data_6UF8 # _entry.id 6UF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UF8 pdb_00006uf8 10.2210/pdb6uf8/pdb WWPDB D_1000244518 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-02 2 'Structure model' 1 1 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UF8 _pdbx_database_status.recvd_initial_deposition_date 2019-09-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mulligan, V.K.' 1 0000-0001-6038-8922 'Kang, C.S.' 2 0000-0003-0959-0783 'Antselovich, I.' 3 0000-0002-2208-9937 'Sawaya, M.R.' 4 0000-0003-0874-9043 'Yeates, T.O.' 5 0000-0001-5709-9839 'Baker, D.' 6 0000-0001-7896-6217 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 29 _citation.language ? _citation.page_first 2433 _citation.page_last 2445 _citation.title 'Computational design of mixed chirality peptide macrocycles with internal symmetry.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3974 _citation.pdbx_database_id_PubMed 33058266 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mulligan, V.K.' 1 0000-0001-6038-8922 primary 'Kang, C.S.' 2 0000-0003-0959-0783 primary 'Sawaya, M.R.' 3 ? primary 'Rettie, S.' 4 ? primary 'Li, X.' 5 ? primary 'Antselovich, I.' 6 ? primary 'Craven, T.W.' 7 ? primary 'Watkins, A.M.' 8 ? primary 'Labonte, J.W.' 9 ? primary 'DiMaio, F.' 10 ? primary 'Yeates, T.O.' 11 0000-0001-5709-9839 primary 'Baker, D.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'S2-6, London Bridge' 1374.480 1 ? ? ? 'The asymmetric unit contains half of the molecule. The second half is generated by a crystallographic symmetry operator.' 2 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DAL)N(DLY)(DHI)P(DGL)A(DSG)KH(DPR)E' _entity_poly.pdbx_seq_one_letter_code_can ANKHPEANKHPE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DAL n 1 2 ASN n 1 3 DLY n 1 4 DHI n 1 5 PRO n 1 6 DGL n 1 7 ALA n 1 8 DSG n 1 9 LYS n 1 10 HIS n 1 11 DPR n 1 12 GLU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'ab initio design' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DHI 'D-peptide linking' . D-HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DSG 'D-peptide linking' . D-ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DAL 1 1 1 DAL DAL A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 DLY 3 3 3 DLY DLY A . n A 1 4 DHI 4 4 4 DHI DHI A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 DGL 6 6 6 DGL DGL A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 DSG 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 HIS 10 10 ? ? ? A . n A 1 11 DPR 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 23 HOH HOH A . B 2 HOH 2 102 24 HOH HOH A . B 2 HOH 3 103 27 HOH HOH A . B 2 HOH 4 104 26 HOH HOH A . B 2 HOH 5 105 25 HOH HOH A . B 2 HOH 6 106 22 HOH HOH A . B 2 HOH 7 107 31 HOH HOH A . B 2 HOH 8 108 28 HOH HOH A . B 2 HOH 9 109 29 HOH HOH A . B 2 HOH 10 110 32 HOH HOH A . B 2 HOH 11 111 30 HOH HOH A . B 2 HOH 12 112 21 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20170923 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20170923 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16-3549 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6UF8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.720 _cell.length_a_esd ? _cell.length_b 32.720 _cell.length_b_esd ? _cell.length_c 25.440 _cell.length_c_esd ? _cell.volume 23587.090 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 148 _symmetry.space_group_name_Hall '-R 3' _symmetry.space_group_name_H-M 'H -3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UF8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 34.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M phosphate/citrate pH 4.2, 40% (v/v) PEG 300' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 9.919 _reflns.entry_id 6UF8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.800 _reflns.d_resolution_low 18.93 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10306 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.695 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.880 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.062 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.060 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 0.800 0.820 ? 2.540 ? ? ? ? 474 60.800 ? ? ? ? 0.280 ? ? ? ? ? ? ? ? 2.211 ? ? ? ? 0.364 ? ? 1 1 0.909 ? 0.820 0.840 ? 4.000 ? ? ? ? 763 96.700 ? ? ? ? 0.211 ? ? ? ? ? ? ? ? 3.058 ? ? ? ? 0.257 ? ? 2 1 0.956 ? 0.840 0.870 ? 5.400 ? ? ? ? 727 97.200 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 3.298 ? ? ? ? 0.176 ? ? 3 1 0.985 ? 0.870 0.890 ? 7.870 ? ? ? ? 718 98.200 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? 3.493 ? ? ? ? 0.116 ? ? 4 1 0.992 ? 0.890 0.920 ? 9.740 ? ? ? ? 701 99.700 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 4.051 ? ? ? ? 0.102 ? ? 5 1 0.993 ? 0.920 0.960 ? 11.960 ? ? ? ? 662 99.300 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 4.340 ? ? ? ? 0.084 ? ? 6 1 0.995 ? 0.960 0.990 ? 15.310 ? ? ? ? 690 100.000 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 5.296 ? ? ? ? 0.075 ? ? 7 1 0.997 ? 0.990 1.030 ? 18.130 ? ? ? ? 620 99.200 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 5.477 ? ? ? ? 0.067 ? ? 8 1 0.996 ? 1.030 1.080 ? 21.450 ? ? ? ? 617 99.500 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 5.713 ? ? ? ? 0.062 ? ? 9 1 0.997 ? 1.080 1.130 ? 23.020 ? ? ? ? 568 99.800 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 6.040 ? ? ? ? 0.059 ? ? 10 1 0.998 ? 1.130 1.190 ? 23.960 ? ? ? ? 538 98.500 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 6.019 ? ? ? ? 0.055 ? ? 11 1 0.997 ? 1.190 1.270 ? 26.680 ? ? ? ? 529 100.000 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 6.991 ? ? ? ? 0.055 ? ? 12 1 0.995 ? 1.270 1.350 ? 28.040 ? ? ? ? 501 99.800 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 7.395 ? ? ? ? 0.052 ? ? 13 1 0.998 ? 1.350 1.460 ? 31.280 ? ? ? ? 444 98.000 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 8.599 ? ? ? ? 0.049 ? ? 14 1 0.999 ? 1.460 1.600 ? 36.380 ? ? ? ? 433 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 10.155 ? ? ? ? 0.049 ? ? 15 1 0.999 ? 1.600 1.790 ? 36.730 ? ? ? ? 370 100.000 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 9.859 ? ? ? ? 0.053 ? ? 16 1 0.999 ? 1.790 2.070 ? 35.510 ? ? ? ? 339 98.800 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 9.012 ? ? ? ? 0.054 ? ? 17 1 0.998 ? 2.070 2.530 ? 37.970 ? ? ? ? 285 100.000 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 9.596 ? ? ? ? 0.062 ? ? 18 1 0.996 ? 2.530 3.580 ? 34.420 ? ? ? ? 214 98.200 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 7.958 ? ? ? ? 0.068 ? ? 19 1 0.992 ? 3.580 18.93 ? 29.640 ? ? ? ? 113 95.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 6.062 ? ? ? ? 0.076 ? ? 20 1 0.988 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 15.27 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UF8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.80 _refine.ls_d_res_low 16.36 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10290 _refine.ls_number_reflns_R_free 1019 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.01 _refine.ls_percent_reflns_R_free 9.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1460 _refine.ls_R_factor_R_free 0.1483 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1458 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 11.2647 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0591 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.80 _refine_hist.d_res_low 16.36 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 60 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 48 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0080 ? 63 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4129 ? 85 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0670 ? 8 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0200 ? 11 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 28.5270 ? 29 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.80 0.84 . . 119 1074 78.02 . . . 0.3138 . 0.2833 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.84 0.90 . . 149 1340 97.70 . . . 0.1596 . 0.1592 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.90 0.96 . . 153 1369 99.54 . . . 0.1327 . 0.1313 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.96 1.06 . . 153 1379 99.48 . . . 0.0908 . 0.1062 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.06 1.21 . . 154 1386 99.42 . . . 0.0986 . 0.0951 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.21 1.53 . . 137 1363 99.34 . . . 0.1281 . 0.1121 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.53 16.36 . . 154 1360 98.50 . . . 0.1744 . 0.1750 . . . . . . . . . . # _struct.entry_id 6UF8 _struct.title 'S2 symmetric peptide design number 6, London Bridge' _struct.pdbx_model_details 'S2 symmetric cyclic peptide' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UF8 _struct_keywords.text 'cyclic peptide, centrosymmetric macrocycle, L- and D-amino acids, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UF8 _struct_ref.pdbx_db_accession 6UF8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6UF8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6UF8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -x+2/3,-y+1/3,-z+1/3 -1.0000000000 0.0000000000 0.0000000000 16.3600000000 0.0000000000 -1.0000000000 0.0000000000 9.4454504039 0.0000000000 0.0000000000 -1.0000000000 8.4800000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DAL 1 C ? ? ? 1_555 A ASN 2 N ? ? A DAL 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A DAL 1 N ? ? ? 1_555 A DGL 6 C ? ? A DAL 1 A DGL 6 10_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A ASN 2 C ? ? ? 1_555 A DLY 3 N ? ? A ASN 2 A DLY 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A DLY 3 C ? ? ? 1_555 A DHI 4 N ? ? A DLY 3 A DHI 4 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale5 covale both ? A DHI 4 C ? ? ? 1_555 A PRO 5 N ? ? A DHI 4 A PRO 5 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale6 covale both ? A PRO 5 C ? ? ? 1_555 A DGL 6 N ? ? A PRO 5 A DGL 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id DAL _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id DGL _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 6 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id DAL _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id DGL _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 6 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 10_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom C _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Non-standard linkage' # _pdbx_entry_details.entry_id 6UF8 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details 'The asymmetric unit contains half of the molecule. The second half is generated by a crystallographic symmetry operator.' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 112 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 -x,-y,-z 5 y,-x+y,-z 6 x-y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 -x+1/3,-y+2/3,-z+2/3 11 y+1/3,-x+y+2/3,-z+2/3 12 x-y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 -x+2/3,-y+1/3,-z+1/3 17 y+2/3,-x+y+1/3,-z+1/3 18 x-y+2/3,x+1/3,-z+1/3 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 112 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.82 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 7 ? A ALA 7 2 1 Y 1 A DSG 8 ? A DSG 8 3 1 Y 1 A LYS 9 ? A LYS 9 4 1 Y 1 A HIS 10 ? A HIS 10 5 1 Y 1 A DPR 11 ? A DPR 11 6 1 Y 1 A GLU 12 ? A GLU 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 DAL N N N N 31 DAL CA C N R 32 DAL CB C N N 33 DAL C C N N 34 DAL O O N N 35 DAL OXT O N N 36 DAL H H N N 37 DAL H2 H N N 38 DAL HA H N N 39 DAL HB1 H N N 40 DAL HB2 H N N 41 DAL HB3 H N N 42 DAL HXT H N N 43 DGL N N N N 44 DGL CA C N R 45 DGL C C N N 46 DGL O O N N 47 DGL CB C N N 48 DGL CG C N N 49 DGL CD C N N 50 DGL OE1 O N N 51 DGL OE2 O N N 52 DGL OXT O N N 53 DGL H H N N 54 DGL H2 H N N 55 DGL HA H N N 56 DGL HB2 H N N 57 DGL HB3 H N N 58 DGL HG2 H N N 59 DGL HG3 H N N 60 DGL HE2 H N N 61 DGL HXT H N N 62 DHI N N N N 63 DHI CA C N R 64 DHI C C N N 65 DHI O O N N 66 DHI CB C N N 67 DHI CG C Y N 68 DHI ND1 N Y N 69 DHI CD2 C Y N 70 DHI CE1 C Y N 71 DHI NE2 N Y N 72 DHI OXT O N N 73 DHI H H N N 74 DHI H2 H N N 75 DHI HA H N N 76 DHI HB2 H N N 77 DHI HB3 H N N 78 DHI HD1 H N N 79 DHI HD2 H N N 80 DHI HE1 H N N 81 DHI HE2 H N N 82 DHI HXT H N N 83 DLY N N N N 84 DLY CA C N R 85 DLY C C N N 86 DLY O O N N 87 DLY CB C N N 88 DLY CG C N N 89 DLY CD C N N 90 DLY CE C N N 91 DLY NZ N N N 92 DLY OXT O N N 93 DLY H H N N 94 DLY H2 H N N 95 DLY HA H N N 96 DLY HB2 H N N 97 DLY HB3 H N N 98 DLY HG2 H N N 99 DLY HG3 H N N 100 DLY HD2 H N N 101 DLY HD3 H N N 102 DLY HE2 H N N 103 DLY HE3 H N N 104 DLY HZ1 H N N 105 DLY HZ2 H N N 106 DLY HXT H N N 107 DPR N N N N 108 DPR CA C N R 109 DPR CB C N N 110 DPR CG C N N 111 DPR CD C N N 112 DPR C C N N 113 DPR O O N N 114 DPR OXT O N N 115 DPR H H N N 116 DPR HA H N N 117 DPR HB2 H N N 118 DPR HB3 H N N 119 DPR HG2 H N N 120 DPR HG3 H N N 121 DPR HD2 H N N 122 DPR HD3 H N N 123 DPR HXT H N N 124 DSG N N N N 125 DSG CA C N R 126 DSG C C N N 127 DSG O O N N 128 DSG CB C N N 129 DSG CG C N N 130 DSG OD1 O N N 131 DSG ND2 N N N 132 DSG OXT O N N 133 DSG H H N N 134 DSG H2 H N N 135 DSG HA H N N 136 DSG HB2 H N N 137 DSG HB3 H N N 138 DSG HD21 H N N 139 DSG HD22 H N N 140 DSG HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 LYS N N N N 185 LYS CA C N S 186 LYS C C N N 187 LYS O O N N 188 LYS CB C N N 189 LYS CG C N N 190 LYS CD C N N 191 LYS CE C N N 192 LYS NZ N N N 193 LYS OXT O N N 194 LYS H H N N 195 LYS H2 H N N 196 LYS HA H N N 197 LYS HB2 H N N 198 LYS HB3 H N N 199 LYS HG2 H N N 200 LYS HG3 H N N 201 LYS HD2 H N N 202 LYS HD3 H N N 203 LYS HE2 H N N 204 LYS HE3 H N N 205 LYS HZ1 H N N 206 LYS HZ2 H N N 207 LYS HZ3 H N N 208 LYS HXT H N N 209 PRO N N N N 210 PRO CA C N S 211 PRO C C N N 212 PRO O O N N 213 PRO CB C N N 214 PRO CG C N N 215 PRO CD C N N 216 PRO OXT O N N 217 PRO H H N N 218 PRO HA H N N 219 PRO HB2 H N N 220 PRO HB3 H N N 221 PRO HG2 H N N 222 PRO HG3 H N N 223 PRO HD2 H N N 224 PRO HD3 H N N 225 PRO HXT H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 DAL N CA sing N N 29 DAL N H sing N N 30 DAL N H2 sing N N 31 DAL CA CB sing N N 32 DAL CA C sing N N 33 DAL CA HA sing N N 34 DAL CB HB1 sing N N 35 DAL CB HB2 sing N N 36 DAL CB HB3 sing N N 37 DAL C O doub N N 38 DAL C OXT sing N N 39 DAL OXT HXT sing N N 40 DGL N CA sing N N 41 DGL N H sing N N 42 DGL N H2 sing N N 43 DGL CA C sing N N 44 DGL CA CB sing N N 45 DGL CA HA sing N N 46 DGL C O doub N N 47 DGL C OXT sing N N 48 DGL CB CG sing N N 49 DGL CB HB2 sing N N 50 DGL CB HB3 sing N N 51 DGL CG CD sing N N 52 DGL CG HG2 sing N N 53 DGL CG HG3 sing N N 54 DGL CD OE1 doub N N 55 DGL CD OE2 sing N N 56 DGL OE2 HE2 sing N N 57 DGL OXT HXT sing N N 58 DHI N CA sing N N 59 DHI N H sing N N 60 DHI N H2 sing N N 61 DHI CA C sing N N 62 DHI CA CB sing N N 63 DHI CA HA sing N N 64 DHI C O doub N N 65 DHI C OXT sing N N 66 DHI CB CG sing N N 67 DHI CB HB2 sing N N 68 DHI CB HB3 sing N N 69 DHI CG ND1 sing Y N 70 DHI CG CD2 doub Y N 71 DHI ND1 CE1 doub Y N 72 DHI ND1 HD1 sing N N 73 DHI CD2 NE2 sing Y N 74 DHI CD2 HD2 sing N N 75 DHI CE1 NE2 sing Y N 76 DHI CE1 HE1 sing N N 77 DHI NE2 HE2 sing N N 78 DHI OXT HXT sing N N 79 DLY N CA sing N N 80 DLY N H sing N N 81 DLY N H2 sing N N 82 DLY CA C sing N N 83 DLY CA CB sing N N 84 DLY CA HA sing N N 85 DLY C O doub N N 86 DLY C OXT sing N N 87 DLY CB CG sing N N 88 DLY CB HB2 sing N N 89 DLY CB HB3 sing N N 90 DLY CG CD sing N N 91 DLY CG HG2 sing N N 92 DLY CG HG3 sing N N 93 DLY CD CE sing N N 94 DLY CD HD2 sing N N 95 DLY CD HD3 sing N N 96 DLY CE NZ sing N N 97 DLY CE HE2 sing N N 98 DLY CE HE3 sing N N 99 DLY NZ HZ1 sing N N 100 DLY NZ HZ2 sing N N 101 DLY OXT HXT sing N N 102 DPR N CA sing N N 103 DPR N CD sing N N 104 DPR N H sing N N 105 DPR CA CB sing N N 106 DPR CA C sing N N 107 DPR CA HA sing N N 108 DPR CB CG sing N N 109 DPR CB HB2 sing N N 110 DPR CB HB3 sing N N 111 DPR CG CD sing N N 112 DPR CG HG2 sing N N 113 DPR CG HG3 sing N N 114 DPR CD HD2 sing N N 115 DPR CD HD3 sing N N 116 DPR C O doub N N 117 DPR C OXT sing N N 118 DPR OXT HXT sing N N 119 DSG N CA sing N N 120 DSG N H sing N N 121 DSG N H2 sing N N 122 DSG CA C sing N N 123 DSG CA CB sing N N 124 DSG CA HA sing N N 125 DSG C O doub N N 126 DSG C OXT sing N N 127 DSG CB CG sing N N 128 DSG CB HB2 sing N N 129 DSG CB HB3 sing N N 130 DSG CG OD1 doub N N 131 DSG CG ND2 sing N N 132 DSG ND2 HD21 sing N N 133 DSG ND2 HD22 sing N N 134 DSG OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 HIS N CA sing N N 154 HIS N H sing N N 155 HIS N H2 sing N N 156 HIS CA C sing N N 157 HIS CA CB sing N N 158 HIS CA HA sing N N 159 HIS C O doub N N 160 HIS C OXT sing N N 161 HIS CB CG sing N N 162 HIS CB HB2 sing N N 163 HIS CB HB3 sing N N 164 HIS CG ND1 sing Y N 165 HIS CG CD2 doub Y N 166 HIS ND1 CE1 doub Y N 167 HIS ND1 HD1 sing N N 168 HIS CD2 NE2 sing Y N 169 HIS CD2 HD2 sing N N 170 HIS CE1 NE2 sing Y N 171 HIS CE1 HE1 sing N N 172 HIS NE2 HE2 sing N N 173 HIS OXT HXT sing N N 174 HOH O H1 sing N N 175 HOH O H2 sing N N 176 LYS N CA sing N N 177 LYS N H sing N N 178 LYS N H2 sing N N 179 LYS CA C sing N N 180 LYS CA CB sing N N 181 LYS CA HA sing N N 182 LYS C O doub N N 183 LYS C OXT sing N N 184 LYS CB CG sing N N 185 LYS CB HB2 sing N N 186 LYS CB HB3 sing N N 187 LYS CG CD sing N N 188 LYS CG HG2 sing N N 189 LYS CG HG3 sing N N 190 LYS CD CE sing N N 191 LYS CD HD2 sing N N 192 LYS CD HD3 sing N N 193 LYS CE NZ sing N N 194 LYS CE HE2 sing N N 195 LYS CE HE3 sing N N 196 LYS NZ HZ1 sing N N 197 LYS NZ HZ2 sing N N 198 LYS NZ HZ3 sing N N 199 LYS OXT HXT sing N N 200 PRO N CA sing N N 201 PRO N CD sing N N 202 PRO N H sing N N 203 PRO CA C sing N N 204 PRO CA CB sing N N 205 PRO CA HA sing N N 206 PRO C O doub N N 207 PRO C OXT sing N N 208 PRO CB CG sing N N 209 PRO CB HB2 sing N N 210 PRO CB HB3 sing N N 211 PRO CG CD sing N N 212 PRO CG HG2 sing N N 213 PRO CG HG3 sing N N 214 PRO CD HD2 sing N N 215 PRO CD HD3 sing N N 216 PRO OXT HXT sing N N 217 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1 'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 2 # _space_group.name_H-M_alt 'R -3 :H' _space_group.name_Hall '-R 3' _space_group.IT_number 148 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 6UF8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.030562 _atom_sites.fract_transf_matrix[1][2] 0.017645 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035290 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039308 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 3.21184 3.04156 1.73156 ? 18.83700 5.90590 0.24126 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_