HEADER OXIDOREDUCTASE 29-SEP-19 6UHX TITLE CRYSTAL STRUCTURE OF YIR035C SHORT CHAIN DEHYDROGENASES/REDUCTASE FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED OXIDOREDUCTASE YIR035C; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YIR035C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: -MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS CYTOPLASMIC PROTEIN, OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE, KEYWDS 2 REDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,C.CHEN,O.KAGAN,A.IAKOUNINE,A.SAVCHENKO REVDAT 2 11-OCT-23 6UHX 1 REMARK REVDAT 1 05-AUG-20 6UHX 0 JRNL AUTH C.CHEN JRNL TITL CRYSTAL STRUCTURE OF YIR035C SHORT CHAIN JRNL TITL 2 DEHYDROGENASES/REDUCTASE FROM SACCHAROMYCES CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 11678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6400 - 4.3600 1.00 3146 165 0.1836 0.2366 REMARK 3 2 4.3600 - 3.4600 1.00 3093 164 0.2314 0.3220 REMARK 3 3 3.4600 - 3.0200 0.92 2834 149 0.2976 0.3991 REMARK 3 4 3.0200 - 2.7500 0.65 2021 106 0.3691 0.4648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.537 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.935 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4030 REMARK 3 ANGLE : 0.691 5480 REMARK 3 CHIRALITY : 0.042 631 REMARK 3 PLANARITY : 0.003 691 REMARK 3 DIHEDRAL : 20.749 1468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9463 16.1102 -11.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.6999 REMARK 3 T33: 0.3167 T12: -0.0008 REMARK 3 T13: -0.1077 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.9268 L22: 6.1412 REMARK 3 L33: 8.2729 L12: -0.3827 REMARK 3 L13: 1.4650 L23: -1.8844 REMARK 3 S TENSOR REMARK 3 S11: 0.2344 S12: -0.9265 S13: -0.1233 REMARK 3 S21: -0.2620 S22: 0.2805 S23: -0.4302 REMARK 3 S31: 0.5431 S32: 0.5383 S33: -0.3654 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6816 24.5319 -14.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.4354 T22: 0.3633 REMARK 3 T33: 0.3645 T12: -0.0802 REMARK 3 T13: -0.0299 T23: -0.0875 REMARK 3 L TENSOR REMARK 3 L11: 7.6979 L22: 3.0180 REMARK 3 L33: 2.2290 L12: -0.1077 REMARK 3 L13: -1.8969 L23: 0.4286 REMARK 3 S TENSOR REMARK 3 S11: 0.3318 S12: -1.1850 S13: 0.8051 REMARK 3 S21: -0.1842 S22: -0.0618 S23: -0.2069 REMARK 3 S31: -0.7247 S32: 0.7342 S33: -0.1921 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9856 15.4177 -28.5324 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.3631 REMARK 3 T33: 0.3075 T12: 0.0274 REMARK 3 T13: 0.0137 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 7.0600 L22: 2.3012 REMARK 3 L33: 9.1219 L12: -1.7669 REMARK 3 L13: 6.1661 L23: -1.5783 REMARK 3 S TENSOR REMARK 3 S11: -0.7539 S12: -1.1428 S13: -0.1357 REMARK 3 S21: -0.0017 S22: 0.6460 S23: 0.1319 REMARK 3 S31: -1.0602 S32: -1.2851 S33: -0.0131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1562 11.4405 -30.4741 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.3460 REMARK 3 T33: 0.2931 T12: 0.0227 REMARK 3 T13: -0.0578 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 4.5757 L22: 1.9050 REMARK 3 L33: 2.7412 L12: 0.3859 REMARK 3 L13: -0.1874 L23: 1.5810 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: -0.2498 S13: 0.1013 REMARK 3 S21: -0.2248 S22: 0.0214 S23: -0.0140 REMARK 3 S31: -0.1882 S32: 0.2978 S33: 0.0999 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8369 9.5639 -23.5004 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.4333 REMARK 3 T33: 0.3283 T12: -0.1264 REMARK 3 T13: -0.0429 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.0284 L22: 2.6047 REMARK 3 L33: 6.0994 L12: 0.2468 REMARK 3 L13: 0.2727 L23: 0.6792 REMARK 3 S TENSOR REMARK 3 S11: 0.2995 S12: -0.4446 S13: -0.6042 REMARK 3 S21: 0.4073 S22: -0.1598 S23: 0.3803 REMARK 3 S31: 0.2734 S32: -0.8877 S33: -0.1782 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7988 4.1483 -21.9128 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.9777 REMARK 3 T33: 1.0338 T12: -0.1697 REMARK 3 T13: -0.1032 T23: 0.2085 REMARK 3 L TENSOR REMARK 3 L11: 9.4615 L22: 9.7547 REMARK 3 L33: 0.6958 L12: 1.5979 REMARK 3 L13: 1.4149 L23: 2.2346 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -1.4979 S13: 0.4943 REMARK 3 S21: -0.3183 S22: 0.1954 S23: 1.3299 REMARK 3 S31: -0.3635 S32: -0.2076 S33: -0.1939 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8690 0.7842 -16.8465 REMARK 3 T TENSOR REMARK 3 T11: 0.7027 T22: 0.4907 REMARK 3 T33: 0.4846 T12: 0.0196 REMARK 3 T13: -0.1280 T23: 0.1573 REMARK 3 L TENSOR REMARK 3 L11: 3.1818 L22: 0.9547 REMARK 3 L33: 3.5510 L12: -0.1041 REMARK 3 L13: -1.2092 L23: 1.7568 REMARK 3 S TENSOR REMARK 3 S11: 0.2791 S12: -0.1701 S13: -0.8464 REMARK 3 S21: -0.2387 S22: -0.2574 S23: 0.2308 REMARK 3 S31: -0.0889 S32: -0.0909 S33: -0.0527 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5091 13.1737 -63.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.3842 T22: 0.6103 REMARK 3 T33: 0.3059 T12: 0.1161 REMARK 3 T13: 0.0462 T23: 0.1170 REMARK 3 L TENSOR REMARK 3 L11: 3.8626 L22: 5.6037 REMARK 3 L33: 4.4104 L12: -1.7381 REMARK 3 L13: -1.0460 L23: 0.6764 REMARK 3 S TENSOR REMARK 3 S11: 0.3791 S12: 0.9621 S13: 0.0249 REMARK 3 S21: 0.1868 S22: -0.0660 S23: 0.4169 REMARK 3 S31: -0.2744 S32: -0.4434 S33: -0.2884 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1302 10.1919 -45.5283 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.1973 REMARK 3 T33: 0.2337 T12: 0.0736 REMARK 3 T13: 0.0130 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 7.1594 L22: 1.6450 REMARK 3 L33: 4.3356 L12: 0.5485 REMARK 3 L13: 2.3662 L23: 0.7048 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.2119 S13: 0.0934 REMARK 3 S21: -0.3353 S22: -0.0581 S23: -0.0802 REMARK 3 S31: -0.1960 S32: -0.1072 S33: 0.0558 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3156 3.8335 -51.8675 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.4622 REMARK 3 T33: 0.3198 T12: -0.0126 REMARK 3 T13: -0.0613 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 4.4916 L22: 5.1049 REMARK 3 L33: 4.2038 L12: 3.5386 REMARK 3 L13: -3.7164 L23: -1.2411 REMARK 3 S TENSOR REMARK 3 S11: 0.3594 S12: 0.6438 S13: 0.6225 REMARK 3 S21: 0.3302 S22: -0.0131 S23: -0.1603 REMARK 3 S31: -0.2628 S32: 0.0802 S33: -0.2393 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1083 3.7083 -49.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.2975 T22: 0.6702 REMARK 3 T33: 0.6870 T12: -0.0507 REMARK 3 T13: 0.1126 T23: -0.1458 REMARK 3 L TENSOR REMARK 3 L11: 6.5167 L22: 4.7017 REMARK 3 L33: 8.8044 L12: -5.5423 REMARK 3 L13: 4.0498 L23: -3.7728 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: 0.0256 S13: -0.1263 REMARK 3 S21: -0.0656 S22: 0.8367 S23: -1.1550 REMARK 3 S31: -1.4975 S32: 0.5136 S33: -0.4615 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 212 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3030 -4.7047 -54.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.4384 REMARK 3 T33: 0.3403 T12: -0.0706 REMARK 3 T13: -0.0859 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 9.7282 L22: 1.7284 REMARK 3 L33: 4.1987 L12: -0.1609 REMARK 3 L13: -3.4885 L23: 2.2517 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 1.0539 S13: -0.5592 REMARK 3 S21: 0.1133 S22: -0.1611 S23: 0.2339 REMARK 3 S31: 0.1930 S32: -0.7167 S33: 0.1624 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12870 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3KZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS BUFFER, 5% ISO REMARK 280 -PROPANOL, 2.4 M AMMONIUM SULFATE, 1/1600 CHYMOTRYPSIN, 10 MM REMARK 280 NADPH, PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.52450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 58 N6A NAP A 301 1.62 REMARK 500 OD1 ASP B 58 N6A NAP B 301 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 59.43 -115.71 REMARK 500 PHE A 111 -62.40 -134.75 REMARK 500 SER A 136 -153.09 -88.11 REMARK 500 THR A 183 -169.72 -112.19 REMARK 500 ASN A 192 -84.31 -140.45 REMARK 500 VAL B 10 30.10 -93.70 REMARK 500 SER B 11 -63.11 -101.04 REMARK 500 ASN B 85 63.68 -109.89 REMARK 500 PHE B 111 -58.84 -133.77 REMARK 500 SER B 136 -156.37 -97.48 REMARK 500 ASN B 192 -79.98 -99.10 REMARK 500 PRO B 195 38.92 -73.71 REMARK 500 SER B 196 -61.67 -131.98 REMARK 500 SER B 218 0.53 -66.83 REMARK 500 LEU B 249 39.31 -99.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KZV RELATED DB: PDB DBREF 6UHX A 1 254 UNP P40579 YIV5_YEAST 1 254 DBREF 6UHX B 1 254 UNP P40579 YIV5_YEAST 1 254 SEQRES 1 A 254 MET GLY LYS VAL ILE LEU VAL THR GLY VAL SER ARG GLY SEQRES 2 A 254 ILE GLY LYS SER ILE VAL ASP VAL LEU PHE SER LEU ASP SEQRES 3 A 254 LYS ASP THR VAL VAL TYR GLY VAL ALA ARG SER GLU ALA SEQRES 4 A 254 PRO LEU LYS LYS LEU LYS GLU LYS TYR GLY ASP ARG PHE SEQRES 5 A 254 PHE TYR VAL VAL GLY ASP ILE THR GLU ASP SER VAL LEU SEQRES 6 A 254 LYS GLN LEU VAL ASN ALA ALA VAL LYS GLY HIS GLY LYS SEQRES 7 A 254 ILE ASP SER LEU VAL ALA ASN ALA GLY VAL LEU GLU PRO SEQRES 8 A 254 VAL GLN ASN VAL ASN GLU ILE ASP VAL ASN ALA TRP LYS SEQRES 9 A 254 LYS LEU TYR ASP ILE ASN PHE PHE SER ILE VAL SER LEU SEQRES 10 A 254 VAL GLY ILE ALA LEU PRO GLU LEU LYS LYS THR ASN GLY SEQRES 11 A 254 ASN VAL VAL PHE VAL SER SER ASP ALA CYS ASN MET TYR SEQRES 12 A 254 PHE SER SER TRP GLY ALA TYR GLY SER SER LYS ALA ALA SEQRES 13 A 254 LEU ASN HIS PHE ALA MET THR LEU ALA ASN GLU GLU ARG SEQRES 14 A 254 GLN VAL LYS ALA ILE ALA VAL ALA PRO GLY ILE VAL ASP SEQRES 15 A 254 THR ASP MET GLN VAL ASN ILE ARG GLU ASN VAL GLY PRO SEQRES 16 A 254 SER SER MET SER ALA GLU GLN LEU LYS MET PHE ARG GLY SEQRES 17 A 254 LEU LYS GLU ASN ASN GLN LEU LEU ASP SER SER VAL PRO SEQRES 18 A 254 ALA THR VAL TYR ALA LYS LEU ALA LEU HIS GLY ILE PRO SEQRES 19 A 254 ASP GLY VAL ASN GLY GLN TYR LEU SER TYR ASN ASP PRO SEQRES 20 A 254 ALA LEU ALA ASP PHE MET PRO SEQRES 1 B 254 MET GLY LYS VAL ILE LEU VAL THR GLY VAL SER ARG GLY SEQRES 2 B 254 ILE GLY LYS SER ILE VAL ASP VAL LEU PHE SER LEU ASP SEQRES 3 B 254 LYS ASP THR VAL VAL TYR GLY VAL ALA ARG SER GLU ALA SEQRES 4 B 254 PRO LEU LYS LYS LEU LYS GLU LYS TYR GLY ASP ARG PHE SEQRES 5 B 254 PHE TYR VAL VAL GLY ASP ILE THR GLU ASP SER VAL LEU SEQRES 6 B 254 LYS GLN LEU VAL ASN ALA ALA VAL LYS GLY HIS GLY LYS SEQRES 7 B 254 ILE ASP SER LEU VAL ALA ASN ALA GLY VAL LEU GLU PRO SEQRES 8 B 254 VAL GLN ASN VAL ASN GLU ILE ASP VAL ASN ALA TRP LYS SEQRES 9 B 254 LYS LEU TYR ASP ILE ASN PHE PHE SER ILE VAL SER LEU SEQRES 10 B 254 VAL GLY ILE ALA LEU PRO GLU LEU LYS LYS THR ASN GLY SEQRES 11 B 254 ASN VAL VAL PHE VAL SER SER ASP ALA CYS ASN MET TYR SEQRES 12 B 254 PHE SER SER TRP GLY ALA TYR GLY SER SER LYS ALA ALA SEQRES 13 B 254 LEU ASN HIS PHE ALA MET THR LEU ALA ASN GLU GLU ARG SEQRES 14 B 254 GLN VAL LYS ALA ILE ALA VAL ALA PRO GLY ILE VAL ASP SEQRES 15 B 254 THR ASP MET GLN VAL ASN ILE ARG GLU ASN VAL GLY PRO SEQRES 16 B 254 SER SER MET SER ALA GLU GLN LEU LYS MET PHE ARG GLY SEQRES 17 B 254 LEU LYS GLU ASN ASN GLN LEU LEU ASP SER SER VAL PRO SEQRES 18 B 254 ALA THR VAL TYR ALA LYS LEU ALA LEU HIS GLY ILE PRO SEQRES 19 B 254 ASP GLY VAL ASN GLY GLN TYR LEU SER TYR ASN ASP PRO SEQRES 20 B 254 ALA LEU ALA ASP PHE MET PRO HET NAP A 301 48 HET NAP B 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *104(H2 O) HELIX 1 AA1 GLY A 13 PHE A 23 1 11 HELIX 2 AA2 SER A 37 GLY A 49 1 13 HELIX 3 AA3 GLU A 61 GLY A 77 1 17 HELIX 4 AA4 ASP A 99 PHE A 111 1 13 HELIX 5 AA5 PHE A 111 THR A 128 1 18 HELIX 6 AA6 SER A 137 ASN A 141 5 5 HELIX 7 AA7 TRP A 147 GLU A 168 1 22 HELIX 8 AA8 THR A 183 ASN A 192 1 10 HELIX 9 AA9 ASN A 192 MET A 198 1 7 HELIX 10 AB1 ALA A 200 ASN A 212 1 13 HELIX 11 AB2 SER A 218 HIS A 231 1 14 HELIX 12 AB3 ASP A 246 MET A 253 5 8 HELIX 13 AB4 ARG B 12 ASP B 26 1 15 HELIX 14 AB5 SER B 37 GLY B 49 1 13 HELIX 15 AB6 GLU B 61 HIS B 76 1 16 HELIX 16 AB7 ASN B 94 ILE B 98 5 5 HELIX 17 AB8 ASP B 99 PHE B 111 1 13 HELIX 18 AB9 PHE B 111 THR B 128 1 18 HELIX 19 AC1 SER B 137 ASN B 141 5 5 HELIX 20 AC2 TRP B 147 GLU B 168 1 22 HELIX 21 AC3 THR B 183 ASN B 192 1 10 HELIX 22 AC4 VAL B 193 MET B 198 1 6 HELIX 23 AC5 ALA B 200 ASN B 212 1 13 HELIX 24 AC6 SER B 218 HIS B 231 1 14 HELIX 25 AC7 PRO B 234 ASN B 238 5 5 HELIX 26 AC8 ASP B 246 ALA B 250 5 5 SHEET 1 AA1 7 PHE A 52 VAL A 56 0 SHEET 2 AA1 7 VAL A 30 ALA A 35 1 N GLY A 33 O PHE A 53 SHEET 3 AA1 7 VAL A 4 THR A 8 1 N ILE A 5 O VAL A 30 SHEET 4 AA1 7 SER A 81 ALA A 84 1 O VAL A 83 N LEU A 6 SHEET 5 AA1 7 ASN A 131 VAL A 135 1 O VAL A 133 N ALA A 84 SHEET 6 AA1 7 LYS A 172 ALA A 177 1 O ILE A 174 N PHE A 134 SHEET 7 AA1 7 TYR A 241 SER A 243 1 O LEU A 242 N ALA A 177 SHEET 1 AA2 7 PHE B 52 VAL B 56 0 SHEET 2 AA2 7 VAL B 30 ALA B 35 1 N GLY B 33 O PHE B 53 SHEET 3 AA2 7 VAL B 4 THR B 8 1 N ILE B 5 O TYR B 32 SHEET 4 AA2 7 SER B 81 ALA B 84 1 O VAL B 83 N LEU B 6 SHEET 5 AA2 7 ASN B 131 VAL B 135 1 O VAL B 133 N LEU B 82 SHEET 6 AA2 7 LYS B 172 ALA B 177 1 O ILE B 174 N PHE B 134 SHEET 7 AA2 7 TYR B 241 SER B 243 1 O LEU B 242 N ALA B 175 CISPEP 1 GLU A 90 PRO A 91 0 1.78 CISPEP 2 GLU B 90 PRO B 91 0 5.58 SITE 1 AC1 23 GLY A 9 SER A 11 ARG A 12 ILE A 14 SITE 2 AC1 23 ARG A 36 SER A 37 GLY A 57 ASP A 58 SITE 3 AC1 23 ILE A 59 ASN A 85 ALA A 86 GLY A 87 SITE 4 AC1 23 ILE A 109 SER A 136 SER A 137 TYR A 150 SITE 5 AC1 23 LYS A 154 PRO A 178 GLY A 179 VAL A 181 SITE 6 AC1 23 THR A 183 MET A 185 GLN A 186 SITE 1 AC2 26 GLY B 9 SER B 11 ARG B 12 GLY B 13 SITE 2 AC2 26 ILE B 14 ALA B 35 ARG B 36 SER B 37 SITE 3 AC2 26 ASP B 58 ILE B 59 ASN B 85 ALA B 86 SITE 4 AC2 26 GLY B 87 VAL B 135 SER B 136 SER B 137 SITE 5 AC2 26 TYR B 150 LYS B 154 PRO B 178 GLY B 179 SITE 6 AC2 26 VAL B 181 THR B 183 ASP B 184 MET B 185 SITE 7 AC2 26 GLN B 186 HOH B 421 CRYST1 51.545 73.049 67.800 90.00 100.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019401 0.000000 0.003469 0.00000 SCALE2 0.000000 0.013689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014983 0.00000