HEADER TRANSFERASE 20-SEP-19 6UED TITLE APO PSEUDOMONAS AERUGINOSA LPXD STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: LPXD, PA3646; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXD, APO, TRIMER, ACYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,K.KROECK,M.SACCO REVDAT 2 13-MAR-24 6UED 1 LINK REVDAT 1 13-NOV-19 6UED 0 JRNL AUTH K.G.KROECK,M.D.SACCO,E.W.SMITH,X.ZHANG,D.SHOUN,A.AKHTAR, JRNL AUTH 2 S.E.DARCH,F.COHEN,L.D.ANDREWS,J.E.KNOX,Y.CHEN JRNL TITL DISCOVERY OF DUAL-ACTIVITY SMALL-MOLECULE LIGANDS OF JRNL TITL 2 PSEUDOMONAS AERUGINOSA LPXA AND LPXD USING SPR AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF SCI REP V. 9 15450 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31664082 JRNL DOI 10.1038/S41598-019-51844-Z REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 51180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.352 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2392 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3474 ; 1.613 ; 1.624 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5509 ; 1.449 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;30.484 ;21.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;12.550 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2997 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000243421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350 0.2M MAGNESIUM ACETATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.37750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.24016 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.43500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.37750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.24016 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.43500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.37750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.24016 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.43500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.48033 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.87000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.48033 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.87000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.48033 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 670 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLU A -4 REMARK 465 ASN A -3 REMARK 465 LEU A -2 REMARK 465 TYR A -1 REMARK 465 PHE A 0 REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 THR A 344 REMARK 465 SER A 345 REMARK 465 SER A 346 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 ALA A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 ASP A 352 REMARK 465 ALA A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 340 CG CD1 CD2 REMARK 470 VAL A 343 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 223 -65.00 -130.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 596 O REMARK 620 2 HOH A 596 O 93.0 REMARK 620 3 HOH A 691 O 91.6 175.4 REMARK 620 4 HOH A 691 O 87.1 91.6 88.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 DBREF 6UED A 3 353 UNP Q9HXY6 LPXD_PSEAE 3 353 SEQADV 6UED MET A -15 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -14 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -13 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -12 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -11 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -10 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED HIS A -9 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED SER A -8 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED SER A -7 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED GLY A -6 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED ARG A -5 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED GLU A -4 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED ASN A -3 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED LEU A -2 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED TYR A -1 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED PHE A 0 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED GLN A 1 UNP Q9HXY6 EXPRESSION TAG SEQADV 6UED GLY A 2 UNP Q9HXY6 EXPRESSION TAG SEQRES 1 A 369 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 369 LEU TYR PHE GLN GLY SER THR LEU SER TYR THR LEU GLY SEQRES 3 A 369 GLN LEU ALA ALA HIS VAL GLY ALA GLU VAL ARG GLY ASP SEQRES 4 A 369 ALA ASP LEU PRO ILE GLN GLY LEU ALA THR LEU GLN GLU SEQRES 5 A 369 ALA GLY PRO ALA GLN LEU SER PHE LEU ALA ASN PRO GLN SEQRES 6 A 369 TYR ARG LYS TYR LEU PRO GLU SER ARG ALA GLY ALA VAL SEQRES 7 A 369 LEU LEU THR ALA ALA ASP ALA ASP GLY PHE ALA GLY THR SEQRES 8 A 369 ALA LEU VAL VAL ALA ASN PRO TYR LEU ALA TYR ALA SER SEQRES 9 A 369 LEU SER HIS LEU PHE ASP ARG LYS PRO LYS ALA ALA ALA SEQRES 10 A 369 GLY ILE HIS PRO THR ALA ILE VAL ALA ALA ASP ALA GLU SEQRES 11 A 369 VAL ASP PRO SER ALA SER VAL GLY ALA TYR ALA VAL ILE SEQRES 12 A 369 GLU SER GLY ALA ARG ILE GLY ALA GLY VAL SER ILE GLY SEQRES 13 A 369 ALA HIS CYS VAL ILE GLY ALA ARG SER VAL ILE GLY GLU SEQRES 14 A 369 GLY GLY TRP LEU ALA PRO ARG VAL THR LEU TYR HIS ASP SEQRES 15 A 369 VAL THR ILE GLY ALA ARG VAL SER ILE GLN SER GLY ALA SEQRES 16 A 369 VAL ILE GLY GLY GLU GLY PHE GLY PHE ALA ASN GLU LYS SEQRES 17 A 369 GLY VAL TRP GLN LYS ILE ALA GLN ILE GLY GLY VAL THR SEQRES 18 A 369 ILE GLY ASP ASP VAL GLU ILE GLY ALA ASN THR THR ILE SEQRES 19 A 369 ASP ARG GLY ALA LEU SER ASP THR LEU ILE GLY ASN GLY SEQRES 20 A 369 VAL LYS LEU ASP ASN GLN ILE MET ILE ALA HIS ASN VAL SEQRES 21 A 369 GLN ILE GLY ASP HIS THR ALA MET ALA ALA CYS VAL GLY SEQRES 22 A 369 ILE SER GLY SER ALA LYS ILE GLY ARG HIS CYS MET LEU SEQRES 23 A 369 ALA GLY GLY VAL GLY LEU VAL GLY HIS ILE GLU ILE CYS SEQRES 24 A 369 ASP ASN VAL PHE VAL THR GLY MET THR MET VAL THR ARG SEQRES 25 A 369 SER ILE THR GLU PRO GLY SER TYR SER SER GLY THR ALA SEQRES 26 A 369 MET GLN PRO ALA ALA GLU TRP LYS LYS SER ALA ALA ARG SEQRES 27 A 369 ILE ARG GLN LEU ASP ASP MET ALA ARG ARG LEU GLN GLN SEQRES 28 A 369 LEU GLU LYS ARG LEU ALA ALA VAL THR SER SER GLY ASP SEQRES 29 A 369 ALA SER SER ASP ALA HET GOL A 401 6 HET GOL A 402 6 HET MG A 403 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 MG MG 2+ FORMUL 5 HOH *208(H2 O) HELIX 1 AA1 LEU A 9 GLY A 17 1 9 HELIX 2 AA2 ASN A 47 LEU A 54 5 8 HELIX 3 AA3 THR A 65 ASP A 70 1 6 HELIX 4 AA4 ASN A 81 HIS A 91 1 11 HELIX 5 AA5 LEU A 92 ASP A 94 5 3 HELIX 6 AA6 PRO A 312 GLN A 325 1 14 HELIX 7 AA7 GLN A 325 VAL A 343 1 19 SHEET 1 AA1 2 TYR A 7 THR A 8 0 SHEET 2 AA1 2 PRO A 27 ILE A 28 -1 O ILE A 28 N TYR A 7 SHEET 1 AA2 5 GLU A 19 ARG A 21 0 SHEET 2 AA2 5 THR A 75 VAL A 78 -1 O ALA A 76 N ARG A 21 SHEET 3 AA2 5 ALA A 61 LEU A 64 1 N VAL A 62 O LEU A 77 SHEET 4 AA2 5 GLN A 41 PHE A 44 1 N SER A 43 O LEU A 63 SHEET 5 AA2 5 GLY A 30 LEU A 31 1 N GLY A 30 O LEU A 42 SHEET 1 AA311 GLY A 102 ILE A 103 0 SHEET 2 AA311 SER A 120 VAL A 121 1 O VAL A 121 N GLY A 102 SHEET 3 AA311 SER A 138 ILE A 139 1 O ILE A 139 N SER A 120 SHEET 4 AA311 TRP A 156 LEU A 157 1 O LEU A 157 N SER A 138 SHEET 5 AA311 SER A 174 ILE A 175 1 O ILE A 175 N TRP A 156 SHEET 6 AA311 GLU A 211 ILE A 212 1 O ILE A 212 N SER A 174 SHEET 7 AA311 LYS A 233 LEU A 234 1 O LEU A 234 N GLU A 211 SHEET 8 AA311 ALA A 251 MET A 252 1 O MET A 252 N LYS A 233 SHEET 9 AA311 MET A 269 LEU A 270 1 O LEU A 270 N ALA A 251 SHEET 10 AA311 VAL A 286 VAL A 288 1 O VAL A 286 N MET A 269 SHEET 11 AA311 GLY A 302 TYR A 304 1 O GLY A 302 N PHE A 287 SHEET 1 AA410 ILE A 108 VAL A 109 0 SHEET 2 AA410 VAL A 126 ILE A 127 1 O ILE A 127 N ILE A 108 SHEET 3 AA410 VAL A 144 ILE A 145 1 O ILE A 145 N VAL A 126 SHEET 4 AA410 THR A 162 LEU A 163 1 O LEU A 163 N VAL A 144 SHEET 5 AA410 VAL A 180 GLY A 183 1 O ILE A 181 N THR A 162 SHEET 6 AA410 THR A 217 ASP A 219 1 O ILE A 218 N GLY A 182 SHEET 7 AA410 MET A 239 ILE A 240 1 O ILE A 240 N THR A 217 SHEET 8 AA410 GLY A 257 ILE A 258 1 O ILE A 258 N MET A 239 SHEET 9 AA410 GLY A 275 LEU A 276 1 O LEU A 276 N GLY A 257 SHEET 10 AA410 MET A 293 VAL A 294 1 O VAL A 294 N GLY A 275 SHEET 1 AA5 9 GLU A 114 VAL A 115 0 SHEET 2 AA5 9 ARG A 132 ILE A 133 1 O ILE A 133 N GLU A 114 SHEET 3 AA5 9 VAL A 150 ILE A 151 1 O ILE A 151 N ARG A 132 SHEET 4 AA5 9 VAL A 167 ILE A 169 1 O ILE A 169 N VAL A 150 SHEET 5 AA5 9 VAL A 204 ILE A 206 1 O ILE A 206 N THR A 168 SHEET 6 AA5 9 THR A 226 ILE A 228 1 O THR A 226 N THR A 205 SHEET 7 AA5 9 GLN A 245 ILE A 246 1 O ILE A 246 N LEU A 227 SHEET 8 AA5 9 LYS A 263 ILE A 264 1 O ILE A 264 N GLN A 245 SHEET 9 AA5 9 GLU A 281 ILE A 282 1 O ILE A 282 N LYS A 263 SHEET 1 AA6 2 PHE A 188 GLU A 191 0 SHEET 2 AA6 2 VAL A 194 LYS A 197 -1 O GLN A 196 N ALA A 189 LINK MG MG A 403 O HOH A 596 1555 1555 2.07 LINK MG MG A 403 O HOH A 596 1555 3555 2.07 LINK MG MG A 403 O HOH A 691 1555 1555 2.13 LINK MG MG A 403 O HOH A 691 1555 3555 2.13 SITE 1 AC1 11 ALA A 254 CYS A 255 GLY A 257 SER A 259 SITE 2 AC1 11 GLY A 272 GLY A 273 GLY A 275 LEU A 276 SITE 3 AC1 11 GOL A 402 HOH A 573 HOH A 591 SITE 1 AC2 11 GLY A 257 SER A 259 GLY A 272 LEU A 276 SITE 2 AC2 11 MET A 291 MET A 293 GOL A 401 HOH A 506 SITE 3 AC2 11 HOH A 526 HOH A 591 HOH A 673 SITE 1 AC3 2 HOH A 596 HOH A 691 CRYST1 104.755 104.755 94.305 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009546 0.005511 0.000000 0.00000 SCALE2 0.000000 0.011023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010604 0.00000