data_6UGB # _entry.id 6UGB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.336 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6UGB WWPDB D_1000244575 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UGB _pdbx_database_status.recvd_initial_deposition_date 2019-09-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mulligan, V.K.' 1 0000-0001-6038-8922 'Kang, C.S.' 2 0000-0003-0959-0783 'Antselovich, I.' 3 0000-0002-2208-9937 'Sawaya, M.R.' 4 0000-0003-0874-9043 'Yeates, T.O.' 5 0000-0001-5709-9839 'Baker, D.' 6 0000-0001-7896-6217 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 29 _citation.language ? _citation.page_first 2433 _citation.page_last 2445 _citation.title 'Computational design of mixed chirality peptide macrocycles with internal symmetry.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3974 _citation.pdbx_database_id_PubMed 33058266 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mulligan, V.K.' 1 0000-0001-6038-8922 primary 'Kang, C.S.' 2 0000-0003-0959-0783 primary 'Sawaya, M.R.' 3 ? primary 'Rettie, S.' 4 ? primary 'Li, X.' 5 ? primary 'Antselovich, I.' 6 ? primary 'Craven, T.W.' 7 ? primary 'Watkins, A.M.' 8 ? primary 'Labonte, J.W.' 9 ? primary 'DiMaio, F.' 10 ? primary 'Yeates, T.O.' 11 0000-0001-5709-9839 primary 'Baker, D.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6UGB _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.720 _cell.length_a_esd ? _cell.length_b 24.720 _cell.length_b_esd ? _cell.length_c 19.590 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 147 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'C3 symmetric peptide design number 2, Baby Basil' 387.412 2 ? ? ? ;The crystal contains a racemic mixture of the peptide. Chain A corresponds to 1/3 of the cyclic peptide. Chain B corresponds to 1/3 of another copy of the cyclic peptide. ; 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer nat 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PRD _entity_poly.pdbx_seq_one_letter_code_can PRD _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 ASP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 3 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UGB _struct_ref.pdbx_db_accession 6UGB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UGB A 1 ? 3 ? 6UGB 1 ? 3 ? 1 3 2 1 6UGB B 1 ? 3 ? 6UGB 1 ? 3 ? 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UGB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M zinc acetate, 0.1 M imidazole pH 8.0, 2.5 M sodium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-08-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.77490 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.77490 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 11.649 _reflns.entry_id 6UGB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.950 _reflns.d_resolution_low 21.41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7972 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.865 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.440 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.908 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.075 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 0.950 0.970 ? 1.160 ? ? ? ? 591 95.300 ? ? ? ? 1.122 ? ? ? ? ? ? ? ? 2.531 ? ? ? ? 1.398 ? ? 1 1 0.393 ? ? 0.970 1.000 ? 1.420 ? ? ? ? 589 96.400 ? ? ? ? 0.949 ? ? ? ? ? ? ? ? 2.699 ? ? ? ? 1.175 ? ? 2 1 0.695 ? ? 1.000 1.030 ? 2.150 ? ? ? ? 567 94.700 ? ? ? ? 0.589 ? ? ? ? ? ? ? ? 2.550 ? ? ? ? 0.733 ? ? 3 1 0.869 ? ? 1.030 1.060 ? 3.080 ? ? ? ? 572 98.600 ? ? ? ? 0.440 ? ? ? ? ? ? ? ? 2.673 ? ? ? ? 0.542 ? ? 4 1 0.882 ? ? 1.060 1.100 ? 4.660 ? ? ? ? 538 96.800 ? ? ? ? 0.274 ? ? ? ? ? ? ? ? 2.825 ? ? ? ? 0.337 ? ? 5 1 0.943 ? ? 1.100 1.130 ? 5.210 ? ? ? ? 518 97.000 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 2.884 ? ? ? ? 0.304 ? ? 6 1 0.957 ? ? 1.130 1.180 ? 6.020 ? ? ? ? 522 96.500 ? ? ? ? 0.192 ? ? ? ? ? ? ? ? 2.895 ? ? ? ? 0.233 ? ? 7 1 0.966 ? ? 1.180 1.230 ? 6.660 ? ? ? ? 462 93.900 ? ? ? ? 0.154 ? ? ? ? ? ? ? ? 2.762 ? ? ? ? 0.189 ? ? 8 1 0.978 ? ? 1.230 1.280 ? 7.870 ? ? ? ? 452 95.400 ? ? ? ? 0.125 ? ? ? ? ? ? ? ? 2.648 ? ? ? ? 0.153 ? ? 9 1 0.985 ? ? 1.280 1.340 ? 9.110 ? ? ? ? 433 95.800 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 3.092 ? ? ? ? 0.123 ? ? 10 1 0.989 ? ? 1.340 1.420 ? 11.330 ? ? ? ? 428 93.900 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 3.014 ? ? ? ? 0.099 ? ? 11 1 0.989 ? ? 1.420 1.500 ? 13.040 ? ? ? ? 387 93.700 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 3.054 ? ? ? ? 0.079 ? ? 12 1 0.993 ? ? 1.500 1.600 ? 14.620 ? ? ? ? 348 92.800 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 3.000 ? ? ? ? 0.075 ? ? 13 1 0.992 ? ? 1.600 1.730 ? 14.020 ? ? ? ? 319 88.100 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 2.824 ? ? ? ? 0.065 ? ? 14 1 0.995 ? ? 1.730 1.900 ? 18.070 ? ? ? ? 310 90.900 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 3.165 ? ? ? ? 0.056 ? ? 15 1 0.996 ? ? 1.900 2.120 ? 18.700 ? ? ? ? 287 92.300 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 3.282 ? ? ? ? 0.059 ? ? 16 1 0.995 ? ? 2.120 2.450 ? 19.380 ? ? ? ? 232 87.900 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 3.220 ? ? ? ? 0.059 ? ? 17 1 0.996 ? ? 2.450 3.000 ? 20.680 ? ? ? ? 188 87.400 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 3.213 ? ? ? ? 0.050 ? ? 18 1 0.999 ? ? 3.000 4.250 ? 21.140 ? ? ? ? 151 83.000 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 3.066 ? ? ? ? 0.052 ? ? 19 1 0.995 ? ? 4.250 21.41 ? 23.320 ? ? ? ? 78 82.100 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 3.667 ? ? ? ? 0.057 ? ? 20 1 0.996 ? ? # _refine.aniso_B[1][1] 0.380 _refine.aniso_B[1][2] 0.190 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.380 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -1.234 _refine.B_iso_max ? _refine.B_iso_mean 13.336 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.981 _refine.details 'Hydrogens have been used if present in the input file' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UGB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.950 _refine.ls_d_res_low 21.408 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7956 _refine.ls_number_reflns_R_free 834 _refine.ls_number_reflns_R_work 7122 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.265 _refine.ls_percent_reflns_R_free 10.483 _refine.ls_R_factor_all 0.160 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1618 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1593 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.176 _refine.ls_wR_factor_R_work 0.160 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.017 _refine.pdbx_overall_ESU_R_Free 0.017 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.287 _refine.overall_SU_ML 0.007 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9691 _refine.pdbx_average_fsc_free 0.9691 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.950 _refine_hist.d_res_low 21.408 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 66 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 52 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.013 59 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 59 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.880 1.847 75 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.447 1.626 136 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.747 5.000 4 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 6.423 15.000 8 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.844 15.000 11 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 18.716 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.106 0.200 7 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 54 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 19 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.452 0.200 9 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.229 0.200 29 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.140 0.200 17 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.092 0.200 19 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.115 0.200 5 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.745 0.200 32 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.172 0.200 39 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.464 0.200 3 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.033 0.200 5 ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.909 1.021 22 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.907 1.031 21 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.286 1.566 24 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.260 1.549 25 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.123 1.276 37 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.177 1.303 35 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.511 1.842 51 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.511 1.839 51 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 1.703 9.958 54 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 1.809 9.477 46 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 0.865 3.000 118 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.950 0.975 591 . 62 517 97.9695 . 0.571 . 0.605 . 0.567 . . . . . 0.515 . 20 . 0.857 0.868 'X-RAY DIFFRACTION' 0.975 1.001 623 . 84 517 96.4687 . 0.526 . 0.486 . 0.533 . . . . . 0.461 . 20 . 0.892 0.923 'X-RAY DIFFRACTION' 1.001 1.030 584 . 48 504 94.5205 . 0.363 . 0.349 . 0.364 . . . . . 0.294 . 20 . 0.945 0.946 'X-RAY DIFFRACTION' 1.030 1.062 579 . 66 505 98.6183 . 0.244 . 0.239 . 0.244 . . . . . 0.189 . 20 . 0.970 0.973 'X-RAY DIFFRACTION' 1.062 1.097 558 . 66 474 96.7742 . 0.187 . 0.174 . 0.188 . . . . . 0.152 . 20 . 0.983 0.984 'X-RAY DIFFRACTION' 1.097 1.135 536 . 45 475 97.0149 . 0.168 . 0.163 . 0.168 . . . . . 0.144 . 20 . 0.988 0.982 'X-RAY DIFFRACTION' 1.135 1.178 537 . 47 471 96.4618 . 0.164 . 0.181 . 0.162 . . . . . 0.141 . 20 . 0.990 0.983 'X-RAY DIFFRACTION' 1.178 1.226 492 . 39 423 93.9024 . 0.149 . 0.179 . 0.147 . . . . . 0.129 . 20 . 0.991 0.982 'X-RAY DIFFRACTION' 1.226 1.280 470 . 48 400 95.3192 . 0.136 . 0.159 . 0.133 . . . . . 0.118 . 20 . 0.992 0.990 'X-RAY DIFFRACTION' 1.280 1.342 456 . 31 406 95.8333 . 0.119 . 0.110 . 0.120 . . . . . 0.108 . 20 . 0.993 0.992 'X-RAY DIFFRACTION' 1.342 1.414 444 . 37 380 93.9189 . 0.091 . 0.118 . 0.089 . . . . . 0.085 . 20 . 0.995 0.993 'X-RAY DIFFRACTION' 1.414 1.500 417 . 49 341 93.5252 . 0.087 . 0.077 . 0.089 . . . . . 0.090 . 20 . 0.996 0.997 'X-RAY DIFFRACTION' 1.500 1.603 383 . 40 316 92.9504 . 0.085 . 0.101 . 0.083 . . . . . 0.089 . 20 . 0.996 0.994 'X-RAY DIFFRACTION' 1.603 1.730 358 . 17 298 87.9888 . 0.108 . 0.139 . 0.106 . . . . . 0.120 . 20 . 0.994 0.992 'X-RAY DIFFRACTION' 1.730 1.894 345 . 48 266 91.0145 . 0.109 . 0.116 . 0.107 . . . . . 0.135 . 20 . 0.994 0.993 'X-RAY DIFFRACTION' 1.894 2.116 299 . 27 248 91.9732 . 0.129 . 0.104 . 0.133 . . . . . 0.175 . 20 . 0.991 0.994 'X-RAY DIFFRACTION' 2.116 2.439 275 . 40 204 88.7273 . 0.143 . 0.180 . 0.136 . . . . . 0.181 . 20 . 0.990 0.981 'X-RAY DIFFRACTION' 2.439 2.978 212 . 22 162 86.7924 . 0.138 . 0.098 . 0.147 . . . . . 0.222 . 20 . 0.988 0.996 'X-RAY DIFFRACTION' 2.978 4.171 176 . 8 139 83.5227 . 0.176 . 0.189 . 0.176 . . . . . 0.250 . 20 . 0.982 0.985 'X-RAY DIFFRACTION' 4.171 21.408 105 . 10 76 81.9048 . 0.273 . 0.334 . 0.266 . . . . . 0.428 . 20 . 0.962 0.958 # _struct.entry_id 6UGB _struct.title 'C3 symmetric peptide design number 2, Baby Basil' _struct.pdbx_descriptor 'C2-1, Zappy, crystal form 1' _struct.pdbx_model_details 'S2 symmetric cyclic peptide' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UGB _struct_keywords.text 'cyclic peptide, 3-fold symmetric, racemic mixture, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 2 ? I N N 5 ? J N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 1 N ? ? ? 1_555 A ASP 3 C ? ? A PRO 1 A ASP 3 2_665 ? ? ? ? ? ? ? 1.339 sing ? covale2 covale both ? B PRO 1 N ? ? ? 1_555 B ASP 3 C ? ? B PRO 1 B ASP 3 3_565 ? ? ? ? ? ? ? 1.339 sing ? metalc1 metalc ? ? A ASP 3 O ? ? ? 1_555 C NA . NA ? ? A ASP 3 A NA 101 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc2 metalc ? ? A ASP 3 O ? ? ? 1_555 C NA . NA ? ? A ASP 3 A NA 101 2_665 ? ? ? ? ? ? ? 2.367 ? ? metalc3 metalc ? ? A ASP 3 OD2 ? ? ? 1_555 D NA . NA ? ? A ASP 3 A NA 102 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc4 metalc ? ? A ASP 3 OD2 ? ? ? 1_555 D NA . NA ? ? A ASP 3 A NA 102 2_665 ? ? ? ? ? ? ? 2.432 ? ? metalc5 metalc ? ? A ASP 3 OD2 ? ? ? 1_555 E ZN . ZN ? ? A ASP 3 B ZN 101 2_665 ? ? ? ? ? ? ? 1.980 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc7 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 101 A HOH 202 3_565 ? ? ? ? ? ? ? 2.426 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 B ASP 3 OD2 ? ? A NA 102 B ASP 3 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc9 metalc ? ? D NA . NA ? ? ? 2_665 B ASP 3 OD2 ? ? A NA 102 B ASP 3 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc10 metalc ? ? B ASP 3 OD2 ? ? ? 1_555 E ZN . ZN ? ? B ASP 3 B ZN 101 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc11 metalc ? ? B ASP 3 O ? ? ? 1_555 H NA . NA ? ? B ASP 3 B NA 104 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc12 metalc ? ? B ASP 3 O ? ? ? 1_555 H NA . NA ? ? B ASP 3 B NA 104 2_665 ? ? ? ? ? ? ? 2.400 ? ? metalc13 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 104 B HOH 201 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc14 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 104 B HOH 201 2_665 ? ? ? ? ? ? ? 2.428 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _atom_sites.entry_id 6UGB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.040453 _atom_sites.fract_transf_matrix[1][2] 0.023356 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046711 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.051046 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 CL 17 17 11.460 0.010 7.196 1.166 6.255 18.519 1.645 47.778 -9.557 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 NA 11 11 4.766 3.285 3.176 8.842 1.268 0.314 1.114 129.424 0.676 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 ZN 30 30 14.082 3.266 7.036 0.233 5.165 10.316 2.411 58.710 1.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ASP 3 3 3 ASP ASP A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 ASP 3 3 3 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 101 10 NA NA A . D 2 NA 1 102 13 NA NA A . E 3 ZN 1 101 10 ZN ZN B . F 4 CL 1 102 11 CL CL B . G 4 CL 1 103 12 CL CL B . H 2 NA 1 104 14 NA NA B . I 5 HOH 1 201 12 HOH HOH A . I 5 HOH 2 202 11 HOH HOH A . I 5 HOH 3 203 13 HOH HOH A . I 5 HOH 4 204 14 HOH HOH A . J 5 HOH 1 201 15 HOH HOH B . J 5 HOH 2 202 16 HOH HOH B . J 5 HOH 3 203 18 HOH HOH B . J 5 HOH 4 204 17 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,I 2 1,2,3 B,E,F,G,H,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 12.3600000000 0.8660254038 -0.5000000000 0.0000000000 21.4081479816 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -12.3600000000 -0.8660254038 -0.5000000000 0.0000000000 21.4081479816 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 101 ? C NA . 2 1 A NA 102 ? D NA . 3 1 B NA 104 ? H NA . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 3 ? A ASP 3 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? A ASP 3 ? A ASP 3 ? 1_555 0.0 ? 2 O ? A ASP 3 ? A ASP 3 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 94.2 ? 3 O ? A ASP 3 ? A ASP 3 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 94.2 ? 4 O ? A ASP 3 ? A ASP 3 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 3_565 93.6 ? 5 O ? A ASP 3 ? A ASP 3 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 3_565 93.6 ? 6 O ? I HOH . ? A HOH 202 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 3_565 85.9 ? 7 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 0.0 ? 8 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 166.0 ? 9 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 166.0 ? 10 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 166.0 ? 11 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 166.0 ? 12 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 0.0 ? 13 OD2 ? A ASP 3 ? A ASP 3 ? 1_555 ZN ? E ZN . ? B ZN 101 ? 2_665 OD2 ? B ASP 3 ? B ASP 3 ? 1_555 64.2 ? 14 O ? B ASP 3 ? B ASP 3 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? B ASP 3 ? B ASP 3 ? 1_555 0.0 ? 15 O ? B ASP 3 ? B ASP 3 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? J HOH . ? B HOH 201 ? 1_555 96.6 ? 16 O ? B ASP 3 ? B ASP 3 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? J HOH . ? B HOH 201 ? 1_555 96.6 ? 17 O ? B ASP 3 ? B ASP 3 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? J HOH . ? B HOH 201 ? 2_665 89.8 ? 18 O ? B ASP 3 ? B ASP 3 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? J HOH . ? B HOH 201 ? 2_665 89.8 ? 19 O ? J HOH . ? B HOH 201 ? 1_555 NA ? H NA . ? B NA 104 ? 1_555 O ? J HOH . ? B HOH 201 ? 2_665 83.4 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-12-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0266 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20180126 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20180126 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? 'SHELXT actually' 5 # _pdbx_entry_details.entry_id 6UGB _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1 'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'ZINC ION' ZN 4 'CHLORIDE ION' CL 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 none ? 2 2 none ? #