HELIX 7 AA7 THR D 115 LYS D 121 5 7 SHEET 1 AA1 9 GLY A 19 TYR A 22 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O GLU A 44 N THR A 28 SHEET 4 AA1 9 ARG A 53 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O SER A 88 N TRP A 79 SHEET 7 AA1 9 ARG A 103 SER A 112 -1 O GLN A 107 N SER A 93 SHEET 8 AA1 9 THR A 123 THR A 131 -1 O PHE A 130 N ILE A 104 SHEET 9 AA1 9 GLY A 19 TYR A 22 -1 N TYR A 22 O THR A 131 SHEET 1 AA2 9 GLY B 19 ASN B 23 0 SHEET 2 AA2 9 THR B 28 ALA B 33 -1 O PHE B 29 N TRP B 21 SHEET 3 AA2 9 ALA B 38 GLU B 44 -1 O GLU B 44 N THR B 28 SHEET 4 AA2 9 TYR B 54 TYR B 60 -1 O TYR B 54 N TYR B 43 SHEET 5 AA2 9 THR B 71 LYS B 80 -1 O THR B 76 N THR B 57 SHEET 6 AA2 9 ASN B 85 VAL B 97 -1 O SER B 88 N TRP B 79 SHEET 7 AA2 9 ARG B 103 SER B 112 -1 O ARG B 103 N VAL B 97 SHEET 8 AA2 9 THR B 123 THR B 131 -1 O PHE B 130 N ILE B 104 SHEET 9 AA2 9 GLY B 19 ASN B 23 -1 N TYR B 22 O THR B 131 SHEET 1 AA3 9 GLY C 19 TYR C 22 0 SHEET 2 AA3 9 THR C 28 ALA C 33 -1 O PHE C 29 N TRP C 21 SHEET 3 AA3 9 ALA C 38 GLU C 44 -1 O THR C 42 N ILE C 30 SHEET 4 AA3 9 ARG C 53 TYR C 60 -1 O GLY C 58 N LEU C 39 SHEET 5 AA3 9 THR C 71 LYS C 80 -1 O THR C 76 N THR C 57 SHEET 6 AA3 9 ASN C 85 VAL C 97 -1 O ALA C 86 N TRP C 79 SHEET 7 AA3 9 ARG C 103 SER C 112 -1 O ARG C 103 N VAL C 97 SHEET 8 AA3 9 THR C 123 THR C 131 -1 O PHE C 130 N ILE C 104 SHEET 9 AA3 9 GLY C 19 TYR C 22 -1 N TYR C 22 O THR C 131 SHEET 1 AA4 9 GLY D 19 TYR D 22 0 SHEET 2 AA4 9 THR D 28 ALA D 33 -1 O PHE D 29 N TRP D 21 SHEET 3 AA4 9 ALA D 38 GLU D 44 -1 O GLU D 44 N THR D 28 SHEET 4 AA4 9 ARG D 53 TYR D 60 -1 O TYR D 54 N TYR D 43 SHEET 5 AA4 9 THR D 71 LYS D 80 -1 O THR D 76 N THR D 57 SHEET 6 AA4 9 ASN D 85 VAL D 97 -1 O SER D 88 N TRP D 79 SHEET 7 AA4 9 ARG D 103 SER D 112 -1 O GLN D 107 N SER D 93 SHEET 8 AA4 9 THR D 123 THR D 131 -1 O PHE D 130 N ILE D 104 SHEET 9 AA4 9 GLY D 19 TYR D 22 -1 N TYR D 22 O THR D 131 LINK C LEU A 109 N DV7 A 110 1555 1555 1.32 LINK C DV7 A 110 N THR A 111 1555 1555 1.31 LINK C LEU B 109 N DV7 B 110 1555 1555 1.35 LINK C DV7 B 110 N THR B 111 1555 1555 1.36 LINK C LEU C 109 N DV7 C 110 1555 1555 1.33 LINK C DV7 C 110 N THR C 111 1555 1555 1.34 LINK C LEU D 109 N DV7 D 110 1555 1555 1.32 LINK C DV7 D 110 N THR D 111 1555 1555 1.33 SITE 1 AC1 6 TYR A 43 THR A 90 TRP A 108 DV7 A 110 SITE 2 AC1 6 ASP A 128 HOH A 308 SITE 1 AC2 6 ASN B 23 TYR B 43 TRP B 79 THR B 90 SITE 2 AC2 6 TRP B 108 ASP B 128 SITE 1 AC3 8 ASN C 23 SER C 27 TYR C 43 TRP C 79 SITE 2 AC3 8 THR C 90 TRP C 108 ASP C 128 HOH C 303 SITE 1 AC4 7 ASN D 23 TYR D 43 TRP D 79 THR D 90 SITE 2 AC4 7 TRP D 108 ASP D 128 HOH D 328 SITE 1 AC5 14 ALA B 89 THR B 90 THR B 91 TRP B 108 SITE 2 AC5 14 THR B 111 SER B 112 SER B 122 THR B 123 SITE 3 AC5 14 LEU B 124 HOH B 316 TRP C 120 VAL C 125 SITE 4 AC5 14 SER D 93 GLN D 107 SITE 1 AC6 14 SER B 88 ALA B 89 THR B 90 LEU B 109 SITE 2 AC6 14 SER B 112 SER B 122 THR B 123 LEU B 124 SITE 3 AC6 14 HOH B 316 HOH B 331 TRP C 120 ALA D 72 SITE 4 AC6 14 SER D 93 GLY D 94 SITE 1 AC7 19 SER A 93 GLN A 107 TRP B 120 VAL B 125 SITE 2 AC7 19 ALA C 89 THR C 90 THR C 91 TRP C 108 SITE 3 AC7 19 THR C 111 SER C 112 SER C 122 THR C 123 SITE 4 AC7 19 LEU C 124 HOH C 303 HOH C 304 HOH C 314 SITE 5 AC7 19 HOH C 324 HOH C 340 HOH C 344 SITE 1 AC8 19 ALA A 72 SER A 93 GLY A 94 TRP B 120 SITE 2 AC8 19 SER C 88 ALA C 89 THR C 90 LEU C 109 SITE 3 AC8 19 SER C 112 SER C 122 THR C 123 LEU C 124 SITE 4 AC8 19 HOH C 303 HOH C 304 HOH C 314 HOH C 323 SITE 5 AC8 19 HOH C 324 HOH C 340 HOH C 344 SITE 1 AC9 14 TRP A 120 SER B 93 GLN B 107 HOH B 307 SITE 2 AC9 14 ALA D 89 THR D 90 THR D 91 TRP D 108 SITE 3 AC9 14 THR D 111 SER D 112 SER D 122 THR D 123 SITE 4 AC9 14 LEU D 124 HOH D 328 SITE 1 AD1 15 TRP A 120 ALA B 72 SER B 93 GLY B 94 SITE 2 AD1 15 SER D 88 ALA D 89 THR D 90 TRP D 108 SITE 3 AD1 15 LEU D 109 SER D 112 SER D 122 THR D 123 SITE 4 AD1 15 LEU D 124 HOH D 328 HOH D 341 CRYST1 46.458 85.555 58.098 90.00 99.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021525 0.000000 0.003407 0.00000 SCALE2 0.000000 0.011688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017427 0.00000