HEADER TRANSCRIPTION 01-OCT-19 6UIK TITLE DISCOVERY OF FRAGMENT-INSPIRED HETEROCYCLIC BENZENESULFONMIDES AS TITLE 2 INHIBITORS OF THE WDR5-MYC INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT DOMANIN 5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS WDR5, MYC, STRUCTURE-BASED DESIGN, FRAGMENT SCREENING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO REVDAT 3 11-OCT-23 6UIK 1 REMARK REVDAT 2 06-MAY-20 6UIK 1 JRNL REVDAT 1 15-APR-20 6UIK 0 JRNL AUTH S.CHACON SIMON,F.WANG,L.R.THOMAS,J.PHAN,B.ZHAO, JRNL AUTH 2 E.T.OLEJNICZAK,J.D.MACDONALD,J.G.SHAW,C.SCHLUND,W.PAYNE, JRNL AUTH 3 J.CREIGHTON,S.R.STAUFFER,A.G.WATERSON,W.P.TANSEY,S.W.FESIK JRNL TITL DISCOVERY OF WD REPEAT-CONTAINING PROTEIN 5 (WDR5)-MYC JRNL TITL 2 INHIBITORS USING FRAGMENT-BASED METHODS AND STRUCTURE-BASED JRNL TITL 3 DESIGN. JRNL REF J.MED.CHEM. V. 63 4315 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32223236 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00224 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 80495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9700 - 3.8536 0.98 5857 149 0.1531 0.1657 REMARK 3 2 3.8536 - 3.0598 0.99 5760 148 0.1521 0.1868 REMARK 3 3 3.0598 - 2.6733 0.99 5707 144 0.1690 0.1781 REMARK 3 4 2.6733 - 2.4291 0.98 5676 146 0.1712 0.1890 REMARK 3 5 2.4291 - 2.2550 0.98 5634 142 0.1653 0.1783 REMARK 3 6 2.2550 - 2.1221 0.98 5624 144 0.1618 0.1715 REMARK 3 7 2.1221 - 2.0159 0.98 5619 143 0.1584 0.1752 REMARK 3 8 2.0159 - 1.9281 0.97 5567 142 0.1519 0.1930 REMARK 3 9 1.9281 - 1.8539 0.97 5587 142 0.1557 0.1908 REMARK 3 10 1.8539 - 1.7900 0.97 5528 141 0.1557 0.1997 REMARK 3 11 1.7900 - 1.7340 0.97 5477 139 0.1568 0.1855 REMARK 3 12 1.7340 - 1.6844 0.96 5561 141 0.1585 0.1938 REMARK 3 13 1.6844 - 1.6401 0.96 5505 140 0.1634 0.1968 REMARK 3 14 1.6401 - 1.6001 0.94 5394 138 0.1660 0.2129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 127.2083 22.2072 34.6343 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0577 REMARK 3 T33: 0.1381 T12: 0.0019 REMARK 3 T13: -0.0343 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.2146 L22: 0.6280 REMARK 3 L33: 1.3772 L12: 0.0059 REMARK 3 L13: 0.1564 L23: -0.4101 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.0878 S13: 0.2515 REMARK 3 S21: -0.0242 S22: 0.0125 S23: 0.0694 REMARK 3 S31: -0.2492 S32: -0.0263 S33: 0.0068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.8291 14.6688 46.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1237 REMARK 3 T33: 0.1126 T12: 0.0181 REMARK 3 T13: 0.0054 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.3518 L22: 1.6833 REMARK 3 L33: 2.0692 L12: -0.5014 REMARK 3 L13: 0.5949 L23: -0.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.3281 S13: 0.1574 REMARK 3 S21: 0.0254 S22: 0.0550 S23: 0.2285 REMARK 3 S31: -0.1625 S32: -0.3336 S33: -0.0240 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 131.3593 3.6906 42.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0401 REMARK 3 T33: 0.1052 T12: -0.0002 REMARK 3 T13: 0.0082 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.0546 L22: 1.2557 REMARK 3 L33: 1.9994 L12: -0.2409 REMARK 3 L13: 0.4825 L23: -0.1321 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0368 S13: -0.2153 REMARK 3 S21: 0.0258 S22: -0.0151 S23: 0.0497 REMARK 3 S31: 0.1747 S32: 0.0121 S33: 0.0116 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 138.9966 -3.5513 38.3074 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.0828 REMARK 3 T33: 0.1960 T12: 0.0509 REMARK 3 T13: -0.0102 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.8628 L22: 1.6108 REMARK 3 L33: 1.9978 L12: 1.5249 REMARK 3 L13: 0.5653 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0930 S13: -0.4819 REMARK 3 S21: -0.0334 S22: -0.0053 S23: -0.0531 REMARK 3 S31: 0.4168 S32: 0.1954 S33: 0.0423 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 143.1674 3.9335 30.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1574 REMARK 3 T33: 0.1443 T12: 0.0318 REMARK 3 T13: 0.0171 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.4184 L22: 2.1985 REMARK 3 L33: 2.3307 L12: 0.4024 REMARK 3 L13: 0.4967 L23: 0.3380 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.2683 S13: -0.3752 REMARK 3 S21: -0.1978 S22: 0.0219 S23: -0.2168 REMARK 3 S31: 0.2132 S32: 0.3729 S33: -0.0501 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.1983 11.4354 26.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.2015 REMARK 3 T33: 0.1101 T12: 0.0151 REMARK 3 T13: 0.0208 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.0954 L22: 1.0606 REMARK 3 L33: 2.0297 L12: -0.0480 REMARK 3 L13: 0.9103 L23: -0.3394 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.2695 S13: -0.0110 REMARK 3 S21: -0.1043 S22: -0.1006 S23: -0.1187 REMARK 3 S31: 0.0356 S32: 0.3331 S33: 0.1373 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.4037 19.7340 21.6132 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.2875 REMARK 3 T33: 0.1811 T12: -0.0367 REMARK 3 T13: -0.0124 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 2.6839 L22: 1.1807 REMARK 3 L33: 2.0033 L12: -0.1555 REMARK 3 L13: 0.6382 L23: -0.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.1690 S12: 0.5246 S13: 0.5511 REMARK 3 S21: -0.1728 S22: -0.0886 S23: -0.2130 REMARK 3 S31: -0.2260 S32: 0.3703 S33: 0.0630 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 134.2598 23.9681 26.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1246 REMARK 3 T33: 0.2306 T12: 0.0091 REMARK 3 T13: -0.0664 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.0134 L22: 1.0556 REMARK 3 L33: 0.7259 L12: 0.1358 REMARK 3 L13: 0.3604 L23: -0.7409 REMARK 3 S TENSOR REMARK 3 S11: -0.2994 S12: 0.1006 S13: 0.7166 REMARK 3 S21: 0.0333 S22: 0.0764 S23: -0.1196 REMARK 3 S31: -0.3463 S32: 0.1854 S33: 0.2374 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.8355 -8.3619 11.7682 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0746 REMARK 3 T33: 0.0904 T12: -0.0094 REMARK 3 T13: -0.0023 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.0231 L22: 0.8807 REMARK 3 L33: 0.9464 L12: 0.2594 REMARK 3 L13: -0.1997 L23: 0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.0975 S13: -0.0954 REMARK 3 S21: 0.0202 S22: -0.0554 S23: -0.1184 REMARK 3 S31: -0.0467 S32: 0.0976 S33: 0.0259 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.8814 -21.8045 16.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.1260 REMARK 3 T33: 0.2181 T12: -0.0241 REMARK 3 T13: 0.0391 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.5322 L22: 1.9863 REMARK 3 L33: 1.6097 L12: -0.7589 REMARK 3 L13: 0.3213 L23: 0.2383 REMARK 3 S TENSOR REMARK 3 S11: -0.0636 S12: -0.2396 S13: -0.4489 REMARK 3 S21: 0.0243 S22: -0.0649 S23: 0.0700 REMARK 3 S31: 0.2006 S32: -0.1361 S33: 0.0249 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.0697 -5.4920 24.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.1743 REMARK 3 T33: 0.0672 T12: -0.0438 REMARK 3 T13: 0.0194 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.0386 L22: 0.9565 REMARK 3 L33: 1.1225 L12: 0.5740 REMARK 3 L13: -0.1566 L23: 0.0542 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: -0.3031 S13: -0.0103 REMARK 3 S21: 0.1861 S22: -0.1856 S23: 0.0564 REMARK 3 S31: -0.0363 S32: -0.0495 S33: 0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 43.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.20500 REMARK 200 FOR SHELL : 8.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS 6.5, 0.2 M AMMONIUM ACETATE, REMARK 280 28% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.13150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.13150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 87 CE NZ REMARK 470 LYS A 109 NZ REMARK 470 LYS A 120 CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ARG A 181 CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CE NZ REMARK 470 LYS A 245 NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLN A 298 CG CD OE1 NE2 REMARK 470 LYS B 87 CE NZ REMARK 470 LYS B 109 NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 ASP B 212 CG OD1 OD2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 151 6.29 81.58 REMARK 500 LEU A 234 35.16 -80.26 REMARK 500 LYS A 259 -50.60 -135.89 REMARK 500 LYS B 109 6.75 80.01 REMARK 500 ASP B 211 172.47 62.80 REMARK 500 LEU B 234 32.42 -81.83 REMARK 500 LYS B 259 -49.80 -132.63 REMARK 500 ASP B 324 -62.61 -122.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 866 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 920 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B 921 DISTANCE = 7.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q8M A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q8M B 401 DBREF 6UIK A 31 334 UNP P61964 WDR5_HUMAN 31 334 DBREF 6UIK B 31 334 UNP P61964 WDR5_HUMAN 31 334 SEQRES 1 A 304 VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY SEQRES 2 A 304 HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN SEQRES 3 A 304 GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE SEQRES 4 A 304 LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR SEQRES 5 A 304 ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SEQRES 6 A 304 SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP SEQRES 7 A 304 LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS SEQRES 8 A 304 LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS SEQRES 9 A 304 CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SEQRES 10 A 304 SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR SEQRES 11 A 304 GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO SEQRES 12 A 304 VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE SEQRES 13 A 304 VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP SEQRES 14 A 304 THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP SEQRES 15 A 304 ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN SEQRES 16 A 304 GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU SEQRES 17 A 304 LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR SEQRES 18 A 304 TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA SEQRES 19 A 304 ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SEQRES 20 A 304 SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR SEQRES 21 A 304 LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL SEQRES 22 A 304 VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE SEQRES 23 A 304 ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU SEQRES 24 A 304 TRP LYS SER ASP CYS SEQRES 1 B 304 VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY SEQRES 2 B 304 HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN SEQRES 3 B 304 GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE SEQRES 4 B 304 LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR SEQRES 5 B 304 ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SEQRES 6 B 304 SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP SEQRES 7 B 304 LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS SEQRES 8 B 304 LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS SEQRES 9 B 304 CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SEQRES 10 B 304 SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR SEQRES 11 B 304 GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO SEQRES 12 B 304 VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE SEQRES 13 B 304 VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP SEQRES 14 B 304 THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP SEQRES 15 B 304 ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN SEQRES 16 B 304 GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU SEQRES 17 B 304 LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR SEQRES 18 B 304 TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA SEQRES 19 B 304 ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SEQRES 20 B 304 SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR SEQRES 21 B 304 LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL SEQRES 22 B 304 VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE SEQRES 23 B 304 ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU SEQRES 24 B 304 TRP LYS SER ASP CYS HET Q8M A 401 23 HET Q8M B 401 23 HETNAM Q8M 5-BROMO-3-CHLORO-N-(1-CYCLOPENTYL-1H-IMIDAZOL-4-YL)-2- HETNAM 2 Q8M HYDROXYBENZENE-1-SULFONAMIDE FORMUL 3 Q8M 2(C14 H15 BR CL N3 O3 S) FORMUL 5 HOH *788(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N SER A 318 O LYS A 328 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N SER B 318 O LYS B 328 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O SER B 63 N SER B 49 SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O LYS B 70 N SER B 62 SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 THR B 110 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 CYS B 121 LYS B 126 -1 O LEU B 125 N LEU B 111 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 206 N ILE B 197 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LYS B 247 N ASP B 242 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 SITE 1 AC1 12 SER A 223 PRO A 224 ASN A 225 TYR A 228 SITE 2 AC1 12 PHE A 266 SER A 267 VAL A 268 LYS A 272 SITE 3 AC1 12 TRP A 273 LEU A 288 GLN A 289 HOH A 548 SITE 1 AC2 13 SER B 223 PRO B 224 ASN B 225 TYR B 228 SITE 2 AC2 13 LEU B 240 PHE B 266 SER B 267 LYS B 272 SITE 3 AC2 13 TRP B 273 LEU B 288 GLN B 289 HOH B 575 SITE 4 AC2 13 HOH B 839 CRYST1 134.263 46.880 112.842 90.00 117.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007448 0.000000 0.003858 0.00000 SCALE2 0.000000 0.021331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009980 0.00000