HEADER OXIDOREDUCTASE 26-SEP-19 6UH2 TITLE CRYSTAL STRUCTURE OF SHORT CHAIN DEHYDROGENASE FROM LEPTOSPIRA TITLE 2 BORGPETERSENII SEROVAR HARDJO-BOVIS (STRAIN JB197) WITH BOUND NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LPBOA.00010.A.B1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA BORGPETERSENII SEROVAR HARDJO-BOVIS SOURCE 3 (STRAIN JB197); SOURCE 4 ORGANISM_TAXID: 355277; SOURCE 5 STRAIN: JB197; SOURCE 6 GENE: LBJ_1131; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, SHORT CHAIN DEHYDROGENASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 11-OCT-23 6UH2 1 REMARK REVDAT 2 18-DEC-19 6UH2 1 REMARK REVDAT 1 09-OCT-19 6UH2 0 JRNL AUTH D.R.DAVIES,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS,P.S.HORANYI JRNL TITL TBD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3584 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 2114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0030 - 4.6825 1.00 2676 151 0.1671 0.1835 REMARK 3 2 4.6825 - 3.7178 1.00 2570 129 0.1245 0.1451 REMARK 3 3 3.7178 - 3.2482 1.00 2558 141 0.1333 0.1394 REMARK 3 4 3.2482 - 2.9514 1.00 2535 134 0.1567 0.1941 REMARK 3 5 2.9514 - 2.7399 1.00 2519 135 0.1592 0.2301 REMARK 3 6 2.7399 - 2.5784 1.00 2544 126 0.1626 0.1896 REMARK 3 7 2.5784 - 2.4493 1.00 2476 157 0.1575 0.2109 REMARK 3 8 2.4493 - 2.3427 1.00 2477 162 0.1593 0.2319 REMARK 3 9 2.3427 - 2.2526 1.00 2488 164 0.1574 0.2082 REMARK 3 10 2.2526 - 2.1748 1.00 2496 148 0.1609 0.2112 REMARK 3 11 2.1748 - 2.1069 1.00 2500 132 0.1552 0.2150 REMARK 3 12 2.1069 - 2.0466 1.00 2484 129 0.1563 0.2072 REMARK 3 13 2.0466 - 1.9928 0.98 2451 131 0.1731 0.2312 REMARK 3 14 1.9928 - 1.9441 0.97 2445 126 0.1913 0.2117 REMARK 3 15 1.9441 - 1.9000 0.95 2340 149 0.2380 0.2798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3702 39.4560 7.7582 REMARK 3 T TENSOR REMARK 3 T11: 0.5356 T22: 0.4484 REMARK 3 T33: 0.5139 T12: 0.1434 REMARK 3 T13: 0.0633 T23: -0.0962 REMARK 3 L TENSOR REMARK 3 L11: 0.4359 L22: 0.3935 REMARK 3 L33: 0.0863 L12: -0.3928 REMARK 3 L13: -0.1159 L23: 0.1613 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.4604 S13: 0.6725 REMARK 3 S21: 0.1350 S22: 0.3626 S23: -0.2000 REMARK 3 S31: -0.4472 S32: -0.0338 S33: -0.2614 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1543 10.9877 -6.4637 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.1767 REMARK 3 T33: 0.2041 T12: 0.0322 REMARK 3 T13: -0.0034 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.0910 L22: 1.2302 REMARK 3 L33: 1.0084 L12: 0.1533 REMARK 3 L13: 0.3850 L23: 0.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.1950 S13: -0.2157 REMARK 3 S21: 0.2517 S22: 0.0276 S23: -0.1712 REMARK 3 S31: 0.2655 S32: 0.0920 S33: -0.0419 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5266 11.5325 -20.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1172 REMARK 3 T33: 0.1708 T12: 0.0131 REMARK 3 T13: 0.0139 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.4315 L22: 0.5429 REMARK 3 L33: 1.9691 L12: 0.0022 REMARK 3 L13: -0.3251 L23: 0.3376 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0551 S13: -0.1301 REMARK 3 S21: 0.0544 S22: -0.0064 S23: -0.0429 REMARK 3 S31: 0.1363 S32: 0.1233 S33: -0.0045 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0520 21.7861 -23.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.1119 REMARK 3 T33: 0.1439 T12: -0.0077 REMARK 3 T13: 0.0063 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3864 L22: 1.4164 REMARK 3 L33: 1.6187 L12: -0.2808 REMARK 3 L13: 0.2519 L23: 0.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.0152 S13: 0.0462 REMARK 3 S21: -0.0887 S22: 0.0438 S23: -0.1430 REMARK 3 S31: -0.0313 S32: 0.1826 S33: -0.0284 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6592 27.0795 -18.8527 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.2657 REMARK 3 T33: 0.2056 T12: 0.0217 REMARK 3 T13: 0.0341 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.6778 L22: 1.6530 REMARK 3 L33: 1.2390 L12: 0.3941 REMARK 3 L13: 0.1314 L23: -0.2864 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.2970 S13: -0.1397 REMARK 3 S21: -0.1817 S22: -0.0402 S23: -0.4024 REMARK 3 S31: 0.0829 S32: 0.3728 S33: 0.0972 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9227 31.8448 -16.5514 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1073 REMARK 3 T33: 0.1338 T12: 0.0080 REMARK 3 T13: -0.0181 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.8716 L22: 1.4397 REMARK 3 L33: 0.3467 L12: -0.4298 REMARK 3 L13: 0.0807 L23: 0.1977 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0207 S13: -0.0238 REMARK 3 S21: -0.0577 S22: 0.0078 S23: -0.0533 REMARK 3 S31: -0.0226 S32: 0.0865 S33: 0.0045 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7938 42.4520 6.0314 REMARK 3 T TENSOR REMARK 3 T11: 0.3922 T22: 0.4724 REMARK 3 T33: 0.5115 T12: 0.0289 REMARK 3 T13: 0.0512 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.7599 L22: 0.8065 REMARK 3 L33: 0.9927 L12: -0.8842 REMARK 3 L13: -1.5292 L23: 0.4936 REMARK 3 S TENSOR REMARK 3 S11: -0.2252 S12: -0.4166 S13: -0.4561 REMARK 3 S21: 0.5148 S22: 0.0530 S23: 0.7155 REMARK 3 S31: 0.1727 S32: -0.4663 S33: 0.0271 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4402 56.1825 -9.4657 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.1127 REMARK 3 T33: 0.1398 T12: -0.0228 REMARK 3 T13: -0.0386 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3574 L22: 0.3359 REMARK 3 L33: 1.6933 L12: -0.0433 REMARK 3 L13: 0.2404 L23: 0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -0.0649 S13: 0.1047 REMARK 3 S21: 0.1527 S22: -0.0439 S23: 0.0004 REMARK 3 S31: -0.4060 S32: 0.0576 S33: 0.0786 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3602 50.1572 -22.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.0872 REMARK 3 T33: 0.0603 T12: -0.0111 REMARK 3 T13: -0.0062 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.0257 L22: 1.7697 REMARK 3 L33: 1.9550 L12: -0.3013 REMARK 3 L13: 0.4230 L23: -0.0849 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0272 S13: 0.0048 REMARK 3 S21: 0.0226 S22: -0.0485 S23: 0.0850 REMARK 3 S31: -0.2082 S32: 0.0035 S33: 0.0541 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5535 38.9636 -13.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1194 REMARK 3 T33: 0.1322 T12: 0.0193 REMARK 3 T13: -0.0122 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.7932 L22: 1.6946 REMARK 3 L33: 1.2758 L12: 0.1487 REMARK 3 L13: -0.2065 L23: -0.2572 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: 0.0532 S13: 0.0677 REMARK 3 S21: 0.0522 S22: -0.0152 S23: 0.2736 REMARK 3 S31: -0.1405 S32: -0.1716 S33: -0.0276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39676 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.080 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GWR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS D8 (100 MM HEPES/MOPS, PH REMARK 280 7.5, 0.02 M EACH 1,6-HEXANEDIOL, 1-BUTANOL, (RS)-1,2-PROPANEDIOL, REMARK 280 2-PROPANOL, 1,4-BUTANEDIOL, 1,3-PROPANEDIOL, 12.5% MPD, 12.5% REMARK 280 PEG 1000, 12.5% PEG3350), 5 MM NAD+ SOAK, PH 7.50, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.21000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.21000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.21000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.63000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.21000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 GLY A 155 REMARK 465 ASP A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 ARG A 159 REMARK 465 GLY A 254 REMARK 465 ASP A 255 REMARK 465 MET B -7 REMARK 465 GLY B 155 REMARK 465 ASP B 156 REMARK 465 SER B 157 REMARK 465 GLY B 158 REMARK 465 ARG B 159 REMARK 465 GLY B 254 REMARK 465 ASP B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -4 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 LEU A 3 CG CD1 CD2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 ASN A 54 CG OD1 ND2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ILE A 153 CG1 CG2 CD1 REMARK 470 SER A 204 OG REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 GLN A 208 CG CD OE1 NE2 REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 LEU B 3 CG CD1 CD2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 ASN B 160 CG OD1 ND2 REMARK 470 GLN B 208 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 463 O HOH B 573 2.11 REMARK 500 O HOH A 580 O HOH B 618 2.13 REMARK 500 OE1 GLU A 9 O HOH A 401 2.14 REMARK 500 OE2 GLU B 9 O HOH B 401 2.16 REMARK 500 O HOH B 566 O HOH B 623 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 -3.17 67.16 REMARK 500 ALA A 200 -99.36 -140.01 REMARK 500 ASP A 248 17.66 -146.67 REMARK 500 LYS B 81 57.36 -115.32 REMARK 500 VAL B 146 -56.59 -125.43 REMARK 500 ALA B 200 -97.64 -147.04 REMARK 500 ASP B 248 14.22 -147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 595 DISTANCE = 6.34 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LPBOA.00010.A.B1 RELATED DB: TARGETTRACK DBREF 6UH2 A 1 255 UNP Q04TM7 Q04TM7_LEPBJ 1 255 DBREF 6UH2 B 1 255 UNP Q04TM7 Q04TM7_LEPBJ 1 255 SEQADV 6UH2 MET A -7 UNP Q04TM7 INITIATING METHIONINE SEQADV 6UH2 ALA A -6 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A -5 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A -4 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A -3 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A -2 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A -1 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS A 0 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 MET B -7 UNP Q04TM7 INITIATING METHIONINE SEQADV 6UH2 ALA B -6 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B -5 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B -4 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B -3 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B -2 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B -1 UNP Q04TM7 EXPRESSION TAG SEQADV 6UH2 HIS B 0 UNP Q04TM7 EXPRESSION TAG SEQRES 1 A 263 MET ALA HIS HIS HIS HIS HIS HIS MET ILE LEU LYS ASN SEQRES 2 A 263 PHE SER ASP GLU PHE GLN ASP LYS LEU VAL LEU ILE THR SEQRES 3 A 263 GLY GLY SER GLY GLN ILE GLY SER GLU LEU VAL GLU SER SEQRES 4 A 263 TYR LEU SER VAL SER ALA ARG VAL ILE CYS LEU ASP PRO SEQRES 5 A 263 GLU GLN PRO SER VAL ASP TYR LYS SER ASN ARG PHE GLU SEQRES 6 A 263 TRP ILE GLN ALA ASP ILE THR ASN ARG LYS GLU ILE LYS SEQRES 7 A 263 GLU ILE PHE LEU SER LEU GLU ASN GLN ASN LYS ILE PRO SEQRES 8 A 263 ASP ILE LEU ILE ASN CYS ALA GLY ILE SER VAL PHE THR SEQRES 9 A 263 PRO PHE GLU ASP ARG THR ASP GLU GLU PHE ASN GLU VAL SEQRES 10 A 263 VAL HIS VAL ASN LEU ASN GLY THR PHE LEU LEU SER GLN SEQRES 11 A 263 TYR THR PHE ARG LEU TRP LYS GLU LYS GLY LYS LYS GLY SEQRES 12 A 263 ILE ILE LEU ASN PHE GLY SER ILE TYR GLY VAL SER ILE SEQRES 13 A 263 ALA ASP MET ARG ILE TYR GLY ASP SER GLY ARG ASN SER SEQRES 14 A 263 PRO GLU VAL TYR ALA MET THR LYS ALA GLY ILE ILE HIS SEQRES 15 A 263 PHE THR LYS TYR LEU ALA ARG TYR ALA ALA PRO TYR GLY SEQRES 16 A 263 ILE ARG VAL ASN CYS ILE SER PRO GLY GLY ILE PHE ALA SEQRES 17 A 263 ASN GLN SER SER ASP PHE ILE GLN ASN TYR ILE TYR LYS SEQRES 18 A 263 THR PRO LEU GLY ARG MET GLY ASN PRO SER ASP LEU VAL SEQRES 19 A 263 GLY GLY VAL PHE PHE LEU THR SER SER LEU SER GLU TYR SEQRES 20 A 263 VAL THR GLY GLN ASN LEU LEU ILE ASP GLY GLY PHE THR SEQRES 21 A 263 ILE GLY ASP SEQRES 1 B 263 MET ALA HIS HIS HIS HIS HIS HIS MET ILE LEU LYS ASN SEQRES 2 B 263 PHE SER ASP GLU PHE GLN ASP LYS LEU VAL LEU ILE THR SEQRES 3 B 263 GLY GLY SER GLY GLN ILE GLY SER GLU LEU VAL GLU SER SEQRES 4 B 263 TYR LEU SER VAL SER ALA ARG VAL ILE CYS LEU ASP PRO SEQRES 5 B 263 GLU GLN PRO SER VAL ASP TYR LYS SER ASN ARG PHE GLU SEQRES 6 B 263 TRP ILE GLN ALA ASP ILE THR ASN ARG LYS GLU ILE LYS SEQRES 7 B 263 GLU ILE PHE LEU SER LEU GLU ASN GLN ASN LYS ILE PRO SEQRES 8 B 263 ASP ILE LEU ILE ASN CYS ALA GLY ILE SER VAL PHE THR SEQRES 9 B 263 PRO PHE GLU ASP ARG THR ASP GLU GLU PHE ASN GLU VAL SEQRES 10 B 263 VAL HIS VAL ASN LEU ASN GLY THR PHE LEU LEU SER GLN SEQRES 11 B 263 TYR THR PHE ARG LEU TRP LYS GLU LYS GLY LYS LYS GLY SEQRES 12 B 263 ILE ILE LEU ASN PHE GLY SER ILE TYR GLY VAL SER ILE SEQRES 13 B 263 ALA ASP MET ARG ILE TYR GLY ASP SER GLY ARG ASN SER SEQRES 14 B 263 PRO GLU VAL TYR ALA MET THR LYS ALA GLY ILE ILE HIS SEQRES 15 B 263 PHE THR LYS TYR LEU ALA ARG TYR ALA ALA PRO TYR GLY SEQRES 16 B 263 ILE ARG VAL ASN CYS ILE SER PRO GLY GLY ILE PHE ALA SEQRES 17 B 263 ASN GLN SER SER ASP PHE ILE GLN ASN TYR ILE TYR LYS SEQRES 18 B 263 THR PRO LEU GLY ARG MET GLY ASN PRO SER ASP LEU VAL SEQRES 19 B 263 GLY GLY VAL PHE PHE LEU THR SER SER LEU SER GLU TYR SEQRES 20 B 263 VAL THR GLY GLN ASN LEU LEU ILE ASP GLY GLY PHE THR SEQRES 21 B 263 ILE GLY ASP HET NAD A 301 44 HET NAD B 301 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *430(H2 O) HELIX 1 AA1 ASN A 5 GLN A 11 1 7 HELIX 2 AA2 GLY A 22 VAL A 35 1 14 HELIX 3 AA3 ASN A 65 GLN A 79 1 15 HELIX 4 AA4 PRO A 97 ARG A 101 5 5 HELIX 5 AA5 THR A 102 GLY A 132 1 31 HELIX 6 AA6 SER A 142 VAL A 146 5 5 HELIX 7 AA7 ASP A 150 TYR A 154 5 5 HELIX 8 AA8 PRO A 162 ALA A 184 1 23 HELIX 9 AA9 PRO A 185 GLY A 187 5 3 HELIX 10 AB1 SER A 203 THR A 214 1 12 HELIX 11 AB2 ASN A 221 ASP A 224 5 4 HELIX 12 AB3 LEU A 225 THR A 233 1 9 HELIX 13 AB4 SER A 234 GLU A 238 5 5 HELIX 14 AB5 LYS B 4 GLN B 11 1 8 HELIX 15 AB6 GLY B 22 VAL B 35 1 14 HELIX 16 AB7 ASN B 65 GLN B 79 1 15 HELIX 17 AB8 PRO B 97 ARG B 101 5 5 HELIX 18 AB9 THR B 102 GLY B 132 1 31 HELIX 19 AC1 SER B 142 VAL B 146 5 5 HELIX 20 AC2 ASP B 150 TYR B 154 5 5 HELIX 21 AC3 PRO B 162 ALA B 184 1 23 HELIX 22 AC4 PRO B 185 GLY B 187 5 3 HELIX 23 AC5 SER B 203 LYS B 213 1 11 HELIX 24 AC6 PRO B 222 THR B 233 1 12 HELIX 25 AC7 SER B 234 GLU B 238 5 5 SHEET 1 AA1 2 HIS A -4 LYS A 4 0 SHEET 2 AA1 2 HIS B -5 LEU B 3 1 O ILE B 2 N LYS A 4 SHEET 1 AA2 7 PHE A 56 GLN A 60 0 SHEET 2 AA2 7 ARG A 38 ASP A 43 1 N CYS A 41 O ILE A 59 SHEET 3 AA2 7 LEU A 14 THR A 18 1 N VAL A 15 O ILE A 40 SHEET 4 AA2 7 ILE A 85 ASN A 88 1 O ILE A 87 N LEU A 16 SHEET 5 AA2 7 ILE A 136 PHE A 140 1 O LEU A 138 N LEU A 86 SHEET 6 AA2 7 ARG A 189 PRO A 195 1 O ARG A 189 N ILE A 137 SHEET 7 AA2 7 ASN A 244 ILE A 247 1 O LEU A 245 N CYS A 192 SHEET 1 AA3 7 PHE B 56 GLN B 60 0 SHEET 2 AA3 7 ARG B 38 ASP B 43 1 N CYS B 41 O ILE B 59 SHEET 3 AA3 7 LEU B 14 THR B 18 1 N VAL B 15 O ILE B 40 SHEET 4 AA3 7 ILE B 85 ASN B 88 1 O ILE B 87 N LEU B 16 SHEET 5 AA3 7 ILE B 136 PHE B 140 1 O LEU B 138 N LEU B 86 SHEET 6 AA3 7 ARG B 189 PRO B 195 1 O ARG B 189 N ILE B 137 SHEET 7 AA3 7 ASN B 244 ILE B 247 1 O LEU B 245 N CYS B 192 SITE 1 AC1 26 GLY A 19 SER A 21 GLY A 22 GLN A 23 SITE 2 AC1 26 ILE A 24 ASP A 43 PRO A 44 ASP A 62 SITE 3 AC1 26 ILE A 63 CYS A 89 GLY A 91 GLY A 141 SITE 4 AC1 26 TYR A 165 LYS A 169 PRO A 195 GLY A 196 SITE 5 AC1 26 ILE A 198 HOH A 403 HOH A 405 HOH A 430 SITE 6 AC1 26 HOH A 461 HOH A 478 HOH A 488 HOH A 496 SITE 7 AC1 26 HOH A 540 ALA B -6 SITE 1 AC2 31 GLY B 19 SER B 21 GLY B 22 GLN B 23 SITE 2 AC2 31 ILE B 24 ASP B 43 PRO B 44 GLU B 45 SITE 3 AC2 31 ASP B 62 ILE B 63 CYS B 89 ALA B 90 SITE 4 AC2 31 GLY B 91 GLY B 141 SER B 142 TYR B 165 SITE 5 AC2 31 LYS B 169 PRO B 195 GLY B 196 ILE B 198 SITE 6 AC2 31 HOH B 410 HOH B 413 HOH B 469 HOH B 481 SITE 7 AC2 31 HOH B 486 HOH B 502 HOH B 508 HOH B 518 SITE 8 AC2 31 HOH B 521 HOH B 554 HOH B 557 CRYST1 63.360 131.260 120.420 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008304 0.00000