HEADER PEPTIDE BINDING PROTEIN 01-OCT-19 6UJ0 TITLE UNBOUND BACE2 MUTANT STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTIC-LIKE PROTEASE 56 KDA,ASPARTYL PROTEASE 1,ASP 1, COMPND 5 BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2,BETA-SITE APP COMPND 6 CLEAVING ENZYME 2,DOWN REGION ASPARTIC PROTEASE,DRAP,MEMAPSIN-1, COMPND 7 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1,THETA-SECRETASE; COMPND 8 EC: 3.4.23.45; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: UNIDENTIFIED POLYPEPTIDE; COMPND 13 CHAIN: C, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE2, AEPLC, ALP56, ASP21, CDA13, UNQ418/PRO852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ASPARTIC PROTEASE, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.YEN,A.K.GHOSH,A.D.MESECAR REVDAT 3 11-OCT-23 6UJ0 1 REMARK REVDAT 2 21-APR-21 6UJ0 1 JRNL REVDAT 1 07-OCT-20 6UJ0 0 JRNL AUTH Y.C.YEN,A.M.KAMMEYER,J.TIRLANGI,A.K.GHOSH,A.D.MESECAR JRNL TITL A STRUCTURE-BASED DISCOVERY PLATFORM FOR BACE2 AND THE JRNL TITL 2 DEVELOPMENT OF SELECTIVE BACE INHIBITORS. JRNL REF ACS CHEM NEUROSCI V. 12 581 2021 JRNL REFN ESSN 1948-7193 JRNL PMID 33544569 JRNL DOI 10.1021/ACSCHEMNEURO.0C00629 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 43480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0400 - 5.3900 0.96 2538 157 0.2051 0.2380 REMARK 3 2 5.3900 - 4.2800 0.99 2618 142 0.1731 0.1833 REMARK 3 3 4.2800 - 3.7400 0.98 2589 166 0.1859 0.2091 REMARK 3 4 3.7400 - 3.4000 0.98 2629 113 0.2014 0.2478 REMARK 3 5 3.4000 - 3.1600 0.98 2612 140 0.2216 0.2688 REMARK 3 6 3.1600 - 2.9700 0.98 2643 113 0.2316 0.2854 REMARK 3 7 2.9700 - 2.8200 0.98 2589 129 0.2332 0.2680 REMARK 3 8 2.8200 - 2.7000 0.98 2612 155 0.2378 0.2857 REMARK 3 9 2.7000 - 2.5900 0.98 2620 112 0.2456 0.3404 REMARK 3 10 2.5900 - 2.5000 0.98 2627 145 0.2567 0.3133 REMARK 3 11 2.5000 - 2.4300 0.98 2582 140 0.2709 0.3459 REMARK 3 12 2.4300 - 2.3600 0.97 2581 141 0.2699 0.3251 REMARK 3 13 2.3600 - 2.3000 0.98 2588 140 0.2803 0.3101 REMARK 3 14 2.3000 - 2.2400 0.96 2544 145 0.2986 0.3780 REMARK 3 15 2.2400 - 2.1900 0.97 2589 145 0.2991 0.3720 REMARK 3 16 2.1900 - 2.1400 0.87 2321 115 0.3089 0.3801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.263 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5884 REMARK 3 ANGLE : 0.846 8001 REMARK 3 CHIRALITY : 0.064 896 REMARK 3 PLANARITY : 0.005 1019 REMARK 3 DIHEDRAL : 15.687 2085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH = 6 1.26 M (NH4)2SO4, PH REMARK 280 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -61 REMARK 465 GLY A -60 REMARK 465 ALA A -59 REMARK 465 LEU A -58 REMARK 465 ALA A -57 REMARK 465 ARG A -56 REMARK 465 ALA A -55 REMARK 465 LEU A -54 REMARK 465 LEU A -53 REMARK 465 LEU A -52 REMARK 465 PRO A -51 REMARK 465 LEU A -50 REMARK 465 LEU A -49 REMARK 465 ALA A -48 REMARK 465 GLN A -47 REMARK 465 TRP A -46 REMARK 465 LEU A -45 REMARK 465 LEU A -44 REMARK 465 ARG A -43 REMARK 465 ALA A -42 REMARK 465 ALA A -41 REMARK 465 PRO A -40 REMARK 465 GLU A -39 REMARK 465 LEU A -38 REMARK 465 ALA A -37 REMARK 465 PRO A -36 REMARK 465 ALA A -35 REMARK 465 PRO A -34 REMARK 465 PHE A -33 REMARK 465 THR A -32 REMARK 465 LEU A -31 REMARK 465 PRO A -30 REMARK 465 LEU A -29 REMARK 465 ARG A -28 REMARK 465 VAL A -27 REMARK 465 ALA A -26 REMARK 465 ALA A -25 REMARK 465 ALA A -24 REMARK 465 THR A -23 REMARK 465 ASN A -22 REMARK 465 ARG A -21 REMARK 465 VAL A -20 REMARK 465 VAL A -19 REMARK 465 ALA A -18 REMARK 465 PRO A -17 REMARK 465 THR A -16 REMARK 465 PRO A -15 REMARK 465 GLY A -14 REMARK 465 PRO A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 PRO A -10 REMARK 465 ALA A -9 REMARK 465 GLU A -8 REMARK 465 ARG A -7 REMARK 465 HIS A -6 REMARK 465 ALA A -5 REMARK 465 ASP A -4 REMARK 465 GLY A -3 REMARK 465 LEU A -2 REMARK 465 ALA A -1 REMARK 465 LEU A 0 REMARK 465 ALA A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 LEU A 16 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 THR A 284 REMARK 465 ASN A 285 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 LEU A 327 REMARK 465 ASN A 328 REMARK 465 ALA A 398 REMARK 465 MET B -61 REMARK 465 GLY B -60 REMARK 465 ALA B -59 REMARK 465 LEU B -58 REMARK 465 ALA B -57 REMARK 465 ARG B -56 REMARK 465 ALA B -55 REMARK 465 LEU B -54 REMARK 465 LEU B -53 REMARK 465 LEU B -52 REMARK 465 PRO B -51 REMARK 465 LEU B -50 REMARK 465 LEU B -49 REMARK 465 ALA B -48 REMARK 465 GLN B -47 REMARK 465 TRP B -46 REMARK 465 LEU B -45 REMARK 465 LEU B -44 REMARK 465 ARG B -43 REMARK 465 ALA B -42 REMARK 465 ALA B -41 REMARK 465 PRO B -40 REMARK 465 GLU B -39 REMARK 465 LEU B -38 REMARK 465 ALA B -37 REMARK 465 PRO B -36 REMARK 465 ALA B -35 REMARK 465 PRO B -34 REMARK 465 PHE B -33 REMARK 465 THR B -32 REMARK 465 LEU B -31 REMARK 465 PRO B -30 REMARK 465 LEU B -29 REMARK 465 ARG B -28 REMARK 465 VAL B -27 REMARK 465 ALA B -26 REMARK 465 ALA B -25 REMARK 465 ALA B -24 REMARK 465 THR B -23 REMARK 465 ASN B -22 REMARK 465 ARG B -21 REMARK 465 VAL B -20 REMARK 465 VAL B -19 REMARK 465 ALA B -18 REMARK 465 PRO B -17 REMARK 465 THR B -16 REMARK 465 PRO B -15 REMARK 465 GLY B -14 REMARK 465 PRO B -13 REMARK 465 GLY B -12 REMARK 465 THR B -11 REMARK 465 PRO B -10 REMARK 465 ALA B -9 REMARK 465 GLU B -8 REMARK 465 ARG B -7 REMARK 465 HIS B -6 REMARK 465 ALA B -5 REMARK 465 ASP B -4 REMARK 465 GLY B -3 REMARK 465 LEU B -2 REMARK 465 ALA B -1 REMARK 465 LEU B 0 REMARK 465 ALA B 1 REMARK 465 LEU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ASN B 14 REMARK 465 PHE B 15 REMARK 465 ASP B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ASN B 183 REMARK 465 MET B 323 REMARK 465 GLY B 324 REMARK 465 ALA B 325 REMARK 465 GLY B 326 REMARK 465 LEU B 327 REMARK 465 GLU B 389 REMARK 465 ASP B 390 REMARK 465 UNK D 6 REMARK 465 UNK D 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 23.44 -140.85 REMARK 500 LYS A 105 118.57 -166.40 REMARK 500 ASN A 123 27.40 49.31 REMARK 500 TRP A 210 -81.67 -141.60 REMARK 500 ASP A 236 -72.83 77.49 REMARK 500 LYS B 105 76.67 -150.82 REMARK 500 TRP B 210 -83.63 -137.12 REMARK 500 ASN B 227 -4.45 81.44 REMARK 500 ASP B 236 -62.35 77.24 REMARK 500 UNK D 2 110.06 63.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 499 DISTANCE = 6.06 ANGSTROMS DBREF 6UJ0 A -61 398 UNP Q9Y5Z0 BACE2_HUMAN 1 460 DBREF 6UJ0 B -61 398 UNP Q9Y5Z0 BACE2_HUMAN 1 460 DBREF 6UJ0 C 1 7 PDB 6UJ0 6UJ0 1 7 DBREF 6UJ0 D 1 7 PDB 6UJ0 6UJ0 1 7 SEQADV 6UJ0 ALA A 269 UNP Q9Y5Z0 GLU 331 ENGINEERED MUTATION SEQADV 6UJ0 ALA B 269 UNP Q9Y5Z0 GLU 331 ENGINEERED MUTATION SEQRES 1 A 460 MET GLY ALA LEU ALA ARG ALA LEU LEU LEU PRO LEU LEU SEQRES 2 A 460 ALA GLN TRP LEU LEU ARG ALA ALA PRO GLU LEU ALA PRO SEQRES 3 A 460 ALA PRO PHE THR LEU PRO LEU ARG VAL ALA ALA ALA THR SEQRES 4 A 460 ASN ARG VAL VAL ALA PRO THR PRO GLY PRO GLY THR PRO SEQRES 5 A 460 ALA GLU ARG HIS ALA ASP GLY LEU ALA LEU ALA LEU GLU SEQRES 6 A 460 PRO ALA LEU ALA SER PRO ALA GLY ALA ALA ASN PHE LEU SEQRES 7 A 460 ALA MET VAL ASP ASN LEU GLN GLY ASP SER GLY ARG GLY SEQRES 8 A 460 TYR TYR LEU GLU MET LEU ILE GLY THR PRO PRO GLN LYS SEQRES 9 A 460 LEU GLN ILE LEU VAL ASP THR GLY SER SER ASN PHE ALA SEQRES 10 A 460 VAL ALA GLY THR PRO HIS SER TYR ILE ASP THR TYR PHE SEQRES 11 A 460 ASP THR GLU ARG SER SER THR TYR ARG SER LYS GLY PHE SEQRES 12 A 460 ASP VAL THR VAL LYS TYR THR GLN GLY SER TRP THR GLY SEQRES 13 A 460 PHE VAL GLY GLU ASP LEU VAL THR ILE PRO LYS GLY PHE SEQRES 14 A 460 ASN THR SER PHE LEU VAL ASN ILE ALA THR ILE PHE GLU SEQRES 15 A 460 SER GLU ASN PHE PHE LEU PRO GLY ILE LYS TRP ASN GLY SEQRES 16 A 460 ILE LEU GLY LEU ALA TYR ALA THR LEU ALA LYS PRO SER SEQRES 17 A 460 SER SER LEU GLU THR PHE PHE ASP SER LEU VAL THR GLN SEQRES 18 A 460 ALA ASN ILE PRO ASN VAL PHE SER MET GLN MET CYS GLY SEQRES 19 A 460 ALA GLY LEU PRO VAL ALA GLY SER GLY THR ASN GLY GLY SEQRES 20 A 460 SER LEU VAL LEU GLY GLY ILE GLU PRO SER LEU TYR LYS SEQRES 21 A 460 GLY ASP ILE TRP TYR THR PRO ILE LYS GLU GLU TRP TYR SEQRES 22 A 460 TYR GLN ILE GLU ILE LEU LYS LEU GLU ILE GLY GLY GLN SEQRES 23 A 460 SER LEU ASN LEU ASP CYS ARG GLU TYR ASN ALA ASP LYS SEQRES 24 A 460 ALA ILE VAL ASP SER GLY THR THR LEU LEU ARG LEU PRO SEQRES 25 A 460 GLN LYS VAL PHE ASP ALA VAL VAL GLU ALA VAL ALA ARG SEQRES 26 A 460 ALA SER LEU ILE PRO ALA PHE SER ASP GLY PHE TRP THR SEQRES 27 A 460 GLY SER GLN LEU ALA CYS TRP THR ASN SER GLU THR PRO SEQRES 28 A 460 TRP SER TYR PHE PRO LYS ILE SER ILE TYR LEU ARG ASP SEQRES 29 A 460 GLU ASN SER SER ARG SER PHE ARG ILE THR ILE LEU PRO SEQRES 30 A 460 GLN LEU TYR ILE GLN PRO MET MET GLY ALA GLY LEU ASN SEQRES 31 A 460 TYR GLU CYS TYR ARG PHE GLY ILE SER PRO SER THR ASN SEQRES 32 A 460 ALA LEU VAL ILE GLY ALA THR VAL MET GLU GLY PHE TYR SEQRES 33 A 460 VAL ILE PHE ASP ARG ALA GLN LYS ARG VAL GLY PHE ALA SEQRES 34 A 460 ALA SER PRO CYS ALA GLU ILE ALA GLY ALA ALA VAL SER SEQRES 35 A 460 GLU ILE SER GLY PRO PHE SER THR GLU ASP VAL ALA SER SEQRES 36 A 460 ASN CYS VAL PRO ALA SEQRES 1 B 460 MET GLY ALA LEU ALA ARG ALA LEU LEU LEU PRO LEU LEU SEQRES 2 B 460 ALA GLN TRP LEU LEU ARG ALA ALA PRO GLU LEU ALA PRO SEQRES 3 B 460 ALA PRO PHE THR LEU PRO LEU ARG VAL ALA ALA ALA THR SEQRES 4 B 460 ASN ARG VAL VAL ALA PRO THR PRO GLY PRO GLY THR PRO SEQRES 5 B 460 ALA GLU ARG HIS ALA ASP GLY LEU ALA LEU ALA LEU GLU SEQRES 6 B 460 PRO ALA LEU ALA SER PRO ALA GLY ALA ALA ASN PHE LEU SEQRES 7 B 460 ALA MET VAL ASP ASN LEU GLN GLY ASP SER GLY ARG GLY SEQRES 8 B 460 TYR TYR LEU GLU MET LEU ILE GLY THR PRO PRO GLN LYS SEQRES 9 B 460 LEU GLN ILE LEU VAL ASP THR GLY SER SER ASN PHE ALA SEQRES 10 B 460 VAL ALA GLY THR PRO HIS SER TYR ILE ASP THR TYR PHE SEQRES 11 B 460 ASP THR GLU ARG SER SER THR TYR ARG SER LYS GLY PHE SEQRES 12 B 460 ASP VAL THR VAL LYS TYR THR GLN GLY SER TRP THR GLY SEQRES 13 B 460 PHE VAL GLY GLU ASP LEU VAL THR ILE PRO LYS GLY PHE SEQRES 14 B 460 ASN THR SER PHE LEU VAL ASN ILE ALA THR ILE PHE GLU SEQRES 15 B 460 SER GLU ASN PHE PHE LEU PRO GLY ILE LYS TRP ASN GLY SEQRES 16 B 460 ILE LEU GLY LEU ALA TYR ALA THR LEU ALA LYS PRO SER SEQRES 17 B 460 SER SER LEU GLU THR PHE PHE ASP SER LEU VAL THR GLN SEQRES 18 B 460 ALA ASN ILE PRO ASN VAL PHE SER MET GLN MET CYS GLY SEQRES 19 B 460 ALA GLY LEU PRO VAL ALA GLY SER GLY THR ASN GLY GLY SEQRES 20 B 460 SER LEU VAL LEU GLY GLY ILE GLU PRO SER LEU TYR LYS SEQRES 21 B 460 GLY ASP ILE TRP TYR THR PRO ILE LYS GLU GLU TRP TYR SEQRES 22 B 460 TYR GLN ILE GLU ILE LEU LYS LEU GLU ILE GLY GLY GLN SEQRES 23 B 460 SER LEU ASN LEU ASP CYS ARG GLU TYR ASN ALA ASP LYS SEQRES 24 B 460 ALA ILE VAL ASP SER GLY THR THR LEU LEU ARG LEU PRO SEQRES 25 B 460 GLN LYS VAL PHE ASP ALA VAL VAL GLU ALA VAL ALA ARG SEQRES 26 B 460 ALA SER LEU ILE PRO ALA PHE SER ASP GLY PHE TRP THR SEQRES 27 B 460 GLY SER GLN LEU ALA CYS TRP THR ASN SER GLU THR PRO SEQRES 28 B 460 TRP SER TYR PHE PRO LYS ILE SER ILE TYR LEU ARG ASP SEQRES 29 B 460 GLU ASN SER SER ARG SER PHE ARG ILE THR ILE LEU PRO SEQRES 30 B 460 GLN LEU TYR ILE GLN PRO MET MET GLY ALA GLY LEU ASN SEQRES 31 B 460 TYR GLU CYS TYR ARG PHE GLY ILE SER PRO SER THR ASN SEQRES 32 B 460 ALA LEU VAL ILE GLY ALA THR VAL MET GLU GLY PHE TYR SEQRES 33 B 460 VAL ILE PHE ASP ARG ALA GLN LYS ARG VAL GLY PHE ALA SEQRES 34 B 460 ALA SER PRO CYS ALA GLU ILE ALA GLY ALA ALA VAL SER SEQRES 35 B 460 GLU ILE SER GLY PRO PHE SER THR GLU ASP VAL ALA SER SEQRES 36 B 460 ASN CYS VAL PRO ALA SEQRES 1 C 7 UNK UNK UNK UNK UNK UNK UNK SEQRES 1 D 7 UNK UNK UNK UNK UNK UNK UNK FORMUL 5 HOH *172(H2 O) HELIX 1 AA1 ASP A 69 SER A 73 5 5 HELIX 2 AA2 TYR A 139 ALA A 143 5 5 HELIX 3 AA3 THR A 151 ASN A 161 1 11 HELIX 4 AA4 GLU A 193 TYR A 197 5 5 HELIX 5 AA5 GLN A 251 SER A 265 1 15 HELIX 6 AA6 SER A 271 THR A 276 1 6 HELIX 7 AA7 THR A 288 PHE A 293 5 6 HELIX 8 AA8 LEU A 314 TYR A 318 1 5 HELIX 9 AA9 GLY A 346 GLU A 351 1 6 HELIX 10 AB1 PRO A 370 GLU A 373 5 4 HELIX 11 AB2 ASP B 69 SER B 73 5 5 HELIX 12 AB3 TYR B 139 ALA B 143 5 5 HELIX 13 AB4 THR B 151 ASN B 161 1 11 HELIX 14 AB5 GLU B 193 TYR B 197 5 5 HELIX 15 AB6 ASP B 229 ALA B 235 5 7 HELIX 16 AB7 GLN B 251 SER B 265 1 15 HELIX 17 AB8 SER B 271 GLY B 277 1 7 HELIX 18 AB9 THR B 288 PHE B 293 5 6 HELIX 19 AC1 LEU B 314 TYR B 318 1 5 HELIX 20 AC2 GLY B 346 GLU B 351 1 6 HELIX 21 AC3 PRO B 370 GLU B 373 5 4 SHEET 1 AA1 7 MET A 18 LEU A 22 0 SHEET 2 AA1 7 GLY A 185 LEU A 189 -1 O LEU A 189 N MET A 18 SHEET 3 AA1 7 VAL A 165 MET A 170 -1 N GLN A 169 O SER A 186 SHEET 4 AA1 7 PHE A 353 ASP A 358 -1 O PHE A 357 N PHE A 166 SHEET 5 AA1 7 ARG A 363 ALA A 368 -1 O GLY A 365 N ILE A 356 SHEET 6 AA1 7 LYS A 198 GLU A 208 -1 N THR A 204 O VAL A 364 SHEET 7 AA1 7 GLN A 213 ILE A 214 -1 O GLN A 213 N LYS A 207 SHEET 1 AA2 8 ARG A 77 LYS A 86 0 SHEET 2 AA2 8 SER A 91 LYS A 105 -1 O VAL A 96 N PHE A 81 SHEET 3 AA2 8 ASN A 108 GLU A 122 -1 O GLU A 120 N THR A 93 SHEET 4 AA2 8 PHE A 54 ALA A 57 1 N VAL A 56 O ILE A 118 SHEET 5 AA2 8 GLY A 133 GLY A 136 -1 O ILE A 134 N ALA A 55 SHEET 6 AA2 8 GLN A 41 ASP A 48 1 N LEU A 46 O LEU A 135 SHEET 7 AA2 8 TYR A 31 ILE A 36 -1 N MET A 34 O LEU A 43 SHEET 8 AA2 8 SER A 91 LYS A 105 -1 O THR A 102 N LEU A 35 SHEET 1 AA3 5 GLN A 224 SER A 225 0 SHEET 2 AA3 5 ILE A 216 ILE A 221 -1 N ILE A 221 O GLN A 224 SHEET 3 AA3 5 ILE A 296 ARG A 301 -1 O TYR A 299 N LYS A 218 SHEET 4 AA3 5 ARG A 307 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AA3 5 SER A 380 SER A 387 -1 O GLU A 381 N THR A 312 SHEET 1 AA4 2 LYS A 237 VAL A 240 0 SHEET 2 AA4 2 ALA A 342 ILE A 345 1 O ILE A 345 N ILE A 239 SHEET 1 AA5 2 LEU A 247 PRO A 250 0 SHEET 2 AA5 2 ILE A 336 SER A 339 1 O SER A 339 N LEU A 249 SHEET 1 AA6 4 ILE A 319 PRO A 321 0 SHEET 2 AA6 4 GLU A 330 PHE A 334 -1 O ARG A 333 N GLN A 320 SHEET 3 AA6 4 GLN A 279 TRP A 283 -1 N ALA A 281 O TYR A 332 SHEET 4 AA6 4 UNK C 2 UNK C 4 -1 O UNK C 3 N LEU A 280 SHEET 1 AA7 7 MET B 18 LEU B 22 0 SHEET 2 AA7 7 GLY B 185 LEU B 189 -1 O LEU B 187 N ASP B 20 SHEET 3 AA7 7 VAL B 165 MET B 170 -1 N SER B 167 O VAL B 188 SHEET 4 AA7 7 PHE B 353 ASP B 358 -1 O PHE B 357 N PHE B 166 SHEET 5 AA7 7 ARG B 363 ALA B 368 -1 O ALA B 367 N TYR B 354 SHEET 6 AA7 7 LYS B 198 GLU B 208 -1 N TRP B 202 O PHE B 366 SHEET 7 AA7 7 GLN B 213 ILE B 214 -1 O GLN B 213 N LYS B 207 SHEET 1 AA8 8 ARG B 77 LYS B 86 0 SHEET 2 AA8 8 SER B 91 THR B 102 -1 O VAL B 96 N PHE B 81 SHEET 3 AA8 8 SER B 110 GLU B 122 -1 O GLU B 120 N THR B 93 SHEET 4 AA8 8 PHE B 54 ALA B 57 1 N VAL B 56 O ILE B 118 SHEET 5 AA8 8 GLY B 133 GLY B 136 -1 O ILE B 134 N ALA B 55 SHEET 6 AA8 8 GLN B 41 ASP B 48 1 N LEU B 46 O LEU B 135 SHEET 7 AA8 8 TYR B 31 ILE B 36 -1 N ILE B 36 O GLN B 41 SHEET 8 AA8 8 SER B 91 THR B 102 -1 O THR B 102 N LEU B 35 SHEET 1 AA9 5 GLN B 224 SER B 225 0 SHEET 2 AA9 5 ILE B 216 ILE B 221 -1 N ILE B 221 O GLN B 224 SHEET 3 AA9 5 ILE B 296 ARG B 301 -1 O TYR B 299 N LEU B 217 SHEET 4 AA9 5 ARG B 307 ILE B 313 -1 O ILE B 311 N ILE B 298 SHEET 5 AA9 5 SER B 380 SER B 387 -1 O GLU B 381 N THR B 312 SHEET 1 AB1 2 ALA B 238 VAL B 240 0 SHEET 2 AB1 2 LEU B 343 ILE B 345 1 O ILE B 345 N ILE B 239 SHEET 1 AB2 2 LEU B 247 PRO B 250 0 SHEET 2 AB2 2 ILE B 336 SER B 339 1 O SER B 337 N LEU B 247 SHEET 1 AB3 4 ILE B 319 PRO B 321 0 SHEET 2 AB3 4 TYR B 329 PHE B 334 -1 O ARG B 333 N GLN B 320 SHEET 3 AB3 4 LEU B 280 THR B 284 -1 N ALA B 281 O TYR B 332 SHEET 4 AB3 4 UNK D 3 UNK D 4 1 O UNK D 4 N CYS B 282 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.27 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.03 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.01 SSBOND 4 CYS B 171 CYS B 371 1555 1555 2.03 SSBOND 5 CYS B 230 CYS B 395 1555 1555 2.00 SSBOND 6 CYS B 282 CYS B 331 1555 1555 2.02 CISPEP 1 THR A 38 PRO A 39 0 -6.29 CISPEP 2 LYS A 144 PRO A 145 0 4.94 CISPEP 3 GLY A 384 PRO A 385 0 0.34 CISPEP 4 THR B 38 PRO B 39 0 -2.62 CISPEP 5 LYS B 144 PRO B 145 0 4.78 CISPEP 6 GLY B 384 PRO B 385 0 1.34 CRYST1 46.603 58.982 84.555 113.39 93.67 96.38 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021458 0.002400 0.002579 0.00000 SCALE2 0.000000 0.017060 0.007613 0.00000 SCALE3 0.000000 0.000000 0.012978 0.00000